Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3AQN
DownloadVisualize
BU of 3aqn by Molmil
Complex structure of bacterial protein (apo form II)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly(A) polymerase
Authors:Toh, Y, Takeshita, D, Tomita , K.
Deposit date:2010-11-09
Release date:2011-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Mechanism for the alteration of the substrate specificities of template-independent RNA polymerases
Structure, 19, 2011
3AQL
DownloadVisualize
BU of 3aql by Molmil
Structure of bacterial protein (apo form II)
Descriptor: GLYCEROL, MAGNESIUM ION, Poly(A) polymerase
Authors:Toh, Y, Takeshita, D, Tomita , K.
Deposit date:2010-11-09
Release date:2011-02-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mechanism for the alteration of the substrate specificities of template-independent RNA polymerases
Structure, 19, 2011
3AVT
DownloadVisualize
BU of 3avt by Molmil
Structure of viral RNA polymerase complex 1
Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Elongation factor Ts, ...
Authors:Takeshita, D, Tomita, K.
Deposit date:2011-03-08
Release date:2012-01-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.607 Å)
Cite:Molecular basis for RNA polymerization by Q beta replicase
Nat.Struct.Mol.Biol., 19, 2012
3AVW
DownloadVisualize
BU of 3avw by Molmil
Structure of viral RNA polymerase complex 4
Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Elongation factor Ts, ...
Authors:Takeshita, D, Tomita, K.
Deposit date:2011-03-08
Release date:2012-01-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Molecular basis for RNA polymerization by Q beta replicase
Nat.Struct.Mol.Biol., 19, 2012
3AVU
DownloadVisualize
BU of 3avu by Molmil
Structure of viral RNA polymerase complex 2
Descriptor: CALCIUM ION, Elongation factor Ts, Elongation factor Tu, ...
Authors:Takeshita, D, Tomita, K.
Deposit date:2011-03-08
Release date:2012-01-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.907 Å)
Cite:Molecular basis for RNA polymerization by Q beta replicase
Nat.Struct.Mol.Biol., 19, 2012
3AVX
DownloadVisualize
BU of 3avx by Molmil
Structure of viral RNA polymerase complex 5
Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Elongation factor Ts, ...
Authors:Takeshita, D, Tomita, K.
Deposit date:2011-03-08
Release date:2012-01-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.406 Å)
Cite:Molecular basis for RNA polymerization by Q beta replicase
Nat.Struct.Mol.Biol., 19, 2012
6KR2
DownloadVisualize
BU of 6kr2 by Molmil
Crystal structure of Dengue virus nonstructural protein NS5 (form 1)
Descriptor: Genome polyprotein, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Wu, J, Lu, G, Ye, H.Q, Gong, P.
Deposit date:2019-08-20
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:A conformation-based intra-molecular initiation factor identified in the flavivirus RNA-dependent RNA polymerase.
Plos Pathog., 16, 2020
6KR3
DownloadVisualize
BU of 6kr3 by Molmil
Crystal structure of Dengue virus nonstructural protein NS5 (form 2)
Descriptor: GLYCEROL, Genome polyprotein, IODIDE ION, ...
Authors:Wu, J, Lu, G, Ye, H.Q, Gong, P.
Deposit date:2019-08-20
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.931 Å)
Cite:A conformation-based intra-molecular initiation factor identified in the flavivirus RNA-dependent RNA polymerase.
Plos Pathog., 16, 2020
9BDC
DownloadVisualize
BU of 9bdc by Molmil
Cryo-EM Structure of the TEFM bound Human Mitochondrial Transcription Elongation Complex in a Closed Fingers Domain Conformation
Descriptor: DNA-directed RNA polymerase, mitochondrial, Non-Template Strand DNA (NT27mt_+1T), ...
Authors:Herbine, K.H, Nayak, A.R, Temiakov, D.
Deposit date:2024-04-11
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Structural basis for substrate binding and selection by human mitochondrial RNA polymerase.
Nat Commun, 15, 2024
9BDD
DownloadVisualize
BU of 9bdd by Molmil
Cryo-EM Structure of Non-Cognate Substrate Bound in the Entry Site (ES) of Human Mitochondrial Transcription Elongation Complex
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-directed RNA polymerase, mitochondrial, ...
Authors:Herbine, K.H, Nayak, A.R, Temiakov, D.
Deposit date:2024-04-11
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structural basis for substrate binding and selection by human mitochondrial RNA polymerase.
Nat Commun, 15, 2024
9CGI
DownloadVisualize
BU of 9cgi by Molmil
Cryo-EM structure of the Nipah Virus polymerase (L) protein in complex with the tetrameric phosphoprotein (P)
Descriptor: Phosphoprotein, RNA-directed RNA polymerase L
Authors:Liu, B, Yang, G, Wang, D.
Deposit date:2024-06-29
Release date:2024-09-18
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Structure of the Nipah virus polymerase phosphoprotein complex.
Nat Commun, 15, 2024
1KKS
DownloadVisualize
BU of 1kks by Molmil
Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression
Descriptor: 5'-R(*GP*GP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*C)-3'
Authors:Zanier, K, Luyten, I, Crombie, C, Muller, B, Schuemperli, D, Linge, J.P, Nilges, M, Sattler, M.
Deposit date:2001-12-10
Release date:2002-03-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression.
RNA, 8, 2002
7OEA
DownloadVisualize
BU of 7oea by Molmil
Lassa virus L protein bound to 3' promoter RNA (well-resolved polymerase core) [3END-CORE]
Descriptor: 3' vRNA, MAGNESIUM ION, RNA-directed RNA polymerase L, ...
Authors:Kouba, T, Vogel, D, Thorkelsson, S, Quemin, E, Williams, H.M, Milewski, M, Busch, C, Gunther, S, Grunewald, K, Rosenthal, M, Cusack, S.
Deposit date:2021-05-02
Release date:2021-12-01
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity.
Nat Commun, 12, 2021
7OCH
DownloadVisualize
BU of 7och by Molmil
Apo-structure of Lassa virus L protein (well-resolved polymerase core) [APO-CORE]
Descriptor: MAGNESIUM ION, RNA-directed RNA polymerase L, ZINC ION
Authors:Kouba, T, Vogel, D, Thorkelsson, S, Quemin, E, Williams, H.M, Milewski, M, Busch, C, Gunther, S, Grunewald, K, Rosenthal, M, Cusack, S.
Deposit date:2021-04-26
Release date:2021-12-01
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity.
Nat Commun, 12, 2021
7OEB
DownloadVisualize
BU of 7oeb by Molmil
Lassa virus L protein bound to 3' promoter RNA (well-resolved endonuclease) [3END-ENDO]
Descriptor: 3' vRNA, MAGNESIUM ION, RNA-directed RNA polymerase L, ...
Authors:Kouba, T, Vogel, D, Thorkelsson, S, Quemin, E, Williams, H.M, Milewski, M, Busch, C, Gunther, S, Grunewald, K, Rosenthal, M, Cusack, S.
Deposit date:2021-05-02
Release date:2021-12-01
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity.
Nat Commun, 12, 2021
8W8E
DownloadVisualize
BU of 8w8e by Molmil
human co-transcriptional RNA capping enzyme RNGTT
Descriptor: DNA (36-MER), DNA (45-MER), DNA-directed RNA polymerase II subunit E, ...
Authors:Li, Y, Wang, Q, Xu, Y, Li, Z.
Deposit date:2023-09-02
Release date:2024-04-10
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structures of co-transcriptional RNA capping enzymes on paused transcription complex.
Nat Commun, 15, 2024
4XLS
DownloadVisualize
BU of 4xls by Molmil
Crystal structure of T. aquaticus transcription initiation complex with CarD containing upstream fork promoter.
Descriptor: CarD-like transcriptional regulator, DNA (30-MER), DNA (5'-D(P*GP*CP*AP*CP*AP*AP*TP*TP*TP*AP*AP*CP*AP*CP*TP*TP*TP*TP*GP*TP*CP*AP*AP*G)-3'), ...
Authors:Bae, B, Darst, S.A.
Deposit date:2015-01-13
Release date:2015-09-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (4.01 Å)
Cite:CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex.
Elife, 4, 2015
8W8F
DownloadVisualize
BU of 8w8f by Molmil
human co-transcriptional RNA capping enzyme RNGTT-CMTR1
Descriptor: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, DNA (36-MER), DNA (45-MER), ...
Authors:Li, Y, Wang, Q, Xu, Y, Li, Z.
Deposit date:2023-09-02
Release date:2024-04-10
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structures of co-transcriptional RNA capping enzymes on paused transcription complex.
Nat Commun, 15, 2024
7QTL
DownloadVisualize
BU of 7qtl by Molmil
Influenza A/H7N9 polymerase elongation complex
Descriptor: 3' vRNA, 5' vRNA, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ...
Authors:Cusack, S, Kouba, T.
Deposit date:2022-01-14
Release date:2022-12-28
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106.
Cell Rep, 42, 2023
7R0E
DownloadVisualize
BU of 7r0e by Molmil
Early transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 position
Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ...
Authors:Cusack, S, Kouba, T.
Deposit date:2022-02-01
Release date:2022-12-28
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106.
Cell Rep, 42, 2023
7R1F
DownloadVisualize
BU of 7r1f by Molmil
Early transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106
Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ...
Authors:Cusack, S, Kouba, T.
Deposit date:2022-02-02
Release date:2022-12-28
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106.
Cell Rep, 42, 2023
4WTJ
DownloadVisualize
BU of 4wtj by Molmil
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-AUCC, RNA PRIMER 5'-PGG, MN2+, AND ADP
Descriptor: 1,2-ETHANEDIOL, 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Edwards, T.E, Appleby, T.C.
Deposit date:2014-10-30
Release date:2015-02-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for RNA replication by the hepatitis C virus polymerase.
Science, 347, 2015
4WTM
DownloadVisualize
BU of 4wtm by Molmil
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-UAGG, RNA PRIMER 5'-PCC, MN2+, AND UDP
Descriptor: CHLORIDE ION, MANGANESE (II) ION, RNA PRIMER CC, ...
Authors:Edwards, T.E, Appleby, T.C, Fox III, D.
Deposit date:2014-10-30
Release date:2015-02-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for RNA replication by the hepatitis C virus polymerase.
Science, 347, 2015
4WTI
DownloadVisualize
BU of 4wti by Molmil
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-ACGG, RNA PRIMER 5'-PCC, MN2+, AND GDP
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Edwards, T.E, Appleby, T.C.
Deposit date:2014-10-30
Release date:2015-02-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for RNA replication by the hepatitis C virus polymerase.
Science, 347, 2015
4WTK
DownloadVisualize
BU of 4wtk by Molmil
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-AGCC, RNA PRIMER 5'-PGG, MN2+, AND CDP
Descriptor: 1,2-ETHANEDIOL, 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Edwards, T.E, Appleby, T.C.
Deposit date:2014-10-30
Release date:2015-02-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for RNA replication by the hepatitis C virus polymerase.
Science, 347, 2015

227111

数据于2024-11-06公开中

PDB statisticsPDBj update infoContact PDBjnumon