PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3AVU	Structure of viral RNA polymerase complex 2 Descriptor: CALCIUM ION, Elongation factor Ts, Elongation factor Tu, ... Authors: Takeshita, D, Tomita, K. Deposit date: 2011-03-08 Release date: 2012-01-18 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.907 Å) Cite: Molecular basis for RNA polymerization by Q beta replicase Nat.Struct.Mol.Biol., 19, 2012
3AVW	Structure of viral RNA polymerase complex 4 Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Elongation factor Ts, ... Authors: Takeshita, D, Tomita, K. Deposit date: 2011-03-08 Release date: 2012-01-18 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.602 Å) Cite: Molecular basis for RNA polymerization by Q beta replicase Nat.Struct.Mol.Biol., 19, 2012
3AVX	Structure of viral RNA polymerase complex 5 Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Elongation factor Ts, ... Authors: Takeshita, D, Tomita, K. Deposit date: 2011-03-08 Release date: 2012-01-18 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.406 Å) Cite: Molecular basis for RNA polymerization by Q beta replicase Nat.Struct.Mol.Biol., 19, 2012
3G80	Nodamura virus protein b2, RNA-binding domain Descriptor: Protein B2 Authors: Korber, S, Shaik Syed Ali, P, Chen, J.C. Deposit date: 2009-02-11 Release date: 2010-01-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of the RNA-Binding Domain of Nodamura Virus Protein B2, a Suppressor of RNA Interference. Biochemistry, 48, 2009
4J50	Crystal Structure of an Expanded RNA CAG Repeat Descriptor: PHOSPHATE ION, RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') Authors: Park, H, Disney, M.D. Deposit date: 2013-02-07 Release date: 2013-02-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.65 Å) Cite: A dynamic structural model of expanded RNA CAG repeats: a refined X-ray structure and computational investigations using molecular dynamics and umbrella sampling simulations. J.Am.Chem.Soc., 135, 2013
4N2S	Crystal Structure of THA8 in complex with Zm1a-6 RNA Descriptor: THA8 RNA binding protein, Zm1a-6 RNA Authors: Ke, J, Chen, R.Z, Ban, T, Zhou, X.E, Gu, X, Brunzelle, J.S, Zhu, J.K, Melcher, K, Xu, H.E. Deposit date: 2013-10-06 Release date: 2013-10-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis for RNA recognition by a dimeric PPR-protein complex. Nat.Struct.Mol.Biol., 20, 2013
3AVV	Structure of viral RNA polymerase complex 3 Descriptor: CALCIUM ION, Elongation factor Ts, Elongation factor Tu, ... Authors: Takeshita, D, Tomita, K. Deposit date: 2011-03-08 Release date: 2012-01-18 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.119 Å) Cite: Molecular basis for RNA polymerization by Q beta replicase Nat.Struct.Mol.Biol., 19, 2012
3AVY	Structure of viral RNA polymerase complex 6 Descriptor: 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, Elongation factor Ts, ... Authors: Takeshita, D, Tomita, K. Deposit date: 2011-03-08 Release date: 2012-01-18 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.616 Å) Cite: Molecular basis for RNA polymerization by Q beta replicase Nat.Struct.Mol.Biol., 19, 2012
333D	THE CRYSTAL STRUCTURE OF AN RNA OLIGOMER INCORPORATING TANDEM ADENOSINE-INOSINE MISMATCHES Descriptor: CALCIUM ION, RNA (5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3') Authors: Carter, R.J, Baeyens, K.J, SantaLucia Jr, J, Turner, D.H, Holbrook, S.R. Deposit date: 1997-05-20 Release date: 1997-10-16 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.52 Å) Cite: The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches. Nucleic Acids Res., 25, 1997
3BER	Human DEAD-box RNA-helicase DDX47, conserved domain I in complex with AMP Descriptor: ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, Probable ATP-dependent RNA helicase DDX47, ... Authors: Karlberg, T, Busam, R.D, Arrowsmith, C.H, Berglund, H, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Kallas, A, Kotenyova, T, Lehtio, L, Moche, M, Nilsson, M.E, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Svensson, L, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Welin, M, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC) Deposit date: 2007-11-20 Release date: 2007-12-04 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Comparative Structural Analysis of Human DEAD-Box RNA Helicases. Plos One, 5, 2010
8Q1N	Cyclic peptide binder of the WBM-site of WDR5 Descriptor: Cyclic peptide inhibitor, WD repeat-containing protein 5 Authors: Schmeing, S, Chang, J.Y, t Hart, P, Gasper, R. Deposit date: 2023-08-01 Release date: 2023-09-06 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.843 Å) Cite: Macrocyclic peptides as inhibitors of WDR5-lncRNA interactions. Chem.Commun.(Camb.), 59, 2023
3N89	KH domains Descriptor: Defective in germ line development protein 3, isoform a Authors: Nakel, K, Hartung, S.A, Bonneau, F, Eckmann, C.R, Conti, E. Deposit date: 2010-05-28 Release date: 2010-09-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.789 Å) Cite: Four KH domains of the C. elegans Bicaudal-C ortholog GLD-3 form a globular structural platform. Rna, 16, 2010
7ODN	Crystal structure of TD1-mebendazole complex Descriptor: CHLORIDE ION, Designed Ankyrin Repeat Protein (DARPIN) D1, GLYCEROL, ... Authors: Oliva, M.A, Bonato, F, Diaz, J.F. Deposit date: 2021-04-30 Release date: 2022-04-06 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.33 Å) Cite: Effect of Clinically Used Microtubule Targeting Drugs on Viral Infection and Transport Function. Int J Mol Sci, 23, 2022
1UVJ	The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 7nt RNA Descriptor: 5'-R(*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase Authors: Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M. Deposit date: 2004-01-21 Release date: 2004-02-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure, 12, 2004
3BX3	Puf4 T650C/C724R Mutant bound to Cox17 RNA 3' UTR recognition sequence Descriptor: COX17 RNA target sequence, Protein PUF4, SULFATE ION Authors: Miller, M.T, Higgin, J.J, Hall, T.M.T. Deposit date: 2008-01-11 Release date: 2008-03-11 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3 Å) Cite: Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p Nat.Struct.Mol.Biol., 15, 2008
1DV4	PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS Descriptor: 16S RIBOSOMAL RNA, OCTADECATUNGSTENYL DIPHOSPHATE, RIBOSOMAL PROTEIN S5, ... Authors: Tocilj, A, Schlunzen, F, Janell, D, Gluhmann, M, Hansen, H, Harms, J, Bashan, A, Bartels, H, Agmon, I, Franceschi, F, Yonath, A. Deposit date: 2000-01-19 Release date: 2000-02-02 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (4.5 Å) Cite: The small ribosomal subunit from Thermus thermophilus at 4.5 A resolution: pattern fittings and the identification of a functional site. Proc.Natl.Acad.Sci.USA, 96, 1999
2V7R	Crystal structure of a human tRNAGly microhelix at 1.2 Angstrom resolution Descriptor: HUMAN TRNAGLY MICROHELIX Authors: Foerster, C, Mankowska, M, Fuerste, J.P, Perbandt, M, Betzel, C, Erdmann, V.A. Deposit date: 2007-08-01 Release date: 2008-03-18 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Crystal Structure of a Human Trnagly Microhelix at 1.2 A Resolution. Biochem.Biophys.Res.Commun., 368, 2008
1UVM	The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5NT RNA conformation A Descriptor: 5'-R(*UP*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase Authors: Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M. Deposit date: 2004-01-21 Release date: 2004-02-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure, 12, 2004
2XBM	Crystal structure of the dengue virus methyltransferase bound to a 5'- capped octameric RNA Descriptor: 5'-(*G3AP*GP*AP*AP*CP*CP*UP*GP*A)-3', GLYCEROL, NONSTRUCTURAL PROTEIN NS5, ... Authors: Yap, L.J, Luo, D.H, Chung, K.Y, Lim, S.P, Bodenreider, C, Noble, C, Shi, P.Y, Lescar, J. Deposit date: 2010-04-13 Release date: 2010-09-29 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal Structure of the Dengue Virus Methyltransferase Bound to a 5'-Capped Octameric RNA Plos One, 5, 2010
1UVI	The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 6nt RNA Descriptor: 5'-R(*UP*UP*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase Authors: Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M. Deposit date: 2004-01-21 Release date: 2004-02-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure, 12, 2004
1UVN	The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 ca2+ inhibition complex Descriptor: 5'-R(*UP*UP*UP*UP*CP*CP)-3', CALCIUM ION, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M. Deposit date: 2004-01-21 Release date: 2004-02-26 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3 Å) Cite: The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure, 12, 2004
1UVL	The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5nt RNA. Conformation B Descriptor: 5'-R(*UP*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase Authors: Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M. Deposit date: 2004-01-21 Release date: 2004-02-26 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure, 12, 2004
2RRA	Solution structure of RNA binding domain in human Tra2 beta protein in complex with RNA (GAAGAA) Descriptor: 5'-R(*GP*AP*AP*GP*AP*A)-3', cDNA FLJ40872 fis, clone TUTER2000283, ... Authors: Tsuda, K, Kuwasako, K, Takahashi, M, Someya, T, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Sugano, S, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2010-06-17 Release date: 2011-04-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural basis for the dual RNA-recognition modes of human Tra2-beta RRM. Nucleic Acids Res., 39, 2011
3B7G	Human DEAD-box RNA helicase DDX20, Conserved domain I (DEAD) in complex with AMPPNP (Adenosine-(Beta,gamma)-imidotriphosphate) Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable ATP-dependent RNA helicase DDX20 Authors: Karlberg, T, Tresaugues, L, Arrowsmith, C.H, Berglund, H, Busam, R.D, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Kallas, A, Kotenyova, T, Lehtio, L, Moche, M, Nilsson, M.E, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Svensson, L, Thorsell, A.G, Van Den Berg, S, Weigelt, J, Welin, M, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC) Deposit date: 2007-10-30 Release date: 2007-11-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Comparative Structural Analysis of Human DEAD-Box RNA Helicases. Plos One, 5, 2010
1F85	SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIIE Descriptor: HCV-1B IRES RNA DOMAIN IIIE Authors: Lukavsky, P.J, Otto, G.A, Lancaster, A.M, Sarnow, P, Puglisi, J.D. Deposit date: 2000-06-28 Release date: 2000-11-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function. Nat.Struct.Biol., 7, 2000

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