PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

---

1N35	lambda3 elongation complex with four phosphodiester bond formed Descriptor: 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE, 5'-R(*AP*UP*UP*AP*GP*CP*CP*CP*CP*C)-3', 5'-R(P*GP*GP*GP*GP*G)-3', ... Authors: Tao, Y, Farsetta, D.L, Nibert, M.L, Harrison, S.C. Deposit date: 2002-10-25 Release date: 2002-12-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3 Cell(Cambridge,Mass.), 111, 2002
4RVZ	Crystal structure of tRNA fluorescent labeling enzyme Descriptor: MAGNESIUM ION, N-(4-aminobutyl)-2-azidoacetamide, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ... Authors: Dong, J, Li, F, Wang, J, Gong, W. Deposit date: 2014-11-29 Release date: 2015-03-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.9 Å) Cite: A covalent approach for site-specific RNA labeling in Mammalian cells. Angew.Chem.Int.Ed.Engl., 54, 2015
2FFL	Crystal Structure of Dicer from Giardia intestinalis Descriptor: Dicer, MANGANESE (II) ION Authors: Doudna, J.A, MacRae, I.J, Adams, P.D. Deposit date: 2005-12-19 Release date: 2006-01-24 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.33 Å) Cite: Structural Basis of Double-Stranded RNA Processing by Dicer Science, 311, 2006
7OW0	1.55 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex with overhangs solved by Zn-SAD. Descriptor: DNA (5'-D(*TP*CP*TP*CP*CP*TP*AP*GP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), ZINC ION Authors: Dolot, R.M, Maciaszek, A, Nawrot, B.C. Deposit date: 2021-06-15 Release date: 2021-07-14 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.55 Å) Cite: First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes Crystals, 2022
8EOE	Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_LG) Descriptor: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Vishwakarm, R.K, Murakami, K.S. Deposit date: 2022-10-03 Release date: 2023-02-01 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA, 120, 2023
8EOF	Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_PG) Descriptor: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Vishwakarm, R.K, Murakami, K.S. Deposit date: 2022-10-03 Release date: 2023-02-01 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA, 120, 2023
7U5E	I-F3b Cascade-TniQ partial R-loop complex Descriptor: Cas6, Cas7, Cas8/5, ... Authors: Park, J.U, Mehrotra, E, Kellogg, E.H. Deposit date: 2022-03-02 Release date: 2023-06-14 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.03 Å) Cite: Multiple adaptations underly co-option of a CRISPR surveillance complex for RNA-guided DNA transposition. Mol.Cell, 83, 2023
7U5D	I-F3b Cascade-TniQ full R-loop complex Descriptor: Cas6, Cas7, Cas8/5, ... Authors: Park, J.U, Mehrotra, E, Kellogg, E.H. Deposit date: 2022-03-02 Release date: 2023-06-21 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.52 Å) Cite: Multiple adaptations underly co-option of a CRISPR surveillance complex for RNA-guided DNA transposition. Mol.Cell, 83, 2023
8GWK	SARS-CoV-2 RNA E-RTC complex with RMP-nsp9 and GMPPNP Descriptor: Helicase, MAGNESIUM ION, Non-structural protein 7, ... Authors: Yan, L.M, Huang, Y.C, Ge, J, Liu, Z.Y, Gao, Y, Rao, Z.H, Lou, Z.Y. Deposit date: 2022-09-17 Release date: 2024-02-28 Method: ELECTRON MICROSCOPY (2.72 Å) Cite: A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analog inhibitors. Cell, 185, 2022
6R7B	Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 Descriptor: CRISPR-associated (Cas) DxTHG family, RNA (5'-R(P*AP*AP*AP*A)-3') Authors: Molina, R, Montoya, G, Sofos, N, Stella, S. Deposit date: 2019-03-28 Release date: 2019-10-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.12 Å) Cite: Structure of Csx1-cOA4complex reveals the basis of RNA decay in Type III-B CRISPR-Cas. Nat Commun, 10, 2019
2IW3	Elongation Factor 3 in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ELONGATION FACTOR 3A, SULFATE ION Authors: Andersen, C.B.F, Becker, T, Blau, M, Anand, M, Halic, M, Balar, B, Mielke, T, Boesen, T, Pedersen, J.S, Spahn, C.M.T, Kinzy, T.G, Andersen, G.R, Beckmann, R. Deposit date: 2006-06-26 Release date: 2006-08-17 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure of Eef3 and the Mechanism of Transfer RNA Release from the E-Site. Nature, 443, 2006
7ASV	Crystal structure of tWHD2 of Rpc5 subunit of human RNA Polymerase III Descriptor: ACETATE ION, DNA-directed RNA polymerase III subunit RPC5 Authors: Vannini, A, Abascal-Palacios, G, Ramsay, E.P. Deposit date: 2020-10-28 Release date: 2020-12-30 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structure of human RNA polymerase III. Nat Commun, 11, 2020
7ASU	Crystal structure of tWHD1 of Rpc5 subunit of human RNA Polymerase III Descriptor: DNA-directed RNA polymerase III subunit RPC5, ZINC ION Authors: Vannini, A, Abascal-Palacios, G, Ramsay, E.P. Deposit date: 2020-10-28 Release date: 2020-12-30 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Structure of human RNA polymerase III. Nat Commun, 11, 2020
1B2Z	DELETION OF A BURIED SALT BRIDGE IN BARNASE Descriptor: PROTEIN (BARNASE), ZINC ION Authors: Vaughan, C.K, Harryson, P, Buckle, A.M, Oliveberg, M, Fersht, A.R. Deposit date: 1998-12-03 Release date: 1998-12-09 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.03 Å) Cite: A structural double-mutant cycle: estimating the strength of a buried salt bridge in barnase. Acta Crystallogr.,Sect.D, 58, 2002
7B7U	Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2 Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Fianu, I, Dienemann, C, Aibara, S, Schilbach, S, Cramer, P. Deposit date: 2020-12-11 Release date: 2021-05-19 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Commun Biol, 4, 2021
2C06	NMR-based model of the complex of the toxin Kid and a 5-nucleotide substrate RNA fragment (AUACA) Descriptor: 5'-R(*AP*UP*AP*CP*AP)-3', KID TOXIN PROTEIN Authors: Kamphuis, M.B, Bonvin, A.M.J.J, Monti, M.C, Lemonnier, M, Munoz-Gomez, A, Van Den Heuvel, R.H.H, Diaz-Orejas, R, Boelens, R. Deposit date: 2005-08-25 Release date: 2006-02-08 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Model for RNA Binding and the Catalytic Site of the Rnase Kid of the Bacterial Pard Toxin-Antitoxin System. J.Mol.Biol., 357, 2006
7PZP	Mitochondrial DNA dependent RNA polymerase homodimer. Descriptor: DNA-directed RNA polymerase, mitochondrial Authors: Das, H, Hallberg, B.M. Deposit date: 2021-10-13 Release date: 2022-09-28 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization. Cell, 185, 2022
6N6D	Vibrio cholerae Oligoribonuclease bound to pAG Descriptor: Oligoribonuclease, RNA (5'-R(P*AP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.534 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6K	Human REXO2 bound to pAG Descriptor: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.418 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
1B20	DELETION OF A BURIED SALT-BRIDGE IN BARNASE Descriptor: PROTEIN (BARNASE), ZINC ION Authors: Vaughan, C.K, Harryson, P, Buckle, A.M, Oliveberg, M, Fersht, A.R. Deposit date: 1998-12-03 Release date: 1998-12-09 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A structural double-mutant cycle: estimating the strength of a buried salt bridge in barnase. Acta Crystallogr.,Sect.D, 58, 2002
6R9R	Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 Descriptor: CRISPR-associated (Cas) DxTHG family, circular RNA (5'-R(P*AP*AP*AP*A)-3') Authors: Molina, R, Montoya, G, Sofos, N, Stella, S. Deposit date: 2019-04-03 Release date: 2019-10-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of Csx1-cOA4complex reveals the basis of RNA decay in Type III-B CRISPR-Cas. Nat Commun, 10, 2019
6N6F	Vibrio cholerae Oligoribonuclease bound to pGC Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*C)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.735 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6J	Human REXO2 bound to pAA Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.317 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6H	Vibrio cholerae Oligoribonuclease bound to pCpU Descriptor: Oligoribonuclease, RNA (5'-R(P*CP*U)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.757 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6I	Human REXO2 bound to pGG Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.431 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019

<274275276277278279280281282283284285286287288289>