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1FHZ	PSORALEN CROSS-LINKED D(CCGGTACCGG) FORMS HOLLIDAY JUNCTION Descriptor: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') Authors: Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S. Deposit date: 2000-08-02 Release date: 2001-04-21 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions. J.Mol.Biol., 308, 2001
2NTZ	Structure of a ParB-DNA complex reveals a double B-box interaction Descriptor: 5'-D(*CP*GP*TP*GP*AP*AP*AP*TP*CP*GP*CP*CP*AP*CP*GP*A)-3', 5'-D(*TP*CP*GP*TP*GP*GP*CP*GP*AP*TP*TP*TP*CP*AP*CP*G)-3', ParB Authors: Schumacher, M.A, Mansoor, A, Funnell, B.E. Deposit date: 2006-11-08 Release date: 2007-02-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Structure of a four-way bridged ParB-DNA complex provides insight into P1 segrosome assembly. J.Biol.Chem., 282, 2007
1RRS	MutY adenine glycosylase in complex with DNA containing an abasic site Descriptor: 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3', CALCIUM ION, ... Authors: Fromme, J.C, Banerjee, A, Huang, S.J, Verdine, G.L. Deposit date: 2003-12-08 Release date: 2004-02-17 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase Nature, 427, 2004
4BXO	Architecture and DNA recognition elements of the Fanconi anemia FANCM- FAAP24 complex Descriptor: 5'-D(*GP*AP*TP*GP*AP*TP*GP*CP*TP*GP*CP)-3', 5'-D(*TP*CP*AP*GP*CP*AP*TP*CP*AP*TP*CP)-3', CALCIUM ION, ... Authors: Coulthard, R, Deans, A, Swuec, P, Bowles, M, Purkiss, A, Costa, A, West, S, McDonald, N. Deposit date: 2013-07-15 Release date: 2013-08-28 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Architecture and DNA Recognition Elements of the Fanconi Anemia Fancm-Faap24 Complex. Structure, 21, 2013
1SA3	An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site Descriptor: 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3', SODIUM ION, Type II restriction enzyme MspI Authors: Xu, Q.S, Kucera, R.B, Roberts, R.J, Guo, H.C. Deposit date: 2004-02-06 Release date: 2004-09-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.95 Å) Cite: An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site. STRUCTURE, 12, 2004
3WI3	Crystal Structure of the Sld3/Treslin domain from yeast Sld3 Descriptor: 1,2-ETHANEDIOL, DNA replication regulator SLD3, SULFATE ION Authors: Itou, H, Araki, H, Shirakihara, Y. Deposit date: 2013-09-05 Release date: 2014-08-20 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of the homology domain of the eukaryotic DNA replication proteins sld3/treslin. Structure, 22, 2014
3R86	Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex grown with 5 mM CoCl2 Descriptor: COBALT (II) ION, DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') Authors: Venkadesh, S, Mandal, P.K, Gautham, N. Deposit date: 2011-03-23 Release date: 2011-04-06 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex To be Published
1NAB	The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes Descriptor: 5'-D(*CP*GP*AP*TP*CP*G)-3', 7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE Authors: Temperini, C, Messori, L, Orioli, P, Di Bugno, C, Animati, F, Ughetto, G. Deposit date: 2002-11-27 Release date: 2003-02-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes Nucleic Acids Res., 31, 2003
1P20	Surprising Roles of Electrostatic Interactions in DNA-Ligand Complexes Descriptor: 5'-D(*CP*GP*AP*TP*CP*G)-3', DOXORUBICIN, THALLIUM (I) ION Authors: Howerton, S.B, Nagpal, A, Williams, L.D. Deposit date: 2003-04-14 Release date: 2003-05-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.34 Å) Cite: Surprising Roles of Electrostatic Interactions in DNA-Ligand Complexes Biopolymers, 69, 2003
6P66	The crystal structure of the XPB complex with Bax1 from Archaeoglobus fulgidus at 3.0 Angstrom resolution Descriptor: CHLORIDE ION, DNA endonuclease Bax1, DNA repair protein RAD25 Authors: DuPrez, K.T, Fan, L, Hilario, E. Deposit date: 2019-06-03 Release date: 2020-06-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of the XPB-Bax1 complex as a dynamic helicase-nuclease machinery for DNA repair. Nucleic Acids Res., 48, 2020
1QTW	HIGH-RESOLUTION CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI DNA REPAIR ENZYME ENDONUCLEASE IV Descriptor: ENDONUCLEASE IV, ZINC ION Authors: Hosfield, D.J, Guan, Y, Haas, B.J, Cunningham, R.P, Tainer, J.A. Deposit date: 1999-06-29 Release date: 1999-08-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.02 Å) Cite: Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis. Cell(Cambridge,Mass.), 98, 1999
1DPU	SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN RPA32 COMPLEXED WITH UNG2(73-88) Descriptor: REPLICATION PROTEIN A (RPA32) C-TERMINAL DOMAIN, URACIL DNA GLYCOSYLASE (UNG2) Authors: Mer, G, Edwards, A.M, Chazin, W.J. Deposit date: 1999-12-27 Release date: 2000-11-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural basis for the recognition of DNA repair proteins UNG2, XPA, and RAD52 by replication factor RPA. Cell(Cambridge,Mass.), 103, 2000
6G01	Complex of neuraminidase from H1N1 influenza virus with tamiphosphor monomethyl ester Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Pachl, P, Pokorna, J. Deposit date: 2018-03-15 Release date: 2019-01-23 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.61 Å) Cite: DNA-linked inhibitor antibody assay (DIANA) as a new method for screening influenza neuraminidase inhibitors. Biochem. J., 475, 2018
3I2O	Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA-T Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(MA7)P*T)-3'), ... Authors: Yu, B, Hunt, J.F. Deposit date: 2009-06-29 Release date: 2009-08-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB. Proc.Natl.Acad.Sci.USA, 106, 2009
3I3M	Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(ME6)P*T)-3'), ... Authors: Yu, B, Hunt, J.F. Deposit date: 2009-06-30 Release date: 2009-08-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB. Proc.Natl.Acad.Sci.USA, 106, 2009
404D	CRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC) Descriptor: 5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3', 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3' Authors: Conn, G, Brown, T, Leonard, G.A. Deposit date: 1998-06-12 Release date: 1998-12-14 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The crystal structure of the RNA/DNA hybrid r(GAAGAGAAGC). d(GCTTCTCTTC) shows significant differences to that found in solution. Nucleic Acids Res., 27, 1999
2VN2	Crystal structure of the N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426 Descriptor: CHROMOSOME REPLICATION INITIATION PROTEIN, MAGNESIUM ION Authors: Huang, C.-Y, Chang, Y.-W, Chen, W.-T, Sun, Y.-J, Hsiao, C.-D. Deposit date: 2008-01-30 Release date: 2008-08-12 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structure of the N-Terminal Domain of Geobacillus Kaustophilus Hta426 Dnad Protein. Biochem.Biophys.Res.Commun., 375, 2008
2JOX	Embryonic Neural Inducing Factor Churchill is not a DNA-Binding Zinc Finger Protein: Solution Structure Reveals a Solvent-Exposed beta-Sheet and Zinc Binuclear Cluster Descriptor: Churchill protein, ZINC ION Authors: Lee, B.M, Buck-Koehntop, B.A, Martinez-Yamout, M.A, Gottesfeld, J.M, Dyson, H, Wright, P.E. Deposit date: 2007-04-07 Release date: 2007-08-21 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Embryonic Neural Inducing Factor Churchill Is not a DNA-binding Zinc Finger Protein: Solution Structure Reveals a Solvent-exposed beta-Sheet and Zinc Binuclear Cluster J.Mol.Biol., 371, 2007
6G02	Complex of neuraminidase from H1N1 influenza virus with tamiphosphor omega-azidohexyl ester Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-[[(3~{R},4~{R},5~{S})-4-acetamido-5-azanyl-3-pentan-3-yloxy-cyclohexen-1-yl]-oxidanyl-phosphoryl]oxyhexylimino-azanylidene-azanium, ... Authors: Pachl, P, Pokorna, J. Deposit date: 2018-03-15 Release date: 2019-01-23 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.84 Å) Cite: DNA-linked inhibitor antibody assay (DIANA) as a new method for screening influenza neuraminidase inhibitors. Biochem. J., 475, 2018
1PQQ	NMR Structure of a Cyclic Polyamide-DNA Complex Descriptor: 45-(3-AMINOPROPYL)-5,11,22,28,34-PENTAMETHYL-3,9,15,20,26,32,38,43-OCTAOXO-2,5,8,14,19,22,25,28,31,34,37,42,45,48-TETRADECAAZA-11-AZONIAHEPTACYCLO[42.2.1.1~4,7~.1~10,13~.1~21,24~.1~27,30~.1~33,36~]DOPENTACONTA-1(46),4(52),6,10(51),12,21(50),23,27(49),29,33(48),35,44(47)-DODECAENE, 5'-D(*CP*GP*CP*TP*AP*AP*CP*AP*GP*GP*C)-3', 5'-D(*GP*CP*CP*TP*GP*TP*TP*AP*GP*CP*G)-3' Authors: Zhang, Q, Dwyer, T.J, Tsui, V, Case, D.A, Cho, J, Dervan, P.B, Wemmer, D.E. Deposit date: 2003-06-18 Release date: 2004-06-29 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR Structure of a Cyclic Polyamide-DNA Complex. J.Am.Chem.Soc., 126, 2004
5ESP	Crystal Structure of LAGLIDADG Meganuclease I-PanMI with coordinated Calcium ions Descriptor: CALCIUM ION, DNA (27-MER), GLYCEROL, ... Authors: Hallinan, J.P, Stoddard, B.L. Deposit date: 2015-11-16 Release date: 2016-03-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.995 Å) Cite: Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity. Structure, 24, 2016
5F9L	CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dAMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N2-ETHENODEOXYGUANOSINE LESION Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(GNE)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2015-12-09 Release date: 2016-12-21 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.592 Å) Cite: Bypass of the 1, N2-Ethenodeoxyguanosine Lesion by Human DNA Polymerase Eta To Be Published
1Q3V	Crystal structure of a wild-type Cre recombinase-loxP synapse: phosphotyrosine covalent intermediate Descriptor: Cre recombinase, IODIDE ION, MAGNESIUM ION, ... Authors: Ennifar, E, Meyer, J.E.W, Buchholz, F, Stewart, A.F, Suck, D. Deposit date: 2003-08-01 Release date: 2003-09-16 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation Nucleic Acids Res., 31, 2003
1Z3F	Structure of ellipticine in complex with a 6-bp DNA Descriptor: 5'-D(*CP*GP*AP*TP*CP*G)-3', COBALT (II) ION, ELLIPTICINE Authors: Canals, A, Purciolas, M, Aymami, J, Coll, M. Deposit date: 2005-03-12 Release date: 2005-07-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The anticancer agent ellipticine unwinds DNA by intercalative binding in an orientation parallel to base pairs. Acta Crystallogr.,Sect.D, 61, 2005
5F9N	CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dCMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N2-ETHENODEOXYGUANOSINE LESION Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(GNE)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2015-12-09 Release date: 2016-12-21 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Bypass of the 1, N2-Ethenodeoxyguanosine Lesion by Human DNA Polymerase Eta To Be Published

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