PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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1URN	U1A MUTANT/RNA COMPLEX + GLYCEROL Descriptor: CHLORIDE ION, GLYCEROL, PROTEIN (U1A), ... Authors: Oubridge, C, Ito, N, Evans, P.R, Teo, C.-H, Nagai, K. Deposit date: 1995-01-04 Release date: 1996-03-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature, 372, 1994
2WYL	Apo structure of a metallo-b-lactamase Descriptor: FORMYL GROUP, GLYCEROL, L-ASCORBATE-6-PHOSPHATE LACTONASE ULAG Authors: Garces, F, Fernandez, F.J, Penya-Soler, E, Aguilar, J, Baldoma, L, Coll, M, Badia, J, Vega, M.C. Deposit date: 2009-11-16 Release date: 2010-04-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Molecular Architecture of the Mn(2+)Dependent Lactonase Ulag Reveals an Rnase-Like Metallo-Beta-Lactamase Fold and a Novel Quaternary Structure. J.Mol.Biol., 398, 2010
1ST0	Structure of DcpS bound to m7GpppG Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, YTTRIUM (III) ION, mRNA decapping enzyme Authors: Gu, M, Fabrega, C, Liu, S.W, Liu, H, Kiledjian, M, Lima, C.D. Deposit date: 2004-03-24 Release date: 2004-04-13 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Insights into the structure, mechanism, and regulation of scavenger mRNA decapping activity Mol.Cell, 14, 2004
3EF0	The Structure of Fcp1, an essential RNA polymerase II CTD phosphatase Descriptor: MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, TETRAFLUOROALUMINATE ION Authors: Ghosh, A, Lima, C.D. Deposit date: 2008-09-07 Release date: 2008-12-02 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The structure of Fcp1, an essential RNA polymerase II CTD phosphatase. Mol.Cell, 32, 2008
1ZC5	Structure of the RNA signal essential for translational frameshifting in HIV-1 Descriptor: HIV-1 frameshift RNA signal Authors: Gaudin, C, Mazauric, M.H, Traikia, M, Guittet, E, Yoshizawa, S, Fourmy, D. Deposit date: 2005-04-11 Release date: 2005-06-07 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of the RNA Signal Essential for Translational Frameshifting in HIV-1 J.Mol.Biol., 349, 2005
1L2X	Atomic Resolution Crystal Structure of a Viral RNA Pseudoknot Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA pseudoknot, ... Authors: Egli, M, Minasov, G, Su, L, Rich, A. Deposit date: 2002-02-25 Release date: 2002-03-22 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution. Proc.Natl.Acad.Sci.USA, 99, 2002
1I9F	STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE Descriptor: REV RESPONSE ELEMENT RNA, RSG-1.2 PEPTIDE Authors: Zhang, Q, Harada, K, Cho, H.S, Frankel, A, Wemmer, D.E. Deposit date: 2001-03-19 Release date: 2001-05-25 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural characterization of the complex of the Rev response element RNA with a selected peptide. Chem.Biol., 8, 2001
1LNG	Crystal Structure of the SRP19-7S.S SRP RNA Complex of M. jannaschii Descriptor: 7S.S SRP RNA, MAGNESIUM ION, Signal recognition particle 19 kDa protein Authors: Hainzl, T, Huang, S, Sauer-Eriksson, A.E. Deposit date: 2002-05-03 Release date: 2002-06-07 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of the SRP19 RNA complex and implications for signal recognition particle assembly. Nature, 417, 2002
2A43	Crystal Structure of a Luteoviral RNA Pseudoknot and Model for a Minimal Ribosomal Frameshifting Motif Descriptor: MAGNESIUM ION, RNA Pseudoknot Authors: Pallan, P.S, Marshall, W.S, Harp, J, Jewett III, F.C, Wawrzak, Z, Brown II, B.A, Rich, A, Egli, M. Deposit date: 2005-06-27 Release date: 2005-09-27 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.34 Å) Cite: Crystal Structure of a Luteoviral RNA Pseudoknot and Model for a Minimal Ribosomal Frameshifting Motif Biochemistry, 44, 2005
7ZEX	Complex Cyp33-RRMdelta alpha : UAAUGUCG RNA Descriptor: Isoform 3 of Peptidyl-prolyl cis-trans isomerase E, RNA (5'-R(*UP*AP*AP*UP*GP*UP*CP*G)-3') Authors: Blatter, M, Allain, F, Meylan, C. Deposit date: 2022-03-31 Release date: 2022-05-04 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: RNA binding induces an allosteric switch in Cyp33 to repress MLL1-mediated transcription. Sci Adv, 9, 2023
2RF4	Crystal structure of the RNA Polymerase I subcomplex A14/43 Descriptor: DNA-directed RNA polymerase I subunit RPA4 Authors: Geiger, S.R, Kuhn, C.D, Cramer, P. Deposit date: 2007-09-28 Release date: 2008-01-15 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Functional architecture of RNA polymerase I. Cell(Cambridge,Mass.), 131, 2007
3GS8	An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand Descriptor: 2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE, COBALT HEXAMMINE(III), RNA (5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3'), ... Authors: Spitale, R.C, Volpini, R, Heller, M.G, Krucinska, J, Cristalli, G, Wedekind, J.E. Deposit date: 2009-03-26 Release date: 2009-04-21 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Identification of an imino group indispensable for cleavage by a small ribozyme. J.Am.Chem.Soc., 131, 2009
1KKA	Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) Descriptor: anticodon stem-loop of tRNA(PHE) Authors: Cabello-Villegas, J, Winkler, M.E, Nikonowicz, E.P. Deposit date: 2001-12-06 Release date: 2002-07-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe). J.Mol.Biol., 319, 2002
1RFR	NMR structure of the 30mer stemloop-D of coxsackieviral RNA Descriptor: stemloop-D RNA of the 5'-cloverleaf of coxsackievirus B3 Authors: Ohlenschlager, O, Wohnert, J, Bucci, E, Seitz, S, Hafner, S, Ramachandran, R, Zell, R, Gorlach, M. Deposit date: 2003-11-10 Release date: 2004-03-23 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The structure of the stemloop D subdomain of coxsackievirus B3 cloverleaf RNA and its interaction with the proteinase 3C. STRUCTURE, 12, 2004
1J4Y	Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) Descriptor: anticodon stem-loop of tRNA(Phe) Authors: Cabello-Villegas, J, Winkler, M.E, Nikonowicz, E.P. Deposit date: 2001-12-12 Release date: 2002-07-17 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe). J.Mol.Biol., 319, 2002
2PUS	Unprecedented activation mechanism of a non-canonical RNA-dependent RNA polymerase Descriptor: IBDV VP1 RNA-dependant RNA polymerase Authors: Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N. Deposit date: 2007-05-09 Release date: 2007-11-27 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Activation mechanism of a noncanonical RNA-dependent RNA polymerase. Proc.Natl.Acad.Sci.Usa, 104, 2007
3GS5	An all-RNA hairpin ribozyme A38N1dA variant with a product mimic substrate strand Descriptor: 2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE, COBALT HEXAMMINE(III), RNA (25-MER), ... Authors: Spitale, R.C, Volpini, R, Heller, M.G, Krucinska, J, Cristalli, G, Wedekind, J.E. Deposit date: 2009-03-26 Release date: 2009-04-21 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Identification of an imino group indispensable for cleavage by a small ribozyme. J.Am.Chem.Soc., 131, 2009
1S2F	Average solution structure of a pseudo-5'-splice site from the negative regulator of splicing of Rous Sarcoma virus Descriptor: 5'-R(*GP*GP*GP*GP*AP*GP*UP*GP*GP*UP*UP*UP*GP*UP*AP*UP*CP*CP*UP*UP*CP*CP*C)-3' Authors: Cabello-Villegas, J, Giles, K.E, Soto, A.M, Yu, P, Beemon, K.L, Wang, Y.X. Deposit date: 2004-01-08 Release date: 2004-08-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the pseudo-5' splice site of a retroviral splicing suppressor. Rna, 10, 2004
1S34	Solution structure of residues 907-929 from Rous Sarcoma Virus Descriptor: 5'-R(*GP*GP*GP*GP*AP*GP*UP*GP*GP*UP*UP*UP*GP*UP*AP*UP*CP*CP*UP*UP*CP*CP*C)-3' Authors: Cabello-Villegas, J, Giles, K.E, Soto, A.M, Yu, P, Beemon, K.L, Wang, Y.X. Deposit date: 2004-01-12 Release date: 2004-08-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the pseudo-5' splice site of a retroviral splicing suppressor. Rna, 10, 2004
2O5J	Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analog Descriptor: 5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3', ... Authors: Vassylyev, D.G, Vassylyeva, M.N. Deposit date: 2006-12-06 Release date: 2007-07-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis for substrate loading in bacterial RNA polymerase. Nature, 448, 2007
2O5I	Crystal structure of the T. thermophilus RNA polymerase elongation complex Descriptor: 5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3', ... Authors: Vassylyev, D.G, Tahirov, T.H, Vassylyeva, M.N. Deposit date: 2006-12-06 Release date: 2007-07-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for transcription elongation by bacterial RNA polymerase. Nature, 448, 2007
3GS1	An all-RNA Hairpin Ribozyme with mutation A38N1dA Descriptor: 2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE, COBALT HEXAMMINE(III), RNA (5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3'), ... Authors: Spitale, R.C, Volpini, R, Heller, M.G, Krucinska, J, Cristalli, G, Wedekind, J.E. Deposit date: 2009-03-26 Release date: 2009-05-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Identification of an imino group indispensable for cleavage by a small ribozyme. J.Am.Chem.Soc., 131, 2009
7BBB	Solution structure of C-terminal RecA and RRM domains of the DEAD box helicase DbpA Descriptor: ATP-dependent RNA helicase DbpA Authors: Wurm, J.P, Sprangers, R. Deposit date: 2020-12-17 Release date: 2021-07-14 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Structural basis for the activation of the DEAD-box RNA helicase DbpA by the nascent ribosome. Proc.Natl.Acad.Sci.USA, 118, 2021
4DMG	Thermus thermophilus m5C1942 methyltransferase RlmO Descriptor: Putative uncharacterized protein TTHA1493, S-ADENOSYLMETHIONINE Authors: Larsen, H.G, Rasmussen, A, Giessing, A.M.B, Jogl, G, Kirpekar, F. Deposit date: 2012-02-07 Release date: 2012-06-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Identification and Characterization of the Thermus thermophilus 5-Methylcytidine (m5C) Methyltransferase Modifying 23 S Ribosomal RNA (rRNA) Base C1942. J.Biol.Chem., 287, 2012
4C40	The molecular recognition of kink turn structure by the L7Ae class of proteins Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3' Authors: Huang, L, Lilley, D.M.J. Deposit date: 2013-08-28 Release date: 2013-11-06 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins. RNA, 19, 2013

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