Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7YU3
DownloadVisualize
BU of 7yu3 by Molmil
Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Akasaka, H, Shihoya, W, Nureki, O.
Deposit date:2022-08-16
Release date:2022-10-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of the active G i -coupled human lysophosphatidic acid receptor 1 complexed with a potent agonist.
Nat Commun, 13, 2022
7YU2
DownloadVisualize
BU of 7yu2 by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase NylC, D122G/H130Y/T267C mutant, hydroxylamine-treated
Descriptor: 6-aminohexanoate-oligomer endohydrolase, GLYCEROL, SULFATE ION
Authors:Negoro, S, Higuchi, Y.
Deposit date:2022-08-16
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:X-ray crystallographic and mutational analysis of the NylC precursor: catalytic mechanism of autocleavage and substrate hydrolysis of nylon hydrolase.
Febs J., 290, 2023
7YU1
DownloadVisualize
BU of 7yu1 by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase NylC precursor, D122G/H130Y/T267C mutant
Descriptor: 6-aminohexanoate-oligomer endohydrolase, GLYCEROL, SODIUM ION, ...
Authors:Negoro, S, Higuchi, Y.
Deposit date:2022-08-16
Release date:2023-03-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:X-ray crystallographic and mutational analysis of the NylC precursor: catalytic mechanism of autocleavage and substrate hydrolysis of nylon hydrolase.
Febs J., 290, 2023
7YU0
DownloadVisualize
BU of 7yu0 by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase NylC precursor, H130Y/N266A/T267A mutant
Descriptor: 6-aminohexanoate-oligomer endohydrolase, GLYCEROL, SODIUM ION, ...
Authors:Negoro, S, Higuchi, Y.
Deposit date:2022-08-16
Release date:2023-03-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:X-ray crystallographic and mutational analysis of the NylC precursor: catalytic mechanism of autocleavage and substrate hydrolysis of nylon hydrolase.
Febs J., 290, 2023
7YTH
DownloadVisualize
BU of 7yth by Molmil
Structure of OCPx1 from Nostoc flagelliforme CCNUN1
Descriptor: Ketosteroid isomerase-related protein
Authors:Yang, Y.W, Liu, K, Chen, S.Z, Chen, M, Qiu, B.S.
Deposit date:2022-08-14
Release date:2023-06-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Functional specialization of expanded orange carotenoid protein paralogs in subaerial Nostoc species.
Plant Physiol., 192, 2023
7YTF
DownloadVisualize
BU of 7ytf by Molmil
Structure of OCPx2 from Nostoc flagelliforme CCNUN1
Descriptor: Ketosteroid isomerase-related protein, beta,beta-carotene-4,4'-dione
Authors:Yang, Y.W, Chen, S.Z, Liu, K, Chen, M, Qiu, B.S.
Deposit date:2022-08-14
Release date:2023-06-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Functional specialization of expanded orange carotenoid protein paralogs in subaerial Nostoc species.
Plant Physiol., 192, 2023
7YTB
DownloadVisualize
BU of 7ytb by Molmil
Crystal structure of Kin4B8
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Kin4B8, RETINAL
Authors:Murakoshi, S, Chazan, A, Shihoya, W, Beja, O, Nureki, O.
Deposit date:2022-08-14
Release date:2023-03-15
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Phototrophy by antenna-containing rhodopsin pumps in aquatic environments.
Nature, 615, 2023
7YTA
DownloadVisualize
BU of 7yta by Molmil
crystal structure of NtAGDP3 AGD1-2 in complex with an H3K9me2 peptide
Descriptor: AGDP3 AGD1-2, H3(1-15)K9me2 peptide
Authors:Zhou, X, Du, J.
Deposit date:2022-08-13
Release date:2022-10-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis.
J Integr Plant Biol, 64, 2022
7YSZ
DownloadVisualize
BU of 7ysz by Molmil
Spiroplasma melliferum FtsZ bound to GDP
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE
Authors:Chakraborty, J, Pananghat, G.
Deposit date:2022-08-13
Release date:2023-08-16
Method:X-RAY DIFFRACTION (2.3000412 Å)
Cite:Structural basis of kinetic polarity of FtsZ from a cell wall less bacterium Spiroplasma
To Be Published
7YSX
DownloadVisualize
BU of 7ysx by Molmil
Crystal structure of PDE4D complexed with licoisoflavone A
Descriptor: 1,2-ETHANEDIOL, 3-[3-(3-methylbut-2-enyl)-2,4-bis(oxidanyl)phenyl]-5,7-bis(oxidanyl)chromen-4-one, MAGNESIUM ION, ...
Authors:Liu, J.Y, Li, M.J, Xu, Y.C.
Deposit date:2022-08-13
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Bioactive compounds from Huashi Baidu decoction possess both antiviral and anti-inflammatory effects against COVID-19.
Proc.Natl.Acad.Sci.USA, 120, 2023
7YSW
DownloadVisualize
BU of 7ysw by Molmil
Cryo-EM Structure of FGF23-FGFR4-aKlotho-HS Quaternary Complex
Descriptor: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid, COPPER (II) ION, Fibroblast growth factor 23, ...
Authors:Mohammadi, M, Chen, L.
Deposit date:2022-08-13
Release date:2023-06-14
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structural basis for FGF hormone signalling.
Nature, 618, 2023
7YSU
DownloadVisualize
BU of 7ysu by Molmil
Cryo-EM Structure of FGF23-FGFR3c-aKlotho-HS Quaternary Complex
Descriptor: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid, COPPER (II) ION, Fibroblast growth factor 23, ...
Authors:Mohammadi, M, Chen, L.
Deposit date:2022-08-13
Release date:2023-04-19
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for FGF hormone signalling.
Nature, 618, 2023
7YSL
DownloadVisualize
BU of 7ysl by Molmil
Crystal structure of D-Cysteine desulfhydrase with a trapped PLP-pyruvate geminal diamine
Descriptor: 1,2-ETHANEDIOL, D-Cysteine desulfhydrase, FORMIC ACID
Authors:Zhang, X, Wang, L, Xu, X, Xing, X, Zhou, J.
Deposit date:2022-08-12
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Characterization and structural basis of D-cysteine desulfhydrase from Pectobacterium atrosepticum
Tetrahedron, 2022
7YSK
DownloadVisualize
BU of 7ysk by Molmil
Crystal structure of D-Cysteine desulfhydrase from Pectobacterium atrosepticum
Descriptor: D-Cysteine desulfhydrase
Authors:Zhang, X, Wang, L, Xu, X, Xing, X, Zhou, J.
Deposit date:2022-08-12
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Characterization and structural basis of D-cysteine desulfhydrase from Pectobacterium atrosepticum
Tetrahedron, 2022
7YSH
DownloadVisualize
BU of 7ysh by Molmil
Cryo-EM Structure of FGF23-FGFR1c-aKlotho-HS Quaternary Complex
Descriptor: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, COPPER (II) ION, Fibroblast growth factor 23, ...
Authors:Mohammadi, M, Chen, L.
Deposit date:2022-08-12
Release date:2023-04-19
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Structural basis for FGF hormone signalling.
Nature, 618, 2023
7YS8
DownloadVisualize
BU of 7ys8 by Molmil
Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) from Mycobacterium tuberculosis
Descriptor: ACETATE ION, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yadav, S, Bhatia, I, Biswal, B.K.
Deposit date:2022-08-11
Release date:2023-08-16
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) from Mycobacterium tuberculosis
To Be Published
7YRZ
DownloadVisualize
BU of 7yrz by Molmil
Crystal structure of HCoV 229E main protease in complex with PF07321332
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase
Authors:Zhou, Y.R, Zeng, P, Zhou, X.L, Lin, C, Zhang, J, Yin, X.S, Li, J.
Deposit date:2022-08-11
Release date:2023-08-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural basis of main proteases of HCoV-229E bound to inhibitor PF-07304814 and PF-07321332.
Biochem.Biophys.Res.Commun., 657, 2023
7YRS
DownloadVisualize
BU of 7yrs by Molmil
Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with MOPS
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, ZINC ION
Authors:Yamamoto, Y, Oiki, S, Takase, R, Mikami, B, Hashimoto, W.
Deposit date:2022-08-10
Release date:2023-08-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.802 Å)
Cite:Crystal Structures of Lacticaseibacillus 4-Deoxy-L- threo- 5-hexosulose-uronate Ketol-isomerase KduI in Complex with Substrate Analogs.
J Appl Glycosci (1999), 70, 2023
7YRQ
DownloadVisualize
BU of 7yrq by Molmil
Cryo-EM structure of human Peroxisomal ABC Transporter ABCD1
Descriptor: ATP-binding cassette sub-family D member 1, [(2~{R})-1-hexadecanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] octadec-9-enoate
Authors:Chao, X, Li-Na, J, Lin, T.
Deposit date:2022-08-10
Release date:2023-03-22
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural insights into substrate recognition and translocation of human peroxisomal ABC transporter ALDP.
Signal Transduct Target Ther, 8, 2023
7YRP
DownloadVisualize
BU of 7yrp by Molmil
Crystal structure of VIM-28 metallo-beta-lactamase
Descriptor: CITRATE ANION, GLYCEROL, Metallo-beta-lactamase VIM-28, ...
Authors:Shimizu-Ibuka, A, Sato, H.
Deposit date:2022-08-10
Release date:2023-06-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of VIM-28 metallo-beta-lactamase
To Be Published
7YRO
DownloadVisualize
BU of 7yro by Molmil
Crystal structure of mango fucosyltransferase 13
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, Fucosyltransferase, ...
Authors:Okada, T, Teramoto, T, Ihara, H, Ikeda, Y, Kakuta, Y.
Deposit date:2022-08-10
Release date:2023-08-16
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Crystal structure of mango alpha 1,3/ alpha 1,4-fucosyltransferase elucidates unique elements that regulate Lewis A-dominant oligosaccharide assembly.
Glycobiology, 34, 2024
7YRK
DownloadVisualize
BU of 7yrk by Molmil
Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex
Descriptor: (6~{S})-6-[(1~{R})-1-oxidanylethyl]-2,4-dioxa-7$l^{4}-aza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(13),7,9,11-tetraen-5-one, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Unno, M, Furuya, T, Kitanishi, K, Akitsu, T.
Deposit date:2022-08-10
Release date:2023-05-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:A novel hybrid protein composed of superoxide-dismutase-active Cu(II) complex and lysozyme.
Sci Rep, 13, 2023
7YRA
DownloadVisualize
BU of 7yra by Molmil
Crystal structure of [2Fe-2S]-TtPetA
Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, ...
Authors:Tsutsumi, E, Niwa, S, Takeda, K.
Deposit date:2022-08-09
Release date:2023-09-20
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride.
Commun Chem, 6, 2023
7YR9
DownloadVisualize
BU of 7yr9 by Molmil
Crystal structure of the immature form of TtPetA
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Tsutsumi, E, Niwa, S, Takeda, K.
Deposit date:2022-08-09
Release date:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride.
Commun Chem, 6, 2023
7YR8
DownloadVisualize
BU of 7yr8 by Molmil
Lloviu cuevavirus nucleoprotein(1-450 residues)-RNA complex
Descriptor: Nucleoprotein, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')
Authors:Hu, S.F, Fujita-Fujiharu, Y, Sugita, Y, Wendt, L, Muramoto, Y, Nakano, M, Hoenen, T, Noda, T.
Deposit date:2022-08-09
Release date:2023-04-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryoelectron microscopic structure of the nucleoprotein-RNA complex of the European filovirus, Lloviu virus.
Pnas Nexus, 2, 2023

223790

数据于2024-08-14公开中

PDB statisticsPDBj update infoContact PDBjnumon