PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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6ZMC	Structure of the tRNA-Monooxygenase enzyme MiaE frozen under 2000 bar using the high pressure freezing method Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ARGON, CALCIUM ION, ... Authors: Carpentier, P, Atta, M. Deposit date: 2020-07-02 Release date: 2020-09-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural, biochemical and functional analyses of tRNA-monooxygenase enzyme MiaE from Pseudomonas putida provide insights into tRNA/MiaE interaction. Nucleic Acids Res., 48, 2020
6PQ3	Crystal structure of GDP-bound KRAS with ten residues long internal tandem duplication in the switch II region Descriptor: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Dharmaiah, S, Chan, A.H, Tran, T.H, Simanshu, D.K. Deposit date: 2019-07-08 Release date: 2020-05-20 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.75 Å) Cite: RASinternal tandem duplication disrupts GTPase-activating protein (GAP) binding to activate oncogenic signaling. J.Biol.Chem., 295, 2020
6ZMA	Structure of the tRNA-Monooxygenase enzyme MiaE frozen under 140 bar of krypton using the soak and freeze methodology Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... Authors: Carpentier, P, Atta, M. Deposit date: 2020-07-02 Release date: 2020-09-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural, biochemical and functional analyses of tRNA-monooxygenase enzyme MiaE from Pseudomonas putida provide insights into tRNA/MiaE interaction. Nucleic Acids Res., 48, 2020
4JAH	Crystal structure of 2-Selenouridine containing RNA Descriptor: POTASSIUM ION, RNA (5'-R(*GP*UP*GP*UP*AP*(RUS)P*AP*C)-3') Authors: Jiang, S, Gan, J, Sun, H, Huang, Z. Deposit date: 2013-02-18 Release date: 2014-01-29 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structure of 2-Selenouridine containing RNA To be Published
3FAR	Cation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation Site Descriptor: COBALT (II) ION, POTASSIUM ION, RNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3') Authors: Ennifar, E, Dumas, P. Deposit date: 2008-11-18 Release date: 2009-11-24 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Cation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation Site To be Published
7N2S	AS3.1-PRPF3-HLA*B27 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, GLYCEROL, ... Authors: Yang, X, Jude, K.M, Garcia, K.C. Deposit date: 2021-05-29 Release date: 2022-12-07 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides. Nature, 612, 2022
7N2R	AS4.3-PRPF3-HLA*B27 Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AS4.3 T cell receptor alpha chain, ... Authors: Yang, X, Jude, K.M, Garcia, K.C. Deposit date: 2021-05-29 Release date: 2022-12-07 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides. Nature, 612, 2022
7N2N	TCR-antigen complex AS4.2-PRPF3-HLA*B27 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, GLYCEROL, ... Authors: Yang, X, Jude, K.M, Garcia, K.C. Deposit date: 2021-05-29 Release date: 2022-12-07 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides. Nature, 612, 2022
3DVV	Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe) Descriptor: CHLORIDE ION, HIV-1 genomic RNA, POTASSIUM ION, ... Authors: Ennifar, E, Dumas, P, Olieric, V. Deposit date: 2008-07-21 Release date: 2008-08-12 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: A fast strategy for Selenium derivatization and phasing of RNA structures To be Published
3GFK	Crystal structure of Bacillus subtilis Spx/RNA polymerase alpha subunit C-terminal domain complex Descriptor: DNA-directed RNA polymerase subunit alpha, Regulatory protein spx Authors: Lamour, V, Westblade, L.F, Campbell, E.A, Darst, S.A. Deposit date: 2009-02-27 Release date: 2009-03-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of the in vivo-assembled Bacillus subtilis Spx/RNA polymerase alpha subunit C-terminal domain complex J.Struct.Biol., 168, 2009
3HY0	Crystal Structure of catalytic fragment of E. coli AlaRS G237A in complex with GlySA Descriptor: 2-HYDROXYETHYL DISULFIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-(glycylsulfamoyl)adenosine, ... Authors: Guo, M, Yang, X.-L, Schimmel, P. Deposit date: 2009-06-22 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma. Nature, 462, 2009
3HXW	Crystal Structure of catalytic fragment of E. coli AlaRS in complex with SerSA Descriptor: 2-HYDROXYETHYL DISULFIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, ... Authors: Guo, M, Yang, X.-L, Schimmel, P. Deposit date: 2009-06-22 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma. Nature, 462, 2009
3HXU	Crystal Structure of catalytic fragment of E. coli AlaRS in complex with AlaSA Descriptor: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, 2-HYDROXYETHYL DISULFIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Guo, M, Yang, X.-L, Schimmel, P. Deposit date: 2009-06-22 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma. Nature, 462, 2009
3HXV	Crystal Structure of catalytic fragment of E. coli AlaRS in complex with GlySA Descriptor: 2-HYDROXYETHYL DISULFIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-(glycylsulfamoyl)adenosine, ... Authors: Guo, M, Yang, X.-L, Schimmel, P. Deposit date: 2009-06-22 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma. Nature, 462, 2009
3HXY	Crystal Structure of catalytic fragment of E. coli AlaRS in complex with AMPPCP, Ala-AMP and PCP Descriptor: 2-HYDROXYETHYL DISULFIDE, 5'-O-[(R)-{[(2S)-2-aminopropanoyl]oxy}(hydroxy)phosphoryl]adenosine, Alanyl-tRNA synthetase, ... Authors: Guo, M, Yang, X.-L, Schimmel, P. Deposit date: 2009-06-22 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma. Nature, 462, 2009
3HY1	Crystal Structure of catalytic fragment of E. coli AlaRS G237A in complex with SerSA Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-HYDROXYETHYL DISULFIDE, 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, ... Authors: Guo, M, Yang, X.-L, Schimmel, P. Deposit date: 2009-06-22 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma. Nature, 462, 2009
3HXZ	Crystal Structure of catalytic fragment of E. coli AlaRS G237A in complex with AlaSA Descriptor: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, 2-HYDROXYETHYL DISULFIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Guo, M, Yang, X.-L, Schimmel, P. Deposit date: 2009-06-22 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma. Nature, 462, 2009
3BLO	TGT mutant in complex with queuine Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, GLYCEROL, Queuine tRNA-ribosyltransferase, ... Authors: Tidten, N, Heine, A, Reuter, K, Klebe, G. Deposit date: 2007-12-11 Release date: 2008-12-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor Plos One, 8, 2013
1RI3	Structure and mechanism of mRNA cap (guanine N-7) methyltransferase Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, mRNA CAPPING ENZYME Authors: Fabrega, C, Hausmann, S, Shen, V, Shuman, S, Lima, C.D. Deposit date: 2003-11-16 Release date: 2004-02-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure and mechanism of mRNA cap (Guanine-n7) methyltransferase Mol.Cell, 13, 2004
1RI4	Structure and mechanism of mRNA cap (guanine N-7) methyltransferase Descriptor: S-ADENOSYLMETHIONINE, mRNA CAPPING ENZYME Authors: Fabrega, C, Hausmann, S, Shen, V, Shuman, S, Lima, C.D. Deposit date: 2003-11-16 Release date: 2004-02-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure and mechanism of mRNA cap (Guanine-n7) methyltransferase Mol.Cell, 13, 2004
3BLL	TGT mutant in complex with Boc-preQ1 Descriptor: GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION, ... Authors: Tidten, N, Heine, A, Reuter, K, Klebe, G. Deposit date: 2007-12-11 Release date: 2008-12-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.26 Å) Cite: Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor Plos One, 8, 2013
2LQK	NMR solution structure of the N-terminal domain of the CdnL protein from Thermus thermophilus Descriptor: Transcriptional regulator Authors: Jimenez, M, Padmanabhan, S. Deposit date: 2012-03-09 Release date: 2012-08-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR structure note: N-terminal domain of Thermus thermophilus CdnL. J.Biomol.Nmr, 53, 2012
1WWR	Crystal structure of tRNA adenosine deaminase TadA from Aquifex aeolicus Descriptor: ZINC ION, tRNA adenosine deaminase TadA Authors: Kuratani, M, Ishii, R, Bessho, Y, Fukunaga, R, Sengoku, T, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-01-12 Release date: 2005-02-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus J.Biol.Chem., 280, 2005
2ZXF	Crystal structure of human glycyl-trna synthetase (GLYRS) in complex with AP4A (cocrystallized with AP4A) Descriptor: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Glycyl-tRNA synthetase Authors: Guo, R.T, Yang, X.L, Schimmel, P. Deposit date: 2008-12-23 Release date: 2009-08-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis To be Published
2ZT5	Crystal structure of human glycyl-trna synthetase (GLYRS) in complex with AP4A (cocrystallized with ATP) Descriptor: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Glycyl-tRNA synthetase Authors: Guo, R.T, Yang, X.L, Schimmel, P. Deposit date: 2008-09-19 Release date: 2009-08-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis To be Published

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