3C0K

Crystal Structure of a ribosomal RNA methyltranferase

Summary for 3C0K

DescriptorUPF0064 protein yccW (2 entities in total)
Functional Keywordspua domain, adomet dependent methyltransferase fold, transferase
Biological sourceEscherichia coli K12
Cellular locationCytoplasm (Potential) P75876
Total number of polymer chains2
Total molecular weight89763.57
Authors
Subramanian, S.,Jayaraman, S.,Bujnicki, J. (deposition date: 2008-01-21, release date: 2008-11-04, Last modification date: 2011-07-13)
Primary citation
Sunita, S.,Tkaczuk, K.L.,Purta, E.,Kasprzak, J.M.,Douthwaite, S.,Bujnicki, J.M.,Sivaraman, J.
Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes
J.Mol.Biol., 383:652-666, 2008
PubMed: 18789337 (PDB entries with the same primary citation)
DOI: 10.1016/j.jmb.2008.08.062
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.19915 1.5% 2.8% 4.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
170172
PDB entries from 2020-10-21