Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5LVZ
DownloadVisualize
BU of 5lvz by Molmil
Crystal structure of yeast 14-3-3 protein from Lachancea thermotolerans
Descriptor: KLTH0G14146p
Authors:Klima, M, Boura, E.
Deposit date:2016-09-14
Release date:2016-10-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of a yeast 14-3-3 protein from Lachancea thermotolerans in the unliganded form and bound to a human lipid kinase PI4KB-derived peptide reveal high evolutionary conservation.
Acta Crystallogr.,Sect.F, 72, 2016
2M0P
DownloadVisualize
BU of 2m0p by Molmil
Solution structure of the tenth complement type repeat of human megalin
Descriptor: CALCIUM ION, Low-density lipoprotein receptor-related protein 2
Authors:Dagil, R, Kragelund, B.
Deposit date:2012-11-01
Release date:2013-01-09
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Gentamicin binds to the megalin receptor as a competitive inhibitor using the common ligand binding motif of complement type repeats: insight from the nmr structure of the 10th complement type repeat domain alone and in complex with gentamicin.
J.Biol.Chem., 288, 2013
4LQ5
DownloadVisualize
BU of 4lq5 by Molmil
Crystal structure of ligand binding domain of CysB, a LysR member from Salmonella typhimurium LT2 in complex with effector ligand, O-acetylserine at 2.8A
Descriptor: HTH-type transcriptional regulator CysB, O-ACETYLSERINE
Authors:Mittal, M, Singh, A.K, Kumaran, S.
Deposit date:2013-07-17
Release date:2014-07-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.803 Å)
Cite:rystal structure of ligand binding domain of CysB, a LysR member from Salmonella typhimurium LT2 in complex with effector ligand, O-acetylserine at 2.8A
TO BE PUBLISHED
1H2R
DownloadVisualize
BU of 1h2r by Molmil
THREE-DIMENSIONAL STRUCTURE OF NI-FE HYDROGENASE FROM DESULFIVIBRIO VULGARIS MIYAZAKI F IN THE REDUCED FORM AT 1.4 A RESOLUTION
Descriptor: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
Authors:Higuchi, Y, Ogata, H.
Deposit date:1999-06-14
Release date:2000-01-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.
Structure Fold.Des., 7, 1999
1ZBC
DownloadVisualize
BU of 1zbc by Molmil
Crystal Structure of the porcine signalling protein liganded with the peptide Trp-Pro-Trp (WPW) at 2.3 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3 mer peptide, signal processing protein
Authors:Srivastava, D.B, Kaur, P, Kumar, J, Somvanshi, R.K, Sharma, S, Dey, S, Singh, T.P.
Deposit date:2005-04-08
Release date:2005-04-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Crystal Structure of the porcine signalling protein liganded with the peptide Trp-Pro-Trp (WPW) at 2.3 A resolution
To be Published
5LOO
DownloadVisualize
BU of 5loo by Molmil
Structure of full length unliganded CodY from Bacillus subtilis
Descriptor: GTP-sensing transcriptional pleiotropic repressor CodY
Authors:Wilkinson, A.J, Levdikov, V.M, Blagova, E.V.
Deposit date:2016-08-09
Release date:2017-01-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Structure of the Branched-chain Amino Acid and GTP-sensing Global Regulator, CodY, from Bacillus subtilis.
J. Biol. Chem., 292, 2017
1O9I
DownloadVisualize
BU of 1o9i by Molmil
Crystal structure of the Y42F mutant of manganese catalase from Lactobacillus plantarum at 1.33A resolution
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, MANGANESE (III) ION, ...
Authors:Barynin, V.V, Whittaker, M.M, Whittaker, J.W.
Deposit date:2002-12-13
Release date:2003-12-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Outer Sphere Mutagenesis of Lactobacillus Plantarum Manganese Catalase Disrupts the Cluster Core. Mechanistic Implications.
Eur.J.Biochem., 270, 2003
2J4K
DownloadVisualize
BU of 2j4k by Molmil
Crystal structure of uridylate kinase from Sulfolobus solfataricus in complex with UMP to 2.2 Angstrom resolution
Descriptor: CADMIUM ION, MAGNESIUM ION, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Jensen, K.S, Johansson, E, Jensen, K.F.
Deposit date:2006-09-01
Release date:2007-02-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
Biochemistry, 46, 2007
2FVY
DownloadVisualize
BU of 2fvy by Molmil
High Resolution Glucose Bound Crystal Structure of GGBP
Descriptor: ACETATE ION, CALCIUM ION, CARBON DIOXIDE, ...
Authors:Borrok, M.J, Kiessling, L.L, Forest, K.T.
Deposit date:2006-01-31
Release date:2007-02-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Conformational changes of glucose/galactose-binding protein illuminated by open, unliganded, and ultra-high-resolution ligand-bound structures.
Protein Sci., 16, 2007
7YXZ
DownloadVisualize
BU of 7yxz by Molmil
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Coenzyme A
Descriptor: COENZYME A, Phosphopantetheine adenylyltransferase
Authors:Thomas, S.E, Coyne, A.G, Blundell, T.L.
Deposit date:2022-02-17
Release date:2022-07-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.779 Å)
Cite:Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design.
Front Mol Biosci, 9, 2022
7TXE
DownloadVisualize
BU of 7txe by Molmil
Plasmodium falciparum Cyt c2 DSD
Descriptor: Cytochrome c2, HEME C
Authors:Hill, C.P, Wienkers, H.J, Whitby, F.G.
Deposit date:2022-02-08
Release date:2023-05-10
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Direct tests of cytochrome c and c1 functions in the electron transport chain of malaria parasites
Proc Natl Acad Sci U S A, 120, 2023
1ZDS
DownloadVisualize
BU of 1zds by Molmil
Crystal Structure of Met150Gly AfNiR with Acetamide Bound
Descriptor: ACETAMIDE, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Wijma, H.J, MacPherson, I.S, Alexandre, M, Diederix, R.E.M, Canters, G.W, Murphy, M.E.P, Verbeet, M.P.
Deposit date:2005-04-14
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A rearranging ligand enables allosteric control of catalytic activity in copper-containing nitrite reductase.
J.Mol.Biol., 358, 2006
5FJV
DownloadVisualize
BU of 5fjv by Molmil
Crystal structure of the extracellular domain of alpha2 nicotinic acetylcholine receptor in pentameric assembly
Descriptor: EPIBATIDINE, NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-2
Authors:Giastas, P, Kouvatsos, N, Chroni-Tzartou, D, Tzartos, S.J.
Deposit date:2015-10-13
Release date:2016-08-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of a Human Neuronal Nachr Extracellular Domain in Pentameric Assembly: Ligand-Bound Alpah2 Homopentamer.
Proc.Natl.Acad.Sci.USA, 113, 2016
4CAK
DownloadVisualize
BU of 4cak by Molmil
Three-dimensional reconstruction of intact human integrin alphaIIbbeta3 in a phospholipid bilayer nanodisc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Integrin alpha-IIb, ...
Authors:Choi, W.S, Rice, W.J, Stokes, D.L, Coller, B.S.
Deposit date:2013-10-08
Release date:2013-10-30
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (20.5 Å)
Cite:Three-Dimensional Reconstruction of Intact Human Integrin Alphaiibbeta3; New Implications for Activation-Dependent Ligand Binding.
Blood, 122, 2013
5LNH
DownloadVisualize
BU of 5lnh by Molmil
Structure of full length Unliganded CodY from Bacillus subtilis
Descriptor: GTP-sensing transcriptional pleiotropic repressor CodY, SULFATE ION
Authors:Wilkinson, A.J, Levdikov, V.M, Blagova, E.V.
Deposit date:2016-08-04
Release date:2017-01-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Branched-chain Amino Acid and GTP-sensing Global Regulator, CodY, from Bacillus subtilis.
J. Biol. Chem., 292, 2017
2JN3
DownloadVisualize
BU of 2jn3 by Molmil
NMR structure of cl-BABP complexed to chenodeoxycholic acid
Descriptor: CHENODEOXYCHOLIC ACID, Fatty acid-binding protein, liver
Authors:Eliseo, T, Ragona, L, Catalano, M, Assfalf, M, Paci, M, Zetta, L, Molinari, H, Cicero, D.O.
Deposit date:2006-12-22
Release date:2007-07-03
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Structural and dynamic determinants of ligand binding in the ternary complex of chicken liver bile acid binding protein with two bile salts revealed by NMR
Biochemistry, 46, 2007
6H1N
DownloadVisualize
BU of 6h1n by Molmil
Crystal Structure of a Zebra-fish pro-survival protein NRZ-apo
Descriptor: ACETATE ION, BCL2-like 10 (Apoptosis facilitator), SULFATE ION
Authors:Suraweera, C.D, Hinds, M.G, Kvansakul, M.
Deposit date:2018-07-12
Release date:2018-10-03
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:A structural investigation of NRZ mediated apoptosis regulation in zebrafish.
Cell Death Dis, 9, 2018
1FI7
DownloadVisualize
BU of 1fi7 by Molmil
Solution structure of the imidazole complex of cytochrome C
Descriptor: CYTOCHROME C, HEME C, IMIDAZOLE
Authors:Banci, L, Bertini, I, Liu, G, Lu, J, Reddig, T, Tang, W, Wu, Y, Zhu, D.
Deposit date:2000-08-03
Release date:2000-08-23
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Effects of extrinsic imidazole ligation on the molecular and electronic structure of cytochrome c
J.Biol.Inorg.Chem., 6, 2001
4OAL
DownloadVisualize
BU of 4oal by Molmil
Crystal structure of maize cytokinin oxidase/dehydrogenase 4 (ZmCKO4) in complex with phenylurea inhibitor CPPU in alternative spacegroup
Descriptor: 1-(2-chloropyridin-4-yl)-3-phenylurea, Cytokinin dehydrogenase 4, DIMETHYL SULFOXIDE, ...
Authors:Kopecny, D, Morera, S, Vigouroux, A, Koncitikova, R.
Deposit date:2014-01-05
Release date:2015-04-01
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
Febs J., 283, 2016
5A15
DownloadVisualize
BU of 5a15 by Molmil
Crystal structure of the BTB domain of human KCTD16
Descriptor: BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD16
Authors:Pinkas, D.M, Sanvitale, C.E, Solcan, N, Goubin, S, Canning, P, Dixon Clarke, S.E, Talon, R, Wiggers, H.J, Fitzpatrick, F, Tallant, C, Kopec, J, Chalk, R, Doutch, J, Krojer, T, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.
Deposit date:2015-04-28
Release date:2015-11-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structural complexity in the KCTD family of Cullin3-dependent E3 ubiquitin ligases.
Biochem. J., 474, 2017
4BSJ
DownloadVisualize
BU of 4bsj by Molmil
Crystal structure of VEGFR-3 extracellular domains D4-5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 3
Authors:Leppanen, V.-M, Tvorogov, D, Kisko, K, Prota, A.E, Jeltsch, M, Anisimov, A, Markovic-Mueller, S, Stuttfeld, E, Goldie, K.N, Ballmer-Hofer, K, Alitalo, K.
Deposit date:2013-06-10
Release date:2013-07-31
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Mechanistic Insights Into Vegfr-3 Ligand Binding and Activation
Proc.Natl.Acad.Sci.USA, 110, 2013
1ZEF
DownloadVisualize
BU of 1zef by Molmil
structure of alkaline phosphatase from human placenta in complex with its uncompetitive inhibitor L-Phe
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Alkaline phosphatase, CALCIUM ION, ...
Authors:Llinas, P, Stura, E.A, Menez, A, Kiss, Z, Stigbrand, T, Millan, J.L, Le Du, M.H.
Deposit date:2005-04-18
Release date:2005-06-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Studies of Human Placental Alkaline Phosphatase in Complex with Functional Ligands.
J.Mol.Biol., 350, 2005
4EPC
DownloadVisualize
BU of 4epc by Molmil
Crystal structure of Autolysin repeat domains from Staphylococcus epidermidis
Descriptor: N-acetylmuramoyl-L-alanine amidase
Authors:Zoll, S, Stehle, T.
Deposit date:2012-04-17
Release date:2012-06-06
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Ligand-binding properties and conformational dynamics of autolysin repeat domains in staphylococcal cell wall recognition.
J.Bacteriol., 194, 2012
2Y4O
DownloadVisualize
BU of 2y4o by Molmil
Crystal Structure of PaaK2 in complex with phenylacetyl adenylate
Descriptor: 5'-O-[HYDROXY(PHENYLACETYL)PHOSPHORYL]ADENOSINE, BETA-MERCAPTOETHANOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Law, A, Boulanger, M.J.
Deposit date:2011-01-07
Release date:2011-03-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Defining a Structural and Kinetic Rationale for Paralogous Copies of Phenylacetate-Coa Ligases from the Cystic Fibrosis Pathogen Burkholderia Cenocepacia J2315.
J.Biol.Chem., 286, 2011
1JDO
DownloadVisualize
BU of 1jdo by Molmil
SPERM WHALE MYOGLOBIN (FERROUS, NITRIC OXIDE BOUND)
Descriptor: MYOGLOBIN, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Brucker, E.A, Phillips Jr, G.N.
Deposit date:1998-02-10
Release date:1998-05-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Nitric oxide myoglobin: crystal structure and analysis of ligand geometry.
Proteins, 30, 1998

238582

数据于2025-07-09公开中

PDB statisticsPDBj update infoContact PDBjnumon