Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8H0Z
DownloadVisualize
BU of 8h0z by Molmil
Structure of SARS-CoV-1 Spike Protein with Engineered x1 Disulfide (S370C and D967C), Locked-122 Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BILIVERDINE IX ALPHA, ...
Authors:Zhang, X, Li, Z, Liu, Y, Wang, J, Fu, L, Wang, P, He, J, Xiong, X.
Deposit date:2022-09-30
Release date:2022-11-09
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes.
Life Sci Alliance, 6, 2023
8H0Y
DownloadVisualize
BU of 8h0y by Molmil
Structure of SARS-CoV-1 Spike Protein with Engineered x1 Disulfide (S370C and D967C), Locked-112 Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BILIVERDINE IX ALPHA, LINOLEIC ACID, ...
Authors:Zhang, X, Li, Z, Liu, Y, Wang, J, Fu, L, Wang, P, He, J, Xiong, X.
Deposit date:2022-09-30
Release date:2022-11-09
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes.
Life Sci Alliance, 6, 2023
8H12
DownloadVisualize
BU of 8h12 by Molmil
Structure of SARS-CoV-1 Spike Protein with Engineered x2 Disulfide (G400C and V969C), Locked-2 Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhang, X, Li, Z, Liu, Y, Wang, J, Fu, L, Wang, P, He, J, Xiong, X.
Deposit date:2022-09-30
Release date:2022-11-09
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (3.44681 Å)
Cite:Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes.
Life Sci Alliance, 6, 2023
8H15
DownloadVisualize
BU of 8h15 by Molmil
Structure of SARS-CoV-1 Spike Protein (S/native) at pH 5.5, Closed Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhang, X, Li, Z, Liu, Y, Wang, J, Fu, L, Wang, P, He, J, Xiong, X.
Deposit date:2022-09-30
Release date:2022-11-09
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (3.14182 Å)
Cite:Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes.
Life Sci Alliance, 6, 2023
8H0X
DownloadVisualize
BU of 8h0x by Molmil
Structure of SARS-CoV-1 Spike Protein with Engineered x1 Disulfide (S370C and D967C), Locked-1 Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BILIVERDINE IX ALPHA, LINOLEIC ACID, ...
Authors:Zhang, X, Li, Z, Liu, Y, Wang, J, Fu, L, Wang, P, He, J, Xiong, X.
Deposit date:2022-09-30
Release date:2022-11-09
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes.
Life Sci Alliance, 6, 2023
6P6W
DownloadVisualize
BU of 6p6w by Molmil
Cryo-EM structure of voltage-gated sodium channel NavAb N49K/L109A/M116V/G94C/Q150C disulfide crosslinked mutant in the resting state
Descriptor: Fusion of Maltose-binding protein and voltage-gated sodium channel NavAb
Authors:Wisedchaisri, G, Tonggu, L, McCord, E, Gamal El-Din, T.M, Wang, L, Zheng, N, Catterall, W.A.
Deposit date:2019-06-04
Release date:2019-08-14
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Resting-State Structure and Gating Mechanism of a Voltage-Gated Sodium Channel.
Cell, 178, 2019
7NDG
DownloadVisualize
BU of 7ndg by Molmil
Cryo-EM structure of the ternary complex between Netrin-1, Neogenin and Repulsive Guidance Molecule B
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neogenin, ...
Authors:Robinson, R.A, Griffiths, S.C, van de Haar, L.L, Malinauskas, T, van Battum, E.Y, Zelina, P, Schwab, R.A, Karia, D, Malinauskaite, L, Brignani, S, van den Munkhof, M, Dudukcu, O, De Ruiter, A.A, Van den Heuvel, D.M.A, Bishop, B, Elegheert, J, Aricescu, A.R, Pasterkamp, R.J, Siebold, C.
Deposit date:2021-02-01
Release date:2021-03-31
Last modified:2021-04-28
Method:ELECTRON MICROSCOPY (5.98 Å)
Cite:Simultaneous binding of Guidance Cues NET1 and RGM blocks extracellular NEO1 signaling.
Cell, 184, 2021
7W8J
DownloadVisualize
BU of 7w8j by Molmil
Dimethylformamidase, 2x(A2B2)
Descriptor: FE (III) ION, N,N-dimethylformamidase large subunit, N,N-dimethylformamidase small subunit
Authors:Vinothkumar, K.R, Subramanian, R, Arya, C, Ramanathan, G.
Deposit date:2021-12-07
Release date:2022-04-06
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Dimethylformamidase with a Unique Iron Center
To Be Published
7ZBU
DownloadVisualize
BU of 7zbu by Molmil
CryoEM structure of SARS-CoV-2 spike monomer in complex with neutralising antibody P008_60
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, P008_60 antibody, ...
Authors:Rosa, A, Pye, V.E, Cronin, N, Cherepanov, P.
Deposit date:2022-03-24
Release date:2022-08-17
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (4.31 Å)
Cite:A neutralizing epitope on the SD1 domain of SARS-CoV-2 spike targeted following infection and vaccination.
Cell Rep, 40, 2022
5VY5
DownloadVisualize
BU of 5vy5 by Molmil
Rabbit muscle aldolase using 200keV
Descriptor: Fructose-bisphosphate aldolase A
Authors:Herzik Jr, M.A, Wu, M, Lander, G.C.
Deposit date:2017-05-24
Release date:2017-06-14
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Achieving better-than-3- angstrom resolution by single-particle cryo-EM at 200 keV.
Nat. Methods, 14, 2017
5VY4
DownloadVisualize
BU of 5vy4 by Molmil
Thermoplasma acidophilum 20S Proteasome using 200keV with image shift
Descriptor: Proteasome subunit alpha, Proteasome subunit beta
Authors:Herzik Jr, M.A, Wu, M, Lander, G.C.
Deposit date:2017-05-24
Release date:2017-06-14
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Achieving better-than-3- angstrom resolution by single-particle cryo-EM at 200 keV.
Nat. Methods, 14, 2017
7ZF2
DownloadVisualize
BU of 7zf2 by Molmil
Protomeric substructure from an octameric assembly of M. tuberculosis RNA polymerase in complex with sigma-b initiation factor
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Trapani, S, Bron, P, Lai Kee Him, J, Brodolin, K, Morichaud, Z, Vishwakarma, R.
Deposit date:2022-03-31
Release date:2023-02-08
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:Structural basis of the mycobacterial stress-response RNA polymerase auto-inhibition via oligomerization.
Nat Commun, 14, 2023
7TQU
DownloadVisualize
BU of 7tqu by Molmil
Coxsackievirus A21 capsid subdomain in complex with mouse polyclonal antibody pAbC-1
Descriptor: MYRISTIC ACID, VP1, VP2, ...
Authors:Antanasijevic, A, Ward, A.B.
Deposit date:2022-01-27
Release date:2023-01-04
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:High-resolution structural analysis of enterovirus-reactive polyclonal antibodies in complex with whole virions.
Pnas Nexus, 1, 2022
7AD1
DownloadVisualize
BU of 7ad1 by Molmil
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Envelope glycoprotein,Spike glycoprotein,Envelope glycoprotein,SARS-CoV-2 S protein
Authors:Rutten, L, Renault, L.L.R, Juraszek, J, Langedijk, J.P.M.
Deposit date:2020-09-14
Release date:2020-11-04
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Stabilizing the closed SARS-CoV-2 spike trimer.
Nat Commun, 12, 2021
6W6M
DownloadVisualize
BU of 6w6m by Molmil
Single particle cryoEM structure of V. cholerae Type IV competence pilus secretin PilQ
Descriptor: Type IV pilus secretin PilQ family protein
Authors:Sazinsky, M.H, Weaver, S.J.
Deposit date:2020-03-17
Release date:2020-10-14
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:CryoEM structure of the type IVa pilus secretin required for natural competence in Vibrio cholerae.
Nat Commun, 11, 2020
6WKT
DownloadVisualize
BU of 6wkt by Molmil
Cu(I)-bound Copper Storage Protein BsCsp3
Descriptor: Csp3
Authors:Chen, J.Z, Oken, A, Dennison, C, Lee, J, David, S.
Deposit date:2020-04-16
Release date:2021-04-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cu(I)-bound Copper Storage Protein BsCsp3
To Be Published
5NL2
DownloadVisualize
BU of 5nl2 by Molmil
cryo-EM structure of the mTMEM16A ion channel at 6.6 A resolution.
Descriptor: Anoctamin-1
Authors:Paulino, C, Neldner, Y, Lam, K.M, Kalienkova, V, Brunner, J.D, Schenck, S, Dutzler, R.
Deposit date:2017-04-03
Release date:2017-06-07
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structural basis for anion conduction in the calcium-activated chloride channel TMEM16A.
Elife, 6, 2017
7PTU
DownloadVisualize
BU of 7ptu by Molmil
Structure of pentameric S-layer protein from Halofaerax volcanii
Descriptor: Cell surface glycoprotein, beta-D-glucopyranose
Authors:von Kuegelgen, A, Bharat, T.A.M.
Deposit date:2021-09-27
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Complete atomic structure of a native archaeal cell surface.
Cell Rep, 37, 2021
7PTR
DownloadVisualize
BU of 7ptr by Molmil
Structure of hexameric S-layer protein from Haloferax volcanii archaea
Descriptor: CALCIUM ION, Cell surface glycoprotein, beta-D-glucopyranose
Authors:von Kuegelgen, A, Bharat, T.A.M.
Deposit date:2021-09-27
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Complete atomic structure of a native archaeal cell surface.
Cell Rep, 37, 2021
8C8K
DownloadVisualize
BU of 8c8k by Molmil
In vitro structure of the Nitrosopumilus maritimus S-layer - Six-fold symmetry (C6)
Descriptor: Cell surface protein
Authors:von Kuegelgen, A, Bharat, T.
Deposit date:2023-01-20
Release date:2024-04-10
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Membraneless channels sieve cations in ammonia-oxidizing marine archaea.
Nature, 630, 2024
8C8M
DownloadVisualize
BU of 8c8m by Molmil
In vitro structure of the Nitrosopumilus maritimus S-layer - Composite map between two and six-fold symmetrised
Descriptor: Cell surface protein
Authors:von Kuegelgen, A, Bharat, T.
Deposit date:2023-01-20
Release date:2024-04-10
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Membraneless channels sieve cations in ammonia-oxidizing marine archaea.
Nature, 630, 2024
8C8L
DownloadVisualize
BU of 8c8l by Molmil
In vitro structure of the Nitrosopumilus maritimus S-layer - Two-fold symmetry (C2)
Descriptor: Cell surface protein
Authors:von Kuegelgen, A, Bharat, T.
Deposit date:2023-01-20
Release date:2024-04-10
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Membraneless channels sieve cations in ammonia-oxidizing marine archaea.
Nature, 630, 2024
5U1C
DownloadVisualize
BU of 5u1c by Molmil
Structure of tetrameric HIV-1 Strand Transfer Complex Intasome
Descriptor: DNA (11-MER), DNA (23-MER), DNA (37-MER), ...
Authors:Lyumkis, D, Passos, D.
Deposit date:2016-11-28
Release date:2017-01-11
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome.
Science, 355, 2017
5T62
DownloadVisualize
BU of 5t62 by Molmil
Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
Descriptor: 25S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ...
Authors:Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W.
Deposit date:2016-09-01
Release date:2017-02-08
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis.
EMBO J., 36, 2017
6NE3
DownloadVisualize
BU of 6ne3 by Molmil
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h bound at SHL-2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (156-MER), Histone H2A type 1, ...
Authors:Armache, J.-P, Gamarra, N, Johnson, S.L, Leonard, J.D, Wu, S, Narlikar, G.N, Cheng, Y.
Deposit date:2018-12-16
Release date:2019-07-17
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome.
Elife, 8, 2019

222624

数据于2024-07-17公开中

PDB statisticsPDBj update infoContact PDBjnumon