Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8RFF
DownloadVisualize
BU of 8rff by Molmil
Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 6A6 refined against the anomalous diffraction data
Descriptor: 1,3-benzothiazol-2-amine, Host translation inhibitor nsp1
Authors:Ma, S, Damfo, S, Mykhaylyk, V, Kozielski, F.
Deposit date:2023-12-12
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:High-confidence placement of low-occupancy fragments into electron density using the anomalous signal of sulfur and halogen atoms.
Acta Crystallogr D Struct Biol, 80, 2024
2YAC
DownloadVisualize
BU of 2yac by Molmil
Crystal structure of Polo-like kinase 1 in complex with NMS-P937
Descriptor: 1-(2-HYDROXYETHYL)-8-[[5-(4-METHYLPIPERAZIN-1-YL)-2-(TRIFLUOROMETHOXY)PHENYL]AMINO]-4,5-DIHYDROPYRIMIDO[5,4-G]INDAZOLE-3-CARBOXAMIDE, L(+)-TARTARIC ACID, SERINE/THREONINE-PROTEIN KINASE PLK1, ...
Authors:Bertrand, J.A, Bossi, R.T.
Deposit date:2011-02-18
Release date:2011-04-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Nms-P937, a 4,5-Dihydro-1H-Pyrazolo[4,3-H]Quinazoline Derivative as Potent and Selective Polo-Like Kinase 1 Inhibitor.
Bioorg.Med.Chem.Lett., 21, 2011
5DHR
DownloadVisualize
BU of 5dhr by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Descriptor: 5'-azido-8-[(2-{[2-(1H-benzimidazol-2-yl)ethyl]amino}-2-oxoethyl)sulfanyl]-5'-deoxyadenosine, CITRIC ACID, GLYCEROL, ...
Authors:Gelin, M, Paoletti, J, Assairi, L, Huteau, V, Pochet, S, Labesse, G.
Deposit date:2015-08-31
Release date:2016-09-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:8-Thioalkyl-adenosine derivatives inhibit Listeria monocytogenes NAD kinase through a novel binding mode.
Eur.J.Med.Chem., 124, 2016
8RF4
DownloadVisualize
BU of 8rf4 by Molmil
Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 9D4 refined against the anomalous diffraction data
Descriptor: 4-chloranyl-1~{H}-indazol-3-amine, Host translation inhibitor nsp1
Authors:Ma, S, Damfo, S, Mykhaylyk, V, Kozielski, F.
Deposit date:2023-12-12
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:High-confidence placement of low-occupancy fragments into electron density using the anomalous signal of sulfur and halogen atoms.
Acta Crystallogr D Struct Biol, 80, 2024
5DI3
DownloadVisualize
BU of 5di3 by Molmil
Crystal structure of Arl13B in complex with Arl3 of Chlamydomonas reinhardtii
Descriptor: ADP-ribosylation factor-like protein 13B, ADP-ribosylation factor-like protein 3, MAGNESIUM ION, ...
Authors:Gotthardt, K, Lokaj, M, Falk, N, Koerner, C, Giessl, A, Wittinghofer, A.
Deposit date:2015-08-31
Release date:2015-11-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A G-protein activation cascade from Arl13B to Arl3 and implications for ciliary targeting of lipidated proteins.
Elife, 4, 2015
8RF8
DownloadVisualize
BU of 8rf8 by Molmil
Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 11A7_AL6 refined against the anomalous diffraction data
Descriptor: 6-bromanyl-1,3-benzothiazol-2-amine, Host translation inhibitor nsp1
Authors:Ma, S, Damfo, S, Mykhaylyk, V, Kozielski, F.
Deposit date:2023-12-12
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:High-confidence placement of low-occupancy fragments into electron density using the anomalous signal of sulfur and halogen atoms.
Acta Crystallogr D Struct Biol, 80, 2024
8RPL
DownloadVisualize
BU of 8rpl by Molmil
AMP-forming acetyl-CoA synthetase from Chloroflexota bacterium with bound acetyl AMP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Acetate--CoA ligase, MAGNESIUM ION, ...
Authors:Striska, K, Palm, G.J, Lammers, M.
Deposit date:2024-01-16
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:The AMP-forming acetyl-CoA-synthetase is regulated by lysine acetylation and has an intrinsic phosphotransacetylase activity to adjust its activity to the cellular acetyl-phosphate level
Nature Comm, 2024
8RT9
DownloadVisualize
BU of 8rt9 by Molmil
Stalk complex full-length structure (TrwJ/VirB5-TrwI/VirB6) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwI protein, TrwJ protein
Authors:Mace, K, Waksman, G.
Deposit date:2024-01-25
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J., 2024
8RNU
DownloadVisualize
BU of 8rnu by Molmil
CryoEM structure of recombinant human Bri2 BRICHOS oligomers
Descriptor: Integral membrane protein 2B
Authors:Chen, G, Johansson, J, Hebert, H.
Deposit date:2024-01-11
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Molecular basis for different substrate-binding sites and chaperone functions of the BRICHOS domain.
Protein Sci., 33, 2024
2G04
DownloadVisualize
BU of 2g04 by Molmil
Crystal structure of fatty acid-CoA racemase from Mycobacterium tuberculosis H37Rv
Descriptor: PROBABLE FATTY-ACID-CoA RACEMASE FAR
Authors:Lee, K.S, Park, S.M, Rhee, K.H, Bang, W.G, Hwang, K.Y, Chi, Y.M.
Deposit date:2006-02-11
Release date:2007-01-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of fatty acid-CoA racemase from Mycobacterium tuberculosis H37Rv
Proteins, 64, 2006
8RYT
DownloadVisualize
BU of 8ryt by Molmil
Structural characterization of Thogoto Virus nucleoprotein provides insights into RNA encapsidation and assembly
Descriptor: Nucleoprotein
Authors:Roske, Y, Mikirtumov, V, Daumke, O, Kudryashev, M, Dick, A.
Deposit date:2024-02-09
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural characterization of Thogoto Virus nucleoprotein provides insights into viral RNA encapsidation and RNP assembly.
Structure, 2024
2G47
DownloadVisualize
BU of 2g47 by Molmil
Crystal structure of human insulin-degrading enzyme in complex with amyloid-beta (1-40)
Descriptor: 1,4-DIETHYLENE DIOXIDE, Insulin-degrading enzyme, amyloid protein beta A4
Authors:Shen, Y, Tang, W.-J.
Deposit date:2006-02-21
Release date:2006-10-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism.
Nature, 443, 2006
8RT8
DownloadVisualize
BU of 8rt8 by Molmil
Conformation-C of the full-length outer membrane core complex (TrwH/VirB7, TrwF/VirB9, TrwE/VirB10CTD) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH protein
Authors:Mace, K, Waksman, G.
Deposit date:2024-01-25
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J., 2024
2G1G
DownloadVisualize
BU of 2g1g by Molmil
Solution structure of the anticodon loop of S. Pombe tRNAi including the naturally occurring N6-threonyl adenine
Descriptor: 5'-R(*AP*CP*GP*GP*GP*CP*UP*CP*AP*UP*(T6A)P*AP*CP*CP*CP*GP*U)-3'
Authors:Lescrinier, E.
Deposit date:2006-02-14
Release date:2006-06-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif
Nucleic Acids Res., 34, 2006
2G1W
DownloadVisualize
BU of 2g1w by Molmil
NMR structure of the Aquifex aeolicus tmRNA pseudoknot PK1
Descriptor: 5'-R(*GP*GP*GP*GP*UP*GP*GP*CP*UP*CP*CP*CP*CP*UP*AP*AP*CP*AP*GP*CP*CP*G)-3'
Authors:Nonin-Lecomte, S, Dardel, F.
Deposit date:2006-02-15
Release date:2006-04-11
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR structure of the Aquifex aeolicus tmRNA pseudoknot PK1: new insights into the recoding event of the ribosomal trans-translation.
Nucleic Acids Res., 34, 2006
8RT7
DownloadVisualize
BU of 8rt7 by Molmil
Conformation-B of the full-length outer membrane core complex (TrwH/VirB7, TrwF/VirB9, TrwE/VirB10CTD) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH
Authors:Mace, K, Waksman, G.
Deposit date:2024-01-25
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J., 2024
5KJF
DownloadVisualize
BU of 5kjf by Molmil
V222I horse liver alcohol dehydrogenase complexed with NAD+ and trifluoroethanol
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Alcohol dehydrogenase E chain, NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM), ...
Authors:Plapp, B.V.
Deposit date:2016-06-18
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Contribution of buried distal amino acid residues in horse liver alcohol dehydrogenase to structure and catalysis.
Protein Sci., 27, 2018
2G66
DownloadVisualize
BU of 2g66 by Molmil
Crystal structure of a collagen-like peptide with 3(S)Hyp in the Xaa position
Descriptor: collagen
Authors:Schumacher, M.A, Mizuno, K, Bachinger, H.P.
Deposit date:2006-02-24
Release date:2006-08-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crystal Structure of a Collagen-like Polypeptide with 3(S)-Hydroxyproline Residues in the Xaa Position Forms a Standard 7/2 Collagen Triple Helix
J.Biol.Chem., 281, 2006
2G29
DownloadVisualize
BU of 2g29 by Molmil
crystal structure of the periplasmic nitrate-binding protein NrtA from Synechocystis PCC 6803
Descriptor: NITRATE ION, Nitrate transport protein nrtA
Authors:Koropatkin, N.M, Pakrasi, H.B, Smith, T.J.
Deposit date:2006-02-15
Release date:2006-07-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity
Proc.Natl.Acad.Sci.Usa, 103, 2006
5DIU
DownloadVisualize
BU of 5diu by Molmil
The Fk1 domain of FKBP51 in complex with the new synthetic ligand 2-(3-((R)-1-((S)-1-((S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)acetyl)piperidine-2-carboxamido)-3-(3,4-dimethoxyphenyl)propyl)phenoxy)acetic acid
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP5, {3-[(1R)-1-[({(2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)acetyl]piperidin-2-yl}carbonyl)amino]-3-(3,4-dimethoxyphenyl)propyl]phenoxy}acetic acid
Authors:Gaali, S, Feng, X, Sippel, C, Bracher, A, Hausch, F.
Deposit date:2015-09-01
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Rapid, Structure-Based Exploration of Pipecolic Acid Amides as Novel Selective Antagonists of the FK506-Binding Protein 51.
J.Med.Chem., 59, 2016
5DHP
DownloadVisualize
BU of 5dhp by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Descriptor: 8-({2-oxo-2-[(2-phenylethyl)amino]ethyl}sulfanyl)adenosine, CITRIC ACID, GLYCEROL, ...
Authors:Gelin, M, Paoletti, J, Assairi, L, Huteau, V, Pochet, S, Labesse, G.
Deposit date:2015-08-31
Release date:2016-09-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:8-Thioalkyl-adenosine derivatives inhibit Listeria monocytogenes NAD kinase through a novel binding mode.
Eur.J.Med.Chem., 124, 2016
8RT4
DownloadVisualize
BU of 8rt4 by Molmil
O-layer structure (TrwH/VirB7, TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH protein
Authors:Mace, K, Waksman, G.
Deposit date:2024-01-25
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.46 Å)
Cite:Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J., 2024
2YRN
DownloadVisualize
BU of 2yrn by Molmil
Solution structure of the CH domain from Human Neuron navigator 2
Descriptor: Neuron navigator 2 isoform 4
Authors:Tomizawa, T, Tochio, N, Koshiba, S, Inoue, M, Nakamura, Y, Furukawa, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-02
Release date:2008-02-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the CH domain from Human Neuron navigator 2
To be Published
2G6U
DownloadVisualize
BU of 2g6u by Molmil
Solution structures of MP-2: a high affinity miniprotein ligand to Streptavidin
Descriptor: Miniprotein MP2
Authors:Fox, R.O, Mukherjee, M.
Deposit date:2006-02-25
Release date:2007-04-10
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structural studies of high affinity miniprotein ligands to Streptavidin
To be Published
2YSA
DownloadVisualize
BU of 2ysa by Molmil
Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
Descriptor: Retinoblastoma-binding protein 6, ZINC ION
Authors:Ohnishi, S, Sato, M, Tochio, N, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
To be Published

222415

数据于2024-07-10公开中

PDB statisticsPDBj update infoContact PDBjnumon