Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6QRD
DownloadVisualize
BU of 6qrd by Molmil
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with inhibitor
Descriptor: 5-azanyl-3-[1-[[4-[(4-propan-2-ylpiperazin-1-yl)methyl]phenyl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile, SULFATE ION, tRNA (guanine-N(1)-)-methyltransferase
Authors:Thomas, S.E, Whitehouse, A.J, Coyne, A.G, Abell, C, Mendes, V, Blundell, T.L.
Deposit date:2019-02-19
Release date:2019-09-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Development of Inhibitors againstMycobacterium abscessustRNA (m1G37) Methyltransferase (TrmD) Using Fragment-Based Approaches.
J.Med.Chem., 62, 2019
6TW2
DownloadVisualize
BU of 6tw2 by Molmil
Re-refined crystal structure of di-phosphorylated human CLK1 in complex with a novel substituted indole inhibitor
Descriptor: Dual specificity protein kinase CLK1, ethyl 3-[(E)-2-amino-1-cyanoethenyl]-6,7-dichloro-1-methyl-1H-indole-2-carboxylate
Authors:Loll, B, Haltenhof, T, Heyd, F, Wahl, M.C.
Deposit date:2020-01-12
Release date:2020-02-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Conserved Kinase-Based Body-Temperature Sensor Globally Controls Alternative Splicing and Gene Expression.
Mol.Cell, 78, 2020
8B2L
DownloadVisualize
BU of 8b2l by Molmil
Cryo-EM structure of the plant 80S ribosome
Descriptor: 18S rRNA, 25S rRNA, 30S ribosomal protein S15, ...
Authors:Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R.
Deposit date:2022-09-14
Release date:2023-08-23
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Nat.Plants, 9, 2023
3HVJ
DownloadVisualize
BU of 3hvj by Molmil
Rat catechol O-methyltransferase in complex with a catechol-type, N6-propyladenine-containing bisubstrate inhibitor
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Catechol O-methyltransferase, ...
Authors:Ehler, A, Schlatter, D, Stihle, M, Benz, J, Rudolph, M.G.
Deposit date:2009-06-16
Release date:2009-10-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Molecular recognition at the active site of catechol-o-methyltransferase: energetically favorable replacement of a water molecule imported by a bisubstrate inhibitor.
Angew.Chem.Int.Ed.Engl., 48, 2009
9G4U
DownloadVisualize
BU of 9g4u by Molmil
Crystal structure of the human METTL3-METTL14 in complex with small molecule inhibitor Compound 31
Descriptor: 4-[(3~{R})-3-(cyclobutylmethylamino)piperidin-1-yl]-1-[(1~{R})-1-[4-(5-methoxypyridin-3-yl)-1,2,3-triazol-1-yl]ethyl]pyridin-2-one, N6-adenosine-methyltransferase catalytic subunit, N6-adenosine-methyltransferase non-catalytic subunit
Authors:Dutheuil, G, Oukoloff, K.
Deposit date:2024-07-16
Release date:2025-02-12
Last modified:2025-08-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery, Optimization, and Preclinical Pharmacology of EP652, a METTL3 Inhibitor with Efficacy in Liquid and Solid Tumor Models.
J.Med.Chem., 68, 2025
5TV2
DownloadVisualize
BU of 5tv2 by Molmil
Crystal structure of a fragment (1-405) of an elongation factor G from Vibrio vulnificus CMCP6
Descriptor: Elongation factor G
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Cardona-Correa, A, Dubrovska, I, Grimshaw, S, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-11-07
Release date:2016-11-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a fragment (1-405) of an elongation factor G from Vibrio vulnificus CMCP6
To Be Published
7COZ
DownloadVisualize
BU of 7coz by Molmil
Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase in complex with LSB-41
Descriptor: 1,2-ETHANEDIOL, 1-[3-(2-methyl-4-thiophen-2-yl-1,3-thiazol-5-yl)propanoyl]piperidine-4-carboxamide, Glutaminyl-peptide cyclotransferase, ...
Authors:Dileep, K.V, Ihara, K, Sakai, N, Shirozu, M, Zhang, K.Y.J.
Deposit date:2020-08-05
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors.
Int.J.Biol.Macromol., 170, 2020
3HZU
DownloadVisualize
BU of 3hzu by Molmil
Crystal structure of probable thiosulfate sulfurtransferase SSEA (rhodanese) from Mycobacterium tuberculosis
Descriptor: GLYCEROL, SULFATE ION, Thiosulfate sulfurtransferase sseA
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-06-24
Release date:2009-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mycobacterium thermoresistibile as a source of thermostable orthologs of Mycobacterium tuberculosis proteins.
Protein Sci., 21, 2012
5DEG
DownloadVisualize
BU of 5deg by Molmil
Crystal structure of B*27:06 bound to the pVIPR peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, MHC class I antigen, ...
Authors:Loll, B, Fabian, H, Hee, C.S, Huser, H, Uchanska-Ziegler, B, Ziegler, A.
Deposit date:2015-08-25
Release date:2015-11-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Increased Conformational Flexibility of HLA-B*27 Subtypes Associated With Ankylosing Spondylitis.
Arthritis Rheumatol, 68, 2016
5UAB
DownloadVisualize
BU of 5uab by Molmil
MET Tyrosine Kinase Inhibition Enhances the Antitumor Efficacy of an HGF Antibody
Descriptor: CHLORIDE ION, GLYCEROL, Hepatocyte growth factor receptor, ...
Authors:Hoffman, I.D, Lawson, J.D.
Deposit date:2016-12-19
Release date:2017-05-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:MET Tyrosine Kinase Inhibition Enhances the Antitumor Efficacy of an HGF Antibody.
Mol. Cancer Ther., 16, 2017
8J9J
DownloadVisualize
BU of 8j9j by Molmil
Cryo-EM structure of Euglena gracilis complex I, NADH state
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
Authors:Wu, M.C, He, Z.X, Tian, H.T, Hu, Y.Q, Han, F.Z, Zhou, L.
Deposit date:2023-05-03
Release date:2024-02-28
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
Nat Commun, 15, 2024
1H72
DownloadVisualize
BU of 1h72 by Molmil
CRYSTAL STRUCTURE OF HOMOSERINE KINASE COMPLEXED WITH HSE
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, HOMOSERINE KINASE, L-HOMOSERINE, ...
Authors:Krishna, S.S, Zhou, T, Daugherty, M, Osterman, A.L, Zhang, H.
Deposit date:2001-07-02
Release date:2001-09-13
Last modified:2025-10-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for the Catalysis and Substrate Specificity of Homoserine Kinase
Biochemistry, 40, 2001
2EHG
DownloadVisualize
BU of 2ehg by Molmil
Crystal structure of hyperthermophilic archaeal RNase HI
Descriptor: ribonuclease HI
Authors:You, D.J, Chon, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2007-03-06
Release date:2007-09-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Type 1 RNase H from a Hyperthermophilic Archaeon with Double-stranded RNA-dependent RNase Activity
To be Published
4F9C
DownloadVisualize
BU of 4f9c by Molmil
Human CDC7 kinase in complex with DBF4 and XL413
Descriptor: 8-chloro-2-[(2S)-pyrrolidin-2-yl][1]benzofuro[3,2-d]pyrimidin-4(3H)-one, Cell division cycle 7-related protein kinase, Protein DBF4 homolog A, ...
Authors:Hughes, S, Cherepanov, P.
Deposit date:2012-05-18
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of human CDC7 kinase in complex with its activator DBF4.
Nat.Struct.Mol.Biol., 19, 2012
8J9I
DownloadVisualize
BU of 8j9i by Molmil
Cryo-EM structure of Euglena gracilis complex I, turnover state
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
Authors:Wu, M.C, He, Z.X, Tian, H.T, Hu, Y.Q, Han, F.Z, Zhou, L.
Deposit date:2023-05-03
Release date:2024-02-28
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
Nat Commun, 15, 2024
4KQ3
DownloadVisualize
BU of 4kq3 by Molmil
Crystal structure of Anti-IL-17A antibody CNTO3186
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CNTO3186 heavy chain, ...
Authors:Teplyakov, A, Obmolova, G, Malia, T, Gilliland, G.L.
Deposit date:2013-05-14
Release date:2014-03-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural evidence for a constrained conformation of short CDR-L3 in antibodies.
Proteins, 82, 2014
3ERX
DownloadVisualize
BU of 3erx by Molmil
High-resolution structure of Paracoccus pantotrophus pseudoazurin
Descriptor: COPPER (II) ION, Pseudoazurin, SULFATE ION
Authors:Najmudin, S, Pauleta, S.R, Moura, I, Romao, M.J.
Deposit date:2008-10-03
Release date:2009-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The 1.4 A resolution structure of Paracoccus pantotrophus pseudoazurin.
Acta Crystallogr.,Sect.F, 66, 2010
7Y1Q
DownloadVisualize
BU of 7y1q by Molmil
5.0 angstrom cryo-EM structure of transmembrane regions of mouse Basigin/MCT1 in complex with antibody 6E7F1
Descriptor: Isoform 2 of Basigin, Monocarboxylate transporter 1
Authors:Zhang, H, Yang, X, Xue, Y, Huang, Y, Mo, X, Zhang, H, Li, N, Gao, N, Li, X, Wang, S, Gao, Y, Liao, J.
Deposit date:2022-06-08
Release date:2023-06-14
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (5.03 Å)
Cite:Allosteric modulation of monocarboxylate transporters 1 and 4 by targeting their chaperon Basigin-2
To Be Published
1A7T
DownloadVisualize
BU of 1a7t by Molmil
METALLO-BETA-LACTAMASE WITH MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, METALLO-BETA-LACTAMASE, SODIUM ION, ...
Authors:Fitzgerald, P.M.D, Wu, J.K, Toney, J.H.
Deposit date:1998-03-17
Release date:1998-06-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Unanticipated inhibition of the metallo-beta-lactamase from Bacteroides fragilis by 4-morpholineethanesulfonic acid (MES): a crystallographic study at 1.85-A resolution.
Biochemistry, 37, 1998
1NHI
DownloadVisualize
BU of 1nhi by Molmil
Crystal structure of N-terminal 40KD MutL (LN40) complex with ADPnP and one potassium
Descriptor: 1,2-ETHANEDIOL, DNA mismatch repair protein mutL, MAGNESIUM ION, ...
Authors:Hu, X, Machius, M, Yang, W.
Deposit date:2002-12-19
Release date:2003-06-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Monovalent cation dependence and preference of GHKL ATPases and kinases
FEBS Lett., 544, 2003
4FF5
DownloadVisualize
BU of 4ff5 by Molmil
Structure basis of a novel virulence factor GHIP a glycosyl hydrolase 25 of Streptococcus pneumoniae participating in host cell invasion
Descriptor: 1,2-ETHANEDIOL, Glycosyl hydrolase 25
Authors:Wang, D.
Deposit date:2012-05-31
Release date:2013-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural basis of the novel S. pneumoniae virulence factor, GHIP, a glycosyl hydrolase 25 participating in host-cell invasion.
Plos One, 8, 2013
1H8F
DownloadVisualize
BU of 1h8f by Molmil
Glycogen Synthase Kinase 3 beta.
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCOGEN SYNTHASE KINASE-3 BETA
Authors:Dajani, R, Pearl, L.H, Roe, S.M.
Deposit date:2001-02-05
Release date:2002-01-31
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Glycogen Synthase Kinase 3Beta . Structural Basis for Phosphate-Primed Substrate Specificity and Autoinhibition
Cell(Cambridge,Mass.), 105, 2001
1GUB
DownloadVisualize
BU of 1gub by Molmil
Hinge-bending motion of D-allose binding protein from Escherichia coli: three open conformations
Descriptor: D-ALLOSE-BINDING PERIPLASMIC PROTEIN, NICKEL (II) ION
Authors:Magnusson, U, Chaudhuri, B.N, Ko, J, Park, C, Jones, T.A, Mowbray, S.L.
Deposit date:2002-01-24
Release date:2003-03-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of D-Allose Binding Protein from Escherichia Coli Bound to D-Allose at 1.8 A Resolution
J.Mol.Biol., 286, 1999
6HW4
DownloadVisualize
BU of 6hw4 by Molmil
Yeast 20S proteasome in complex with 16
Descriptor: (2~{S})-~{N}-[(2~{S},3~{R})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2-[[(2~{R})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
1RTU
DownloadVisualize
BU of 1rtu by Molmil
USTILAGO SPHAEROGENA RIBONUCLEASE U2
Descriptor: RIBONUCLEASE U2, SULFATE ION
Authors:Noguchi, S, Satow, Y, Uchida, T, Sasaki, C, Matsuzaki, T.
Deposit date:1995-05-12
Release date:1996-11-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ustilago sphaerogena ribonuclease U2 at 1.8 A resolution.
Biochemistry, 34, 1995

245011

数据于2025-11-19公开中

PDB statisticsPDBj update infoContact PDBjnumon