PDB: 11109 resultsInfo pagesStatus searchChemie searchBIRD

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5EH1	Crystal structure of the extracellular part of receptor 2 of human interferon gamma Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, GLYCEROL, ... Authors: Kolenko, P, Mikulecky, P, Zahradnik, J, Dohnalek, J, Koval, T, Cerny, J, Necasova, I, Schneider, B. Deposit date: 2015-10-27 Release date: 2016-08-17 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of human interferon-gamma receptor 2 reveals the structural basis for receptor specificity. Acta Crystallogr D Struct Biol, 72, 2016
4DW4	Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 5'-UMP Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, E(rns) glycoprotein, ... Authors: Krey, T, Bontems, F, Vonrhein, C, Vaney, M.-C, Bricogne, G, Ruemenapf, T, Rey, F.A. Deposit date: 2012-02-24 Release date: 2012-05-23 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Crystal Structure of the Pestivirus Envelope Glycoprotein E(rns) and Mechanistic Analysis of Its Ribonuclease Activity. Structure, 20, 2012
4DWC	Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with Zn ions Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Krey, T, Bontems, F, Vonrhein, C, Vaney, M.-C, Bricogne, G, Ruemenapf, T, Rey, F.A. Deposit date: 2012-02-24 Release date: 2012-05-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.89 Å) Cite: Crystal Structure of the Pestivirus Envelope Glycoprotein E(rns) and Mechanistic Analysis of Its Ribonuclease Activity. Structure, 20, 2012
4D8P	Structural and functional studies of the trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) molecule Descriptor: GLYCEROL, HLA-DQA1 protein, Peptide from Gamma-gliadin,HLA class II histocompatibility antigen, ... Authors: Kim, C.-Y, Hotta, K, Mathews, I.I, Chen, X. Deposit date: 2012-01-11 Release date: 2012-03-14 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Structural and functional studies of trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) protein molecule J.Biol.Chem., 287, 2012
3FSC	Crystal structure of QdtC, the dTDP-3-amino-3,6-dideoxy-D-glucose N-acetyl transferase from Thermoanaerobacterium thermosaccharolyticum in complex with CoA and dTDP-3-amino-fucose Descriptor: (3R,4S,5R,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate, COENZYME A, QdtC Authors: Holden, H.M, Thoden, J.B. Deposit date: 2009-01-09 Release date: 2009-02-17 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural and Functional Studies of QdtC: an N-Acetyltransferase Required for the Biosynthesis of dTDP-3-Acetamido-3,6-Dideoxy-alpha-D-Glucose. Biochemistry, 48, 2009
5F5B	Structure of E.Coli GlpG complexed with peptidic inhibitor Ac-VRMA-CHO Descriptor: Rhomboid protease GlpG, peptidic derivative of Gurken: ACE-VAL-ARG-MET-ALA-aldehyde Authors: Urban, S, Cho, S, Dickey, S.W. Deposit date: 2015-12-04 Release date: 2016-02-17 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures and Inhibition Kinetics Reveal a Two-Stage Catalytic Mechanism with Drug Design Implications for Rhomboid Proteolysis. Mol.Cell, 61, 2016
5F5G	Structure of E.Coli GlpG Y205F mutant complexed with peptidic inhibitor Ac-RMA-CHO in the DMPC/CHAPSO bicelle Descriptor: ACE-ARG-MET-ALA-aldehyde, Rhomboid protease GlpG Authors: Urban, S, Cho, S, Dickey, S.W. Deposit date: 2015-12-04 Release date: 2016-04-06 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures and Inhibition Kinetics Reveal a Two-Stage Catalytic Mechanism with Drug Design Implications for Rhomboid Proteolysis. Mol.Cell, 61, 2016
5XPC	Crystal Structure of Drep4 CIDE domain Descriptor: DNAation factor-related protein 4, GLYCEROL Authors: Park, H.H, Jeong, J.H. Deposit date: 2017-06-01 Release date: 2017-07-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.902 Å) Cite: CIDE domains form functionally important higher-order assemblies for DNA fragmentation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GKN	Catalase structure determined by electron crystallography of thin 3D crystals Descriptor: Catalase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE Authors: Yonekura, K. Deposit date: 2016-07-04 Release date: 2016-10-26 Last modified: 2023-11-08 Method: ELECTRON CRYSTALLOGRAPHY (3.2 Å) Cite: Refinement of Cryo-EM Structures Using Scattering Factors of Charged Atoms J.Appl.Crystallogr., 49, 2016
2OOT	A High Resolution Structure of Ligand-free Human Glutamate Carboxypeptidase II Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Barinka, C, Lubkowski, J. Deposit date: 2007-01-26 Release date: 2007-03-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.64 Å) Cite: A high-resolution structure of ligand-free human glutamate carboxypeptidase II. Acta Crystallogr.,Sect.F, 63, 2007
4FXC	TERTIARY STRUCTURE OF [2FE-2S] FERREDOXIN FROM SPIRULINA PLATENSIS REFINED AT 2.5 ANGSTROMS RESOLUTION: STRUCTURAL COMPARISONS OF PLANT-TYPE FERREDOXINS AND AN ELECTROSTATIC POTENTIAL ANALYSIS Descriptor: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN Authors: Fukuyama, K, Tsukihara, T. Deposit date: 1995-04-25 Release date: 1995-12-07 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Tertiary structure of [2Fe-2S] ferredoxin from Spirulina platensis refined at 2.5 A resolution: structural comparisons of plant-type ferredoxins and an electrostatic potential analysis. J.Biochem.(Tokyo), 117, 1995
2OR4	A high resolution crystal structure of human glutamate carboxypeptidase II in complex with quisqualic acid Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Barinka, C, Lubkowski, J. Deposit date: 2007-02-01 Release date: 2007-06-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.62 Å) Cite: Structural insight into the pharmacophore pocket of human glutamate carboxypeptidase II. J.Med.Chem., 50, 2007
4BV4	Structure and allostery in Toll-Spatzle recognition Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEIN SPAETZLE C-106, PROTEIN TOLL, ... Authors: Lewis, M.F, Arnot, C.J, Beeston, H, McCoy, A, Ashcroft, A.E, Gay, N.J, Gangloff, M. Deposit date: 2013-06-24 Release date: 2013-12-04 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Cytokine Spatzle Binds to the Drosophila Immunoreceptor Toll with a Neurotrophin-Like Specificity and Couples Receptor Activation. Proc.Natl.Acad.Sci.USA, 110, 2013
2PVW	A high resolution structure of human glutamate carboxypeptidase II (GCPII) in complex with 2-(phosphonomethyl)pentanedioic acid (2-PMPA) Descriptor: (2S)-2-(PHOSPHONOMETHYL)PENTANEDIOIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Barinka, C, Lubkowski, J. Deposit date: 2007-05-10 Release date: 2007-05-22 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.71 Å) Cite: Structural insight into the pharmacophore pocket of human glutamate carboxypeptidase II. J.Med.Chem., 50, 2007
1JD5	Crystal Structure of DIAP1-BIR2/GRIM Descriptor: APOPTOSIS 1 INHIBITOR, ZINC ION, cell death protein GRIM Authors: Wu, J.W, Cocina, A.E, Chai, J, Hay, B.A, Shi, Y. Deposit date: 2001-06-12 Release date: 2001-12-05 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural analysis of a functional DIAP1 fragment bound to grim and hid peptides. Mol.Cell, 8, 2001
4YVK	Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36C) Descriptor: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase Authors: Yoshida, K, Ito, T, Yokoyama, S. Deposit date: 2015-03-20 Release date: 2015-07-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.002 Å) Cite: Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD. Proc.Natl.Acad.Sci.USA, 112, 2015
3G7T	Crystal structure of dengue virus type 1 envelope protein in the postfusion conformation Descriptor: CHLORIDE ION, Envelope protein Authors: Modis, Y. Deposit date: 2009-02-10 Release date: 2009-04-21 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Crystal structure of dengue virus type 1 envelope protein in the postfusion conformation and its implications for membrane fusion. J.Virol., 83, 2009
5EO9	Crystal Structure of the complex of Dpr6 Domain 1 bound to DIP-alpha Domain 1+2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CG32791, isoform A, ... Authors: Ozkan, E, Zinn, K, Garcia, K.C. Deposit date: 2015-11-10 Release date: 2016-01-06 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.2988 Å) Cite: Control of Synaptic Connectivity by a Network of Drosophila IgSF Cell Surface Proteins. Cell, 163, 2015
4ISN	Crystal Structure of Matriptase in complex with its inhibitor HAI-1 Descriptor: GLUTATHIONE, Kunitz-type protease inhibitor 1, Suppressor of tumorigenicity 14 protein, ... Authors: Huang, M.D, Zhao, B.Y, Yuan, C, Li, R. Deposit date: 2013-01-16 Release date: 2013-03-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structures of matriptase in complex with its inhibitor hepatocyte growth factor activator inhibitor-1. J.Biol.Chem., 288, 2013
5EHS	Crystal structure of the Drosophila CG3822 KaiR1D ligand binding domain complex with D-AP5 Descriptor: 5-phosphono-D-norvaline, 5-phosphono-L-norvaline, RE06730p,GH17276 Authors: Dharkar, P, Mayer, M.L. Deposit date: 2015-10-28 Release date: 2016-11-09 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.749 Å) Cite: Novel Functional Properties of Drosophila CNS Glutamate Receptors. Neuron, 92, 2016
5E4K	Structure of ligand binding region of uPARAP at pH 7.4 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, C-type mannose receptor 2, ... Authors: Yuan, C, Huang, M. Deposit date: 2015-10-06 Release date: 2016-08-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.58 Å) Cite: Crystal structures of the ligand-binding region of uPARAP: effect of calcium ion binding Biochem.J., 473, 2016
4DVK	Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 strain NCP-7 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, E(rns) glycoprotein, ... Authors: Krey, T, Bontems, F, Vonrhein, C, Vaney, M.-C, Bricogne, G, Ruemenapf, T, Rey, F.A. Deposit date: 2012-02-23 Release date: 2012-05-23 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Crystal Structure of the Pestivirus Envelope Glycoprotein E(rns) and Mechanistic Analysis of Its Ribonuclease Activity. Structure, 20, 2012
2OUH	Crystal structure of the Thrombospondin-1 N-terminal domain in complex with fractionated Heparin DP10 Descriptor: SULFATE ION, Thrombospondin-1 Authors: Tan, K, Joachimiak, A, Wang, J, Lawler, J. Deposit date: 2007-02-11 Release date: 2008-01-08 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Heparin-induced cis- and trans-Dimerization Modes of the Thrombospondin-1 N-terminal Domain. J.Biol.Chem., 283, 2008
4ZN8	Using molecular dynamics simulations to predict domain swapping of computationally designed protein variants Descriptor: POTASSIUM ION, computationally modified engrailed homeodomain Authors: Huang, P.-S, Thomas, L.M, Mayo, S.L. Deposit date: 2015-05-04 Release date: 2015-05-27 Last modified: 2019-11-27 Method: X-RAY DIFFRACTION (3 Å) Cite: Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants. J.Mol.Biol., 427, 2015
4DW3	Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 5'-CMP Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CYTIDINE-5'-MONOPHOSPHATE, ... Authors: Krey, T, Bontems, F, Vonrhein, C, Vaney, M.-C, Bricogne, G, Ruemenapf, T, Rey, F.A. Deposit date: 2012-02-24 Release date: 2012-05-23 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal Structure of the Pestivirus Envelope Glycoprotein E(rns) and Mechanistic Analysis of Its Ribonuclease Activity. Structure, 20, 2012

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