PDB: 73665 resultsInfo pagesStatus searchChemie searchBIRD

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5CIZ	E. coli RNA polymerase alpha subunit CTD in complex with CAP and DNA: A(5)-tract binding site for alpha CTD Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA (5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*AP*GP*GP*CP*AP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*TP*GP*CP*CP*TP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3'), ... Authors: Napoli, A.A, Lawson, C.L. Deposit date: 2015-07-13 Release date: 2016-06-29 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (5.0098 Å) Cite: The RNA Polymerase alpha Subunit Recognizes the DNA Shape of the Upstream Promoter Element Biochemistry, 2020
5NT7	Structure of the LOTUS domain of Oskar in complex with the C-terminal RecA-like domain of Vasa Descriptor: ATP-dependent RNA helicase vasa, isoform A, Maternal effect protein oskar Authors: Jeske, M, Ephrussi, A, Mueller, C.W. Deposit date: 2017-04-27 Release date: 2017-05-17 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.4 Å) Cite: The LOTUS domain is a conserved DEAD-box RNA helicase regulator essential for the recruitment of Vasa to the germ plasm and nuage. Genes Dev., 31, 2017
3JWH	Crystal structure analysis of the methyltransferase domain of bacterial-AvHen1-C Descriptor: Hen1, S-ADENOSYL-L-HOMOCYSTEINE Authors: Huang, R.H, Chan, C.M, Zhou, C, Brunzelle, J.S. Deposit date: 2009-09-18 Release date: 2009-10-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and biochemical insights into 2'-O-methylation at the 3'-terminal nucleotide of RNA by Hen1. Proc.Natl.Acad.Sci.USA, 106, 2009
2EJT	Complex structure of Trm1 from Pyrococcus horikoshii with S-adenosyl-L-Methionine Descriptor: GLYCEROL, N(2),N(2)-dimethylguanosine tRNA methyltransferase, S-ADENOSYLMETHIONINE Authors: Ihsanawati, Shirouzu, M, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-20 Release date: 2007-09-25 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of tRNA N(2),N(2)-Guanosine Dimethyltransferase Trm1 from Pyrococcus horikoshii J.Mol.Biol., 383, 2008
3JWG	Crystal structure analysis of the methyltransferase domain of bacterial-CtHen1-C Descriptor: MAGNESIUM ION, Methyltransferase type 12 Authors: Huang, R.H, Chan, C.M, Zhou, C, Brunzelle, J.S. Deposit date: 2009-09-18 Release date: 2009-10-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural and biochemical insights into 2'-O-methylation at the 3'-terminal nucleotide of RNA by Hen1. Proc.Natl.Acad.Sci.USA, 106, 2009
2EGV	Crystal structure of rRNA methyltransferase with SAM ligand Descriptor: S-ADENOSYLMETHIONINE, UPF0088 protein aq_165 Authors: Dong, X, Shirouzu, M, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-02 Release date: 2007-09-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Crystal structure of rRNA methyltransferase with SAM ligand To be Published
3JWJ	Crystal structure analysis of the methyltransferase domain of bacterial-AvHen1-CN Descriptor: Hen1 Authors: Huang, R.H, Chan, C.M, Zhou, C, Brunzelle, J.S. Deposit date: 2009-09-18 Release date: 2009-10-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and biochemical insights into 2'-O-methylation at the 3'-terminal nucleotide of RNA by Hen1. Proc.Natl.Acad.Sci.USA, 106, 2009
4IMJ	Novel Modifications on C-terminal Domain of RNA Polymerase II can Fine-tune the Phosphatase Activity of Ssu72 Descriptor: CG14216, CTD, PHOSPHATE ION, ... Authors: Luo, Y, Yogesha, S.D, Zhang, Y. Deposit date: 2013-01-03 Release date: 2013-08-07 Last modified: 2013-10-23 Method: X-RAY DIFFRACTION (2.58 Å) Cite: Novel Modifications on C-terminal Domain of RNA Polymerase II Can Fine-tune the Phosphatase Activity of Ssu72. Acs Chem.Biol., 8, 2013
2DXS	Crystal structure of HCV NS5B RNA polymerase complexed with a tetracyclic inhibitor Descriptor: Genome polyprotein, N-[(13-CYCLOHEXYL-6,7-DIHYDROINDOLO[1,2-D][1,4]BENZOXAZEPIN-10-YL)CARBONYL]-2-METHYL-L-ALANINE Authors: Adachi, T, Tsuruha, J, Doi, S, Murase, K, Ikegashira, K, Watanabe, S, Uehara, K, Orita, T, Nomura, A, Kamada, M. Deposit date: 2006-08-30 Release date: 2006-12-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Discovery of Conformationally Constrained Tetracyclic Compounds as Potent Hepatitis C Virus NS5B RNA Polymerase Inhibitors J.Med.Chem., 49, 2006
2WHO	CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE FROM 1B GENOTYPE IN COMPLEX WITH A NON-NUCLEOSIDE INHIBITOR Descriptor: 2-(3-bromophenyl)-6-[(2-hydroxyethyl)amino]-1h-benzo[de]isoquinoline-1,3(2h)-dione, MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE Authors: Di Marco, S. Deposit date: 2009-05-05 Release date: 2009-08-11 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Identification and biological evaluation of a series of 1H-benzo[de]isoquinoline-1,3(2H)-diones as hepatitis C virus NS5B polymerase inhibitors. J. Med. Chem., 52, 2009
2EJU	Complex structure of Trm1 from Pyrococcus horikoshii with S-adenosyl-L-Homocystein Descriptor: GLYCEROL, N(2),N(2)-dimethylguanosine tRNA methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE Authors: Ihsanawati, Shirouzu, M, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-20 Release date: 2007-09-25 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal Structure of tRNA N(2),N(2)-Guanosine Dimethyltransferase Trm1 from Pyrococcus horikoshii J.Mol.Biol., 383, 2008
3L28	Crystal structure of Zaire Ebola VP35 interferon inhibitory domain K339A mutant Descriptor: CHLORIDE ION, Polymerase cofactor VP35, SODIUM ION, ... Authors: Leung, D.W, Prins, K.C, Borek, D.M, Farahbakhsh, M, Tufariello, J.M, Ramanan, P, Nix, J.C, Helgeson, L.A, Otwinowski, Z, Honzatko, R.B, Basler, C.F, Amarasinghe, G.K. Deposit date: 2009-12-14 Release date: 2010-01-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35. Nat.Struct.Mol.Biol., 17, 2010
5T9P	Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate Descriptor: CHLORIDE ION, Ribosome biogenesis protein 15, SULFATE ION Authors: Zhang, J, Gonzalez, E.L, Hall, M.T.T. Deposit date: 2016-09-09 Release date: 2016-11-16 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate. Nucleic Acids Res., 45, 2017
2ET5	Complex Between Ribostamycin and the 16S-RRNA A-Site Descriptor: 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', RIBOSTAMYCIN, SULFATE ION Authors: Westhof, E. Deposit date: 2005-10-27 Release date: 2005-12-13 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding. Nucleic Acids Res., 33, 2005
5CVZ	Investigation of RNA structure in satellite panicum mosaic virus - glutaraldehyde treated Descriptor: Coat protein Authors: Makino, D.L, Day, J, Larson, S.B, McPherson, A. Deposit date: 2015-07-27 Release date: 2017-10-11 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Investigation of RNA structure in satellite panicum mosaic virus. Virology, 351, 2006
3C0K	Crystal Structure of a ribosomal RNA methyltranferase Descriptor: UPF0064 protein yccW Authors: Subramanian, S, Jayaraman, S, Bujnicki, J. Deposit date: 2008-01-21 Release date: 2008-11-04 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes J.Mol.Biol., 383, 2008
5UDZ	Human LIN28A in complex with let-7f-1 microRNA pre-element Descriptor: Protein lin-28 homolog A, ZINC ION, let-7f-1 pre-element Authors: Nam, Y, Wang, L, Sliz, P. Deposit date: 2016-12-29 Release date: 2017-03-22 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2 Å) Cite: LIN28 Zinc Knuckle Domain Is Required and Sufficient to Induce let-7 Oligouridylation. Cell Rep, 18, 2017
5CW0	Investigation of RNA structure in satellite panicum mosaic virus Descriptor: Coat protein Authors: Makino, D.L, Day, J, Larson, S.B, McPherson, A. Deposit date: 2015-07-27 Release date: 2017-10-11 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (4.6 Å) Cite: Investigation of RNA structure in satellite panicum mosaic virus. Virology, 351, 2006
3JWI	Crystal structure analysis of the methyltransferase domain of bacterial-CtHen1-CN Descriptor: Methyltransferase type 12 Authors: Huang, R.H, Chan, C.M, Zhou, C, Brunzelle, J.S. Deposit date: 2009-09-18 Release date: 2009-10-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and biochemical insights into 2'-O-methylation at the 3'-terminal nucleotide of RNA by Hen1. Proc.Natl.Acad.Sci.USA, 106, 2009
2XYR	Crystal structure of the nsp16 nsp10 SARS coronavirus complex Descriptor: CHLORIDE ION, MAGNESIUM ION, NON-STRUCTURAL PROTEIN 10, ... Authors: Decroly, E, Debarnot, C, Ferron, F, Bouvet, M, Coutard, B, Imbert, I, Gluais, L, Papageorgiou, N, Ortiz-Lombardia, M, Lescar, J, Canard, B. Deposit date: 2010-11-18 Release date: 2011-10-26 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structure and Functional Analysis of the Sars-Coronavirus RNA CAP 2'-O-Methyltransferase Nsp10/Nsp16 Complex. Plos Pathog., 7, 2011
6WC5	Crystal Structure of a Ternary MEF2B/NKX2-5/myocardin enhancer DNA Complex Descriptor: Homeobox protein Nkx-2.5, Myocardin enhancer DNA, Myocyte-specific enhancer factor 2B Authors: Chen, L, Lei, X. Deposit date: 2020-03-29 Release date: 2020-07-22 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal Structures of Ternary Complexes of MEF2 and NKX2-5 Bound to DNA Reveal a Disease Related Protein-Protein Interaction Interface. J.Mol.Biol., 432, 2020
3L27	Crystal structure of Zaire Ebola VP35 interferon inhibitory domain R312A mutant Descriptor: CHLORIDE ION, GLYCEROL, PHOSPHATE ION, ... Authors: Leung, D.W, Prins, K.C, Borek, D.M, Farahbakhsh, M, Tufariello, J.M, Ramanan, P, Nix, J.C, Helgeson, L.A, Otwinowski, Z, Honzatko, R.B, Basler, C.F, Amarasinghe, G.K. Deposit date: 2009-12-14 Release date: 2010-01-26 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35. Nat.Struct.Mol.Biol., 17, 2010
1V2X	TrmH Descriptor: PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (Gm18) methyltransferase Authors: Nureki, O, Watanabe, K, Fukai, S, Ishii, R, Endo, Y, Hori, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-10-17 Release date: 2004-05-04 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Deep Knot Structure for Construction of Active Site and Cofactor Binding Site of tRNA Modification Enzyme STRUCTURE, 12, 2004
4IMI	Novel Modifications on C-terminal Domain of RNA Polymerase II can Fine- tune the Phosphatase Activity of Ssu72. Descriptor: CG14216, CTD, PHOSPHATE ION, ... Authors: Luo, Y, Yogesha, S.D, Zhang, Y. Deposit date: 2013-01-03 Release date: 2013-08-07 Last modified: 2013-10-30 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Novel Modifications on C-terminal Domain of RNA Polymerase II Can Fine-tune the Phosphatase Activity of Ssu72. Acs Chem.Biol., 8, 2013
2FZ2	Structure of Turnip Yellow Mosaic Virus at 100 K Descriptor: 5'-R(*CP*CP*C)-3', Coat protein Authors: Larson, S.B, Lucas, R.W, McPherson, A. Deposit date: 2006-02-08 Release date: 2006-02-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The RNA of turnip yellow mosaic virus exhibits icosahedral order. Virology, 334, 2005

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