PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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284D	THE BI-LOOP, A NEW GENERAL FOUR-STRANDED DNA MOTIF Descriptor: BARIUM ION, DNA (5'-CD(*P*AP*TP*TP*CP*AP*TP*TP*C)-3'), SODIUM ION Authors: Salisbury, S.A, Wilson, S.E, Powell, H.R, Kennard, O, Lubini, P, Sheldrick, G.M, Escaja, N, Alazzouzi, E, Grandas, A, Pedroso, E. Deposit date: 1996-09-11 Release date: 1997-06-11 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.1 Å) Cite: The bi-loop, a new general four-stranded DNA motif. Proc.Natl.Acad.Sci.USA, 94, 1997
6KJM	Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis Descriptor: ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ... Authors: Ramachandran, R, Shukla, A, Afsar, M. Deposit date: 2019-07-22 Release date: 2020-07-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A. J.Struct.Biol., 213, 2021
1A2E	CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA DECAMER CONTAINING A CISPLATIN INTERSTRAND CROSS-LINK ADDUCT Descriptor: Cisplatin, DNA (5'-D(*CP*CP*TP*CP*GP*CP*TP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*AP*GP*CP*GP*AP*GP*G)-3') Authors: Coste, F, Zelwer, C. Deposit date: 1998-01-05 Release date: 1999-04-12 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 A resolution: hydration at the platinated site. Nucleic Acids Res., 27, 1999
1N5G	NMR Structures of the Zinc Finger Domain of Human DNA Polymerase-alpha Descriptor: 38-mer of DNA polymerase alpha catalytic subunit Authors: Evanics, F, Maurmann, L, Yang, W.W, Bose, R.N. Deposit date: 2002-11-05 Release date: 2003-11-25 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Nuclear magnetic resonance structures of the zinc finger domain of human DNA polymerase-alpha Biochim.Biophys.Acta, 1651, 2003
7VN8	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning GTCACGTGAC Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*GP*TP*CP*AP*CP*GP*TP*GP*AP*CP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... Authors: Nosaki, S, Tanokura, M, Miyakawa, T. Deposit date: 2021-10-10 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN7	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning GACACGTGTC Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*GP*AP*CP*AP*CP*GP*TP*GP*TP*CP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... Authors: Nosaki, S, Tanokura, M, Miyakawa, T. Deposit date: 2021-10-10 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.11 Å) Cite: Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN6	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning CGCACGTGCG Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*CP*GP*CP*AP*CP*GP*TP*GP*CP*GP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... Authors: Nosaki, S, Tanokura, M, Miyakawa, T. Deposit date: 2021-10-10 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN3	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning CACACGTGTG Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*GP*TP*GP*TP*GP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... Authors: Nosaki, S, Tanokura, M, Miyakawa, T. Deposit date: 2021-10-10 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN4	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TCCACGTGGA Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*TP*CP*CP*AP*CP*GP*TP*GP*AP*AP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... Authors: Nosaki, S, Tanokura, M, Miyakawa, T. Deposit date: 2021-10-10 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN2	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning ATCACGTGAT Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*AP*TP*CP*AP*CP*GP*TP*GP*AP*TP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... Authors: Nosaki, S, Tanokura, M, Miyakawa, T. Deposit date: 2021-10-10 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN5	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TTCACGTGAA Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*TP*TP*CP*AP*CP*GP*TP*GP*AP*AP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... Authors: Nosaki, S, Tanokura, M, Miyakawa, T. Deposit date: 2021-10-10 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
3II6	Structure of human Xrcc4 in complex with the tandem BRCT domains of DNA LigaseIV. Descriptor: CHLORIDE ION, DNA ligase 4, DNA repair protein XRCC4 Authors: Meesala, S, Junop, M. Deposit date: 2009-07-31 Release date: 2009-08-11 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and functional interaction between the human DNA repair proteins DNA ligase IV and XRCC4 MOL.CELL.BIOL., 11, 2009
6KRH	Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis Descriptor: ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ... Authors: Ramachandran, R, Shukla, A, Afsar, M. Deposit date: 2019-08-21 Release date: 2020-08-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity. Acta Crystallogr D Struct Biol, 77, 2021
1QHG	STRUCTURE OF DNA HELICASE MUTANT WITH ADPNP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-DEPENDENT HELICASE PCRA, MAGNESIUM ION Authors: Soultanas, P, Dillingham, M.S, Velankar, S.S, Wigley, D.B. Deposit date: 1999-05-14 Release date: 1999-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: DNA binding mediates conformational changes and metal ion coordination in the active site of PcrA helicase. J.Mol.Biol., 290, 1999
1AW4	STRUCTURAL BASIS OF DNA FOLDING AND RECOGNITION IN AMP-DNA APTAMER COMPLEX, NMR, 7 STRUCTURES Descriptor: ADENOSINE MONOPHOSPHATE, ATP-BINDING DNA APTAMER Authors: Lin, C.H, Patel, D.J. Deposit date: 1997-10-09 Release date: 1998-04-15 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP. Chem.Biol., 4, 1997
467D	The structure of a decamer forming a four-way junction Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*AP*CP*CP*GP*G)-3') Authors: Ortiz-Lombardia, M, Coll, M. Deposit date: 1999-04-22 Release date: 2000-04-22 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Crystal structure of a DNA Holliday junction Nat.Struct.Biol., 6, 1999
4CC5	Fragment-Based Discovery of 6 Azaindazoles As Inhibitors of Bacterial DNA Ligase Descriptor: 2-chloranyl-6-(1H-1,2,4-triazol-3-yl)pyrazine, DNA LIGASE, SULFATE ION Authors: Howard, S, Amin, N, Benowitz, A.B, Chiarparin, E, Cui, H, Deng, X, Heightman, T.D, Holmes, D.J, Hopkins, A, Huang, J, Jin, Q, Kreatsoulas, C, Martin, A.C.L, Massey, F, McCloskey, L, Mortenson, P.N, Pathuri, P, Tisi, D, Williams, P.A. Deposit date: 2013-10-18 Release date: 2014-06-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Fragment-Based Discovery of 6-Azaindazoles as Inhibitors of Bacterial DNA Ligase. Acs Med.Chem.Lett., 4, 2013
4CC6	Fragment-Based Discovery of 6 Azaindazoles As Inhibitors of Bacterial DNA Ligase Descriptor: 2-{[2-(1H-pyrazolo[3,4-c]pyridin-3-yl)-6-(trifluoromethyl)pyridin-4-yl]amino}ethanol, DNA LIGASE, SULFATE ION Authors: Howard, S, Amin, N, Benowitz, A.B, Chiarparin, E, Cui, H, Deng, X, Heightman, T.D, Holmes, D.J, Hopkins, A, Huang, J, Jin, Q, Kreatsoulas, C, Martin, A.C.L, Massey, F, McCloskey, L, Mortenson, P.N, Pathuri, P, Tisi, D, Williams, P.A. Deposit date: 2013-10-18 Release date: 2014-06-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Fragment-Based Discovery of 6-Azaindazoles as Inhibitors of Bacterial DNA Ligase. Acs Med.Chem.Lett., 4, 2013
1AL9	NMR STUDY OF DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN, MINIMIZED AVERAGE STRUCTURE Descriptor: 4-METHYLBENZYL-N-BIS[DAUNOMYCIN], DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') Authors: Robinson, H, Wang, A.H.-J. Deposit date: 1997-06-12 Release date: 1997-09-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy. Biochemistry, 36, 1997
5HRT	Crystal structure of mouse autotaxin in complex with a DNA aptamer Descriptor: CALCIUM ION, CHLORIDE ION, Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, ... Authors: Kato, K, Nishimasu, H, Morita, J, Ishitani, R, Nureki, O. Deposit date: 2016-01-24 Release date: 2016-04-06 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.997 Å) Cite: Structural basis for specific inhibition of Autotaxin by a DNA aptamer Nat.Struct.Mol.Biol., 23, 2016
3QEA	Crystal structure of human exonuclease 1 Exo1 (WT) in complex with DNA (complex II) Descriptor: BARIUM ION, DNA (5'-D(P*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), ... Authors: Orans, J, McSweeney, E.A, Iyer, R.R, Hast, M.A, Hellinga, H.W, Modrich, P, Beese, L.S. Deposit date: 2011-01-20 Release date: 2011-04-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family. Cell(Cambridge,Mass.), 145, 2011
1AMD	NMR STUDY OF DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN WP-652, MINIMIZED AVERAGE STRUCTURE Descriptor: BIS-DAUNORUBICIN, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') Authors: Robinson, H, Wang, A.H.-J. Deposit date: 1997-06-12 Release date: 1997-09-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy. Biochemistry, 36, 1997
1N37	NMR Solution Structure of the Anthracycline Respinomycin D Intercalation Complex with a Double Stranded DNA Molecule (AGACGTCT)2 Descriptor: 5'-D(*AP*GP*AP*CP*GP*TP*CP*T)-3', RESPINOMYCIN D Authors: Maynard, A.J, Williams, H.E.L, Searle, M.S. Deposit date: 2002-10-25 Release date: 2003-01-28 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: DNA recognition by the Anthracycline Antibiotic Respinomycin D: NMR Structure of the Intercalation Complex with d(AGACGTCT)2 Org.Biomol.Chem., 1, 2003
3QE9	Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I) Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), ... Authors: Orans, J, McSweeney, E.A, Iyer, R.R, Hast, M.A, Hellinga, H.W, Modrich, P, Beese, L.S. Deposit date: 2011-01-20 Release date: 2011-04-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family. Cell(Cambridge,Mass.), 145, 2011
3O1M	Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase AlkB, DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), ... Authors: Yi, C, Jia, G, Hou, G, Dai, Q, Zhang, W, Zheng, G, Jian, X, Yang, C.-G, Cui, Q, He, C. Deposit date: 2010-07-21 Release date: 2010-11-17 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase. Nature, 468, 2010

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