PDB: 97138 resultsInfo pagesStatus searchChemie searchBIRD

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6ZDT	Crystal structure of eukaryotic Fibrillarin with Nop56 N-terminal domain Descriptor: Nucleolar protein 56, rRNA 2'-O-methyltransferase fibrillarin Authors: Hoefler, S, Lukat, P, Carlomagno, T, Blankenfeldt, W. Deposit date: 2020-06-15 Release date: 2021-02-03 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.71 Å) Cite: High-resolution structure of eukaryotic Fibrillarin interacting with Nop56 amino-terminal domain. Rna, 27, 2021
4UJE	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement Descriptor: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S RIBOSOMAL PROTEIN S10, ... Authors: Budkevich, T.V, Giesebrecht, J, Behrmann, E, Loerke, J, Ramrath, D.J.F, Mielke, T, Ismer, J, Hildebrand, P, Tung, C.-S, Nierhaus, K.H, Sanbonmatsu, K.Y, Spahn, C.M.T. Deposit date: 2014-04-05 Release date: 2014-07-16 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (6.9 Å) Cite: Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement. Cell(Cambridge,Mass.), 158, 2014
5DGE	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Melnikov, S, Mailliot, J, Shin, B.-S, Rigger, L, Yusupova, G, Micura, R, Dever, T.E, Yusupov, M. Deposit date: 2015-08-27 Release date: 2017-01-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.45 Å) Cite: Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome To Be Published
5ISK	Endothiapepsin in complex with fluorinated primary amine fragment Descriptor: 2-amino-1-(4-fluorophenyl)ethan-1-one, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Radeva, N, Heine, A, Klebe, G. Deposit date: 2016-03-15 Release date: 2017-03-29 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.14 Å) Cite: Crystallographic Fragment Screening of an Entire Library to be published
5IS4	Endothiapepsin in complex with chiral brominated primary amine fragment Descriptor: (1S)-2-amino-1-(4-bromophenyl)ethan-1-ol, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Radeva, N, Heine, A, Klebe, G. Deposit date: 2016-03-15 Release date: 2017-03-29 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.368 Å) Cite: Crystallographic Fragment Screening of an Entire Library to be published
5ISJ	Endothiapepsin in complex with chiral chlorinated primary amine fragment Descriptor: (1S)-2-amino-1-(4-chlorophenyl)ethan-1-ol, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Radeva, N, Heine, A, Klebe, G. Deposit date: 2016-03-15 Release date: 2017-03-29 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.651 Å) Cite: Crystallographic Fragment Screening of an Entire Library to be published
6GZ3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... Authors: Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V. Deposit date: 2018-07-03 Release date: 2018-12-05 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis. Cell Rep, 25, 2018
4V7H	Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution Descriptor: 18S rRNA, 26S ribosomal RNA, 40S ribosomal protein S0(A), ... Authors: Taylor, D.J, Devkota, B, Huang, A.D, Topf, M, Narayanan, E, Sali, A, Harvey, S.C, Frank, J. Deposit date: 2009-09-22 Release date: 2014-07-09 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (8.9 Å) Cite: Comprehensive molecular structure of the eukaryotic ribosome. Structure, 17, 2009
6CTS	PROPOSED MECHANISM FOR THE CONDENSATION REACTION OF CITRATE SYNTHASE. 1.9-ANGSTROMS STRUCTURE OF THE TERNARY COMPLEX WITH OXALOACETATE AND CARBOXYMETHYL COENZYME A Descriptor: CITRATE SYNTHASE, CITRYL-THIOETHER-COENZYME *A Authors: Karpusas, M, Branchaud, B, Remington, S.J. Deposit date: 1989-11-16 Release date: 1990-10-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Proposed mechanism for the condensation reaction of citrate synthase: 1.9-A structure of the ternary complex with oxaloacetate and carboxymethyl coenzyme A. Biochemistry, 29, 1990
2HRK	Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes Descriptor: CHLORIDE ION, GU4 nucleic-binding protein 1, Glutamyl-tRNA synthetase, ... Authors: Simader, H, Suck, D. Deposit date: 2006-07-20 Release date: 2006-09-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes. Nucleic Acids Res., 34, 2006
2HSN	Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes Descriptor: GU4 nucleic-binding protein 1, Methionyl-tRNA synthetase, cytoplasmic Authors: Simader, H, Koehler, C, Basquin, J, Suck, D. Deposit date: 2006-07-22 Release date: 2006-09-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes. Nucleic Acids Res., 34, 2006
2HSM	Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes Descriptor: GU4 nucleic-binding protein 1, Glutamyl-tRNA synthetase, cytoplasmic Authors: Simader, H, Suck, D. Deposit date: 2006-07-22 Release date: 2006-09-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes. Nucleic Acids Res., 34, 2006
3D2G	Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch Descriptor: MAGNESIUM ION, THIAMINE DIPHOSPHATE, TPP-specific riboswitch Authors: Thore, S. Deposit date: 2008-05-08 Release date: 2008-07-01 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch J.Am.Chem.Soc., 130, 2008
1GNI	HUMAN SERUM ALBUMIN COMPLEXED WITH cis-9-OCTADECENOIC ACID (OLEIC ACID) Descriptor: OLEIC ACID, SERUM ALBUMIN Authors: Petitpas, I, Gruene, T, Bhattacharya, A.A, Curry, S. Deposit date: 2001-10-05 Release date: 2002-01-01 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structures of Human Serum Albumin Complexed with Monounsaturated and Polyunsaturated Fatty Acids. J.Mol.Biol., 314, 2001
1H8U	Crystal Structure of the Eosinophil Major Basic Protein at 1.8A: An Atypical Lectin with a Paradigm Shift in Specificity Descriptor: EOSINOPHIL GRANULE MAJOR BASIC PROTEIN 1, GLYCEROL, SULFATE ION Authors: Swaminathan, G.J, Weaver, A.J, Loegering, D.A, Checkel, J.L, Leonidas, D.D, Gleich, G.J, Acharya, K.R. Deposit date: 2001-02-15 Release date: 2001-07-17 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of the Eosinophil Major Basic Protein at 1.8A. An Atypical Lectin with a Paradigm Shift in Specificity J.Biol.Chem., 276, 2001
6GZ5	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... Authors: Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V. Deposit date: 2018-07-03 Release date: 2018-12-05 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis. Cell Rep, 25, 2018
6GZ4	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... Authors: Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V. Deposit date: 2018-07-03 Release date: 2018-12-05 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis. Cell Rep, 25, 2018
6DFR	CRYSTAL STRUCTURES OF ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE. THE NADP+ HOLOENZYME AND THE FOLATE(DOT)NADP+ TERNARY COMPLEX. SUBSTRATE BINDING AND A MODEL FOR THE TRANSITION STATE Descriptor: CALCIUM ION, DIHYDROFOLATE REDUCTASE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Bystroff, C, Oatley, S.J, Kraut, J. Deposit date: 1988-10-21 Release date: 1990-07-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structures of Escherichia coli dihydrofolate reductase: the NADP+ holoenzyme and the folate.NADP+ ternary complex. Substrate binding and a model for the transition state. Biochemistry, 29, 1990
2J3J	Crystal structure of Arabidopsis thaliana Double Bond Reductase (AT5G16970)-Ternary Complex I Descriptor: 4'-HYDROXYCINNAMIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-dependent oxidoreductase 2-alkenal reductase Authors: Youn, B, Kim, S.J, Moinuddin, S.G, Lee, C, Bedgar, D.L, Harper, A.R, Davin, L.B, Lewis, N.G, Kang, C. Deposit date: 2006-08-21 Release date: 2006-10-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanistic and structural studies of apoform, binary, and ternary complexes of the Arabidopsis alkenal double bond reductase At5g16970. J. Biol. Chem., 281, 2006
2J3I	Crystal structure of Arabidopsis thaliana Double Bond Reductase (AT5G16970)-Binary Complex Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADP-DEPENDENT OXIDOREDUCTASE P1 Authors: Youn, B, Kim, S.J, Moinuddin, S.G, Lee, C, Bedgar, D.L, Harper, A.R, Davin, L.B, Lewis, N.G, Kang, C. Deposit date: 2006-08-21 Release date: 2006-10-05 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanistic and Structural Studies of Apoform, Binary, and Ternary Complexes of the Arabidopsis Alkenal Double Bond Reductase at5G16970. J.Biol.Chem., 281, 2006
3D2V	Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate Descriptor: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-METHYLPYRIDINIUM, MAGNESIUM ION, TPP-specific riboswitch Authors: Thore, S, Frick, C, Ban, N. Deposit date: 2008-05-09 Release date: 2008-07-01 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch J.Am.Chem.Soc., 130, 2008
2J3K	Crystal structure of Arabidopsis thaliana Double Bond Reductase (AT5G16970)-Ternary Complex II Descriptor: (2E,4R)-4-HYDROXYNON-2-ENAL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-dependent oxidoreductase 2-alkenal reductase Authors: Youn, B, Kim, S.J, Moinuddin, S.G, Lee, C, Bedgar, D.L, Harper, A.R, Davin, L.B, Lewis, N.G, Kang, C. Deposit date: 2006-08-22 Release date: 2006-10-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanistic and structural studies of apoform, binary, and ternary complexes of the Arabidopsis alkenal double bond reductase At5g16970. J. Biol. Chem., 281, 2006
4CXH	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement Descriptor: 18S RRNA - H44, 18S RRNA - H5-H14, 18S RRNA - H8, ... Authors: Budkevich, T.V, Giesebrecht, J, Behrmann, E, Loerke, J, Ramrath, D.J.F, Mielke, T, Ismer, J, Hildebrand, P, Tung, C.-S, Nierhaus, K.H, Sanbonmatsu, K.Y, Spahn, C.M.T. Deposit date: 2014-04-07 Release date: 2014-07-16 Last modified: 2019-06-26 Method: ELECTRON MICROSCOPY (8.9 Å) Cite: Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement. Cell(Cambridge,Mass.), 158, 2014
4CXG	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement Descriptor: 18S RRNA - H44, 18S RRNA - H5-H14, 18S RRNA - H8, ... Authors: Budkevich, T.V, Giesebrecht, J, Behrmann, E, Loerke, J, Ramrath, D.J.F, Mielke, T, Ismer, J, Hildebrand, P, Tung, C.-S, Nierhaus, K.H, Sanbonmatsu, K.Y, Spahn, C.M.T. Deposit date: 2014-04-07 Release date: 2014-07-16 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (8.7 Å) Cite: Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement. Cell(Cambridge,Mass.), 158, 2014
4R0D	Crystal structure of a eukaryotic group II intron lariat Descriptor: GROUP IIB INTRON LARIAT, IRIDIUM HEXAMMINE ION, LIGATED EXONS, ... Authors: Robart, A.R, Chan, R.T, Peters, J.K, Rajashankar, K.R, Toor, N. Deposit date: 2014-07-30 Release date: 2014-10-01 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.676 Å) Cite: Crystal structure of a eukaryotic group II intron lariat. Nature, 514, 2014

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