PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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8IIB	Crystal structure of Israeli acute paralysis virus RNA-dependent RNA polymerase delta85 mutant (residues 86-546) Descriptor: CADMIUM ION, CHLORIDE ION, MAGNESIUM ION, ... Authors: Fang, X, Lu, G, Hou, C, Gong, P. Deposit date: 2023-02-24 Release date: 2023-06-07 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Unusual substructure conformations observed in crystal structures of a dicistrovirus RNA-dependent RNA polymerase suggest contribution of the N-terminal extension in proper folding. Virol Sin, 38, 2023
1MZP	Structure of the L1 protuberance in the ribosome Descriptor: 50s ribosomal protein L1P, MAGNESIUM ION, fragment of 23S rRNA Authors: Nikulin, A, Eliseikina, I, Tishchenko, S, Nevskaya, N, Davydova, N, Platonova, O, Piendl, W, Selmer, M, Liljas, A, Zimmermann, R, Garber, M, Nikonov, S. Deposit date: 2002-10-09 Release date: 2003-01-21 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structure of the L1 protuberance in the ribosome. Nat.Struct.Biol., 10, 2003
3VNV	Complex structure of viral RNA polymerase II Descriptor: 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, Elongation factor Ts, ... Authors: Takeshita, D, Tomita, K. Deposit date: 2012-01-18 Release date: 2012-08-08 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.604 Å) Cite: Mechanism for template-independent terminal adenylation activity of Q beta replicase Structure, 20, 2012
7N0B	Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (WT)-RNA complex Descriptor: CALCIUM ION, Non-structural protein 10, Proofreading exoribonuclease, ... Authors: Liu, C, Yang, Y. Deposit date: 2021-05-25 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural basis of mismatch recognition by a SARS-CoV-2 proofreading enzyme. Science, 373, 2021
7N0C	Cryo-EM structure of the monomeric form of SARS-CoV-2 nsp10-nsp14 (E191A)-RNA complex Descriptor: MAGNESIUM ION, Non-structural protein 10, Proofreading exoribonuclease, ... Authors: Liu, C, Yang, Y. Deposit date: 2021-05-25 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis of mismatch recognition by a SARS-CoV-2 proofreading enzyme. Science, 373, 2021
3VNU	Complex structure of viral RNA polymerase I Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Elongation factor Ts, ... Authors: Takeshita, D, Tomita, K. Deposit date: 2012-01-18 Release date: 2012-08-08 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Mechanism for template-independent terminal adenylation activity of Q beta replicase Structure, 20, 2012
3V97	Crystal structure of bifunctional methyltransferase YcbY (RlmLK) from Escherichia coli, SAH binding Descriptor: 6-O-octanoyl-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, GLYCEROL, Ribosomal RNA large subunit methyltransferase L, ... Authors: Su, X.D, Wang, K.T. Deposit date: 2011-12-23 Release date: 2012-02-29 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA Nucleic Acids Res., 40, 2012
5AJ3	Structure of the small subunit of the mammalian mitoribosome Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, MITORIBOSOMAL 12S RRNA, ... Authors: Greber, B.J, Bieri, P, Leibundgut, M, Leitner, A, Aebersold, R, Boehringer, D, Ban, N. Deposit date: 2015-02-20 Release date: 2015-04-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome. Science, 348, 2015
3VNB	Structural insights into small RNA sorting and mRNA binding by Arabidopsis Ago domains Descriptor: Protein argonaute 1, SULFATE ION Authors: Yuan, Y.A, Zha, X. Deposit date: 2012-01-11 Release date: 2012-10-10 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural insights into small RNA sorting and mRNA target binding by Arabidopsis Argonaute Mid domains Febs Lett., 586, 2012
5W5H	Human IFIT1 dimer with m7Gppp-AAAA Descriptor: Interferon-induced protein with tetratricopeptide repeats 1, RNA (5'-D(*(GTA))-R(P*AP*AP*A)-3') Authors: Abbas, Y.M, Martinez-Montero, S, Damha, M.J, Nagar, B. Deposit date: 2017-06-15 Release date: 2017-07-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Structural insights into IFIT1 dimerization and conformational changes associated with mRNA binding To Be Published
6M6B	Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase and ATP-gamma-S Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Shi, J, Wen, A, Feng, Y. Deposit date: 2020-03-14 Release date: 2020-10-14 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis of Mfd-dependent transcription termination. Nucleic Acids Res., 48, 2020
5IM0	Crystal structure of the RNA recognition motif of mRNA decay regulator AUF1 Descriptor: Heterogeneous nuclear ribonucleoprotein D0 Authors: Choi, Y.J, Chang, J.H. Deposit date: 2016-03-05 Release date: 2016-08-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of the N-Terminal RNA Recognition Motif of mRNA Decay Regulator AUF1. Biomed Res Int, 2016, 2016
2R7F	Crystal structure of ribonuclease II family protein from Deinococcus radiodurans, hexagonal crystal form. NorthEast Structural Genomics target DrR63 Descriptor: Ribonuclease II family protein Authors: Seetharaman, J, Neely, H, Forouhar, F, Wang, D, Fang, Y, Cunningham, K, Ma, L.-C, Xia, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) Deposit date: 2007-09-07 Release date: 2007-10-02 Last modified: 2018-01-24 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The Structure and Enzymatic Properties of a Novel RNase II Family Enzyme from Deinococcus radiodurans. J.Mol.Biol., 415, 2012
2R7D	Crystal structure of ribonuclease II family protein from Deinococcus radiodurans, triclinic crystal form. NorthEast Structural Genomics target DrR63 Descriptor: MAGNESIUM ION, Ribonuclease II family protein Authors: Seetharaman, J, Neely, H, Forouhar, F, Wang, D, Fang, Y, Cunningham, K, Ma, L.-C, Xia, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) Deposit date: 2007-09-07 Release date: 2007-10-02 Last modified: 2018-01-24 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The Structure and Enzymatic Properties of a Novel RNase II Family Enzyme from Deinococcus radiodurans. J.Mol.Biol., 415, 2012
5W7N	2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant Descriptor: DNA (5'-D(*AP*(US3)P*GP*(US3)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ... Authors: Fang, Z, Yang, F, Huang, Z. Deposit date: 2017-06-20 Release date: 2017-06-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.8 Å) Cite: 2-Se-T2/4-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant To Be Published
2R72	Crystal structure of infectious bursal disease virus VP1 polymerase, incubated with Mg2+ ion. Descriptor: INFECTIOUS BURSAL DISEASE VIRUS VP1 POLYMERASE, MAGNESIUM ION Authors: Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N. Deposit date: 2007-09-07 Release date: 2007-11-27 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Activation mechanism of a noncanonical RNA-dependent RNA polymerase. Proc.Natl.Acad.Sci.Usa, 104, 2007
3LYF	Crystal Structure of the Rift Valley Fever Virus Nucleocapsid Protein Descriptor: GLYCEROL, Nucleocapsid protein Authors: Raymond, D.D, Smith, J.L. Deposit date: 2010-02-26 Release date: 2010-06-30 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Structure of the Rift Valley fever virus nucleocapsid protein reveals another architecture for RNA encapsidation. Proc.Natl.Acad.Sci.USA, 107, 2010
8ISZ	Cryo-EM structure of Crt-SPARTA-gRNA-tDNA monomer Descriptor: DNA (45-mer), Piwi domain-containing protein, RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*U)-3'), ... Authors: Gao, X, Shang, K, Zhu, K, Wang, L, Mu, Z, Fu, X, Yu, X, Qin, B, Zhu, H, Ding, W, Cui, S. Deposit date: 2023-03-21 Release date: 2023-10-18 Last modified: 2024-02-07 Method: ELECTRON MICROSCOPY (3.27 Å) Cite: Nucleic-acid-triggered NADase activation of a short prokaryotic Argonaute. Nature, 625, 2024
8IT1	Cryo-EM structure of Crt-SPARTA-gRNA-tDNA tetramer (NADase active form) Descriptor: DNA (45-mer), Piwi domain-containing protein, RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*U)-3'), ... Authors: Gao, X, Shang, K, Zhu, K, Wang, L, Mu, Z, Fu, X, Yu, X, Qin, B, Zhu, H, Ding, W, Cui, S. Deposit date: 2023-03-21 Release date: 2023-11-08 Last modified: 2024-02-07 Method: ELECTRON MICROSCOPY (3.41 Å) Cite: Nucleic-acid-triggered NADase activation of a short prokaryotic Argonaute. Nature, 625, 2024
1EVP	CRYSTAL STRUCTURE OF THE CHIMERICAL DECAMER D(CCACTAGTG)R(G) Descriptor: DNA/RNA (5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP)-R(*G)-3') Authors: Wahl, M.C, Sundaralingam, M. Deposit date: 2000-04-20 Release date: 2000-05-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.8 Å) Cite: B-form to A-form conversion by a 3'-terminal ribose: crystal structure of the chimera d(CCACTAGTG)r(G). Nucleic Acids Res., 28, 2000
4PEG	Dbr1 in complex with guanosine-5'-monophosphate Descriptor: GLYCEROL, GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ... Authors: Montemayor, E.J, Katolik, A, Clark, N.E, Taylor, A.B, Schuermann, J.P, Combs, D.J, Johnsson, R, Holloway, S.P, Stevens, S.W, Damha, M.J, Hart, P.J. Deposit date: 2014-04-23 Release date: 2014-08-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1. Nucleic Acids Res., 42, 2014
4PEF	Dbr1 in complex with sulfate Descriptor: GLYCEROL, MANGANESE (II) ION, RNA lariat debranching enzyme, ... Authors: Montemayor, E.J, Katolik, A, Clark, N.E, Taylor, A.B, Schuermann, J.P, Combs, D.J, Johnsson, R, Holloway, S.P, Stevens, S.W, Damha, M.J, Hart, P.J. Deposit date: 2014-04-23 Release date: 2014-08-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1. Nucleic Acids Res., 42, 2014
6LD1	Zika NS5 polymerase domain Descriptor: 1,2-ETHANEDIOL, RNA-directed RNA polymerase NS5, ZINC ION Authors: El Sahili, A, Lescar, J. Deposit date: 2019-11-20 Release date: 2020-08-12 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase. J.Virol., 94, 2020
6LD5	Zika NS5 polymerase domain Descriptor: 2,4-dimethoxy-5-thiophen-2-yl-benzoic acid, RNA-directed RNA polymerase NS5, ZINC ION, ... Authors: El Sahili, A, Lescar, J. Deposit date: 2019-11-20 Release date: 2020-08-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase. J.Virol., 94, 2020
6LD4	Zika NS5 polymerase domain Descriptor: 2,4-dimethoxy-5-thiophen-2-yl-benzoic acid, 3-methoxybenzenesulfonamide, RNA-directed RNA polymerase NS5, ... Authors: El Sahili, A, Lescar, J. Deposit date: 2019-11-20 Release date: 2020-08-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase. J.Virol., 94, 2020

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