PDB: 2041 resultsInfo pagesStatus searchChemie searchBIRD

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6UQO	ClpA/ClpP Engaged State bound to RepA-GFP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp endopeptidase proteolytic subunit ClpP, ATP-dependent Clp protease ATP-binding subunit ClpA, ... Authors: Lopez, K.L, Rizo, A.N, Southworth, D.R. Deposit date: 2019-10-21 Release date: 2020-04-22 Last modified: 2022-03-16 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Conformational plasticity of the ClpAP AAA+ protease couples protein unfolding and proteolysis. Nat.Struct.Mol.Biol., 27, 2020
4HVF	Crystal structure of green fluorescent protein lanGFP(Branchiostoma Lanceolatum) Descriptor: GLYCEROL, Green fluorescent protein blFP-Y6 Authors: Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V. Deposit date: 2012-11-06 Release date: 2013-09-18 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine. Acta Crystallogr.,Sect.D, 69, 2013
3EVR	Crystal structure of Calcium bound monomeric GCAMP2 Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ... Authors: Wang, Q, Shui, B, Kotlikoff, M.I, Sondermann, H. Deposit date: 2008-10-13 Release date: 2008-12-09 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Basis for Calcium Sensing by GCaMP2. Structure, 16, 2008
3EVU	Crystal structure of Calcium bound dimeric GCAMP2 Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ... Authors: Wang, Q, Shui, B, Kotlikoff, M.I, Sondermann, H. Deposit date: 2008-10-13 Release date: 2008-12-09 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural Basis for Calcium Sensing by GCaMP2. Structure, 16, 2008
3EVV	Crystal Structure of Calcium bound dimeric GCAMP2 (#2) Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ... Authors: Wang, Q, Shui, B, Kotlikoff, M.I, Sondermann, H. Deposit date: 2008-10-13 Release date: 2008-12-09 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural Basis for Calcium Sensing by GCaMP2. Structure, 16, 2008
7Z01	Z-SBTubA4 photoswitch bound to tubulin-DARPin D1 complex Descriptor: 2-methoxy-5-[2-(5,6,7-trimethoxy-1,3-benzothiazol-2-yl)ethyl]phenol, CALCIUM ION, Designed Ankyrin Repeat Protein (DARPIN) D1, ... Authors: Wranik, M, Weinert, T, Standfuss, J, Steinmetz, M. Deposit date: 2022-02-21 Release date: 2022-03-30 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.82 Å) Cite: In Vivo Photocontrol of Microtubule Dynamics and Integrity, Migration and Mitosis, by the Potent GFP-Imaging-Compatible Photoswitchable Reagents SBTubA4P and SBTub2M. J.Am.Chem.Soc., 144, 2022
7Z02	Z-SBTub2M photoswitch bound to tubulin-DARPin D1 complex Descriptor: 6-methyl-2-[2-(3,4,5-trimethoxyphenyl)ethyl]-1,3-benzothiazole, Designed Ankyrin Repeat Protein (DARPIN) D1, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Wranik, M, Weinert, T, Standfuss, J, Steinmetz, M. Deposit date: 2022-02-21 Release date: 2022-03-30 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.36 Å) Cite: In Vivo Photocontrol of Microtubule Dynamics and Integrity, Migration and Mitosis, by the Potent GFP-Imaging-Compatible Photoswitchable Reagents SBTubA4P and SBTub2M. J.Am.Chem.Soc., 144, 2022
8DJ8	Crystal Structure of Calgreen 1 protein Descriptor: Calgreen One Authors: Hung, L.-W, Nguyen, H.B, Waldo, G. Deposit date: 2022-06-30 Release date: 2023-07-05 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and Function of Engineered Variants of GFP-type Green Fluorescent protein from Corynactis californica (tentative) To Be Published
6FSQ	Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD) Descriptor: MALONATE ION, SODIUM ION, alphaRep A3_bGFPD Authors: Li de la Sierra-Gallay, I, Leger, C. Deposit date: 2018-02-20 Release date: 2018-08-08 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Ligand-induced conformational switch in an artificial bidomain protein scaffold. Sci Rep, 9, 2019
6Y1G	Photoconverted HcRed in its optoacoustic state Descriptor: 1,2-ETHANEDIOL, GFP-like non-fluorescent chromoprotein Authors: Janowski, R, Fuenzalida-Werner, J.P, Mishra, K, Stiel, A.C, Niessing, D. Deposit date: 2020-02-12 Release date: 2020-07-29 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Challenging a Preconception: Optoacoustic Spectrum Differs from the Optical Absorption Spectrum of Proteins and Dyes for Molecular Imaging. Anal.Chem., 92, 2020
6YLS	mEos4b - Directionality of Optical Properties of Fluorescent Proteins Descriptor: CHLORIDE ION, Green to red photoconvertible GFP-like protein EosFP, SODIUM ION Authors: Myskova, J, Rybakova, O, Brynda, J, Lazar, J. Deposit date: 2020-04-07 Release date: 2020-12-16 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Directionality of light absorption and emission in representative fluorescent proteins. Proc.Natl.Acad.Sci.USA, 117, 2020
8AW4	Structure of a complex of biosynthetic proteins bB-E3 and bGFPD-YY Descriptor: ALPHAREP bB-E3, ALPHAREP bGFPD-YY Authors: Li de la Sierra-Gallay, I. Deposit date: 2022-08-29 Release date: 2022-12-28 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Hot spot induction allows selection of protein binders targeted to a predefined region of a bait protein To Be Published
6XZF	Nanobody in complex with eGFP Descriptor: Nanobody targeted against eGFP, TERBIUM(III) ION, eGFP Authors: Pompidor, G, Zimmermann, S, Loew, C, Schneider, T. Deposit date: 2020-02-04 Release date: 2021-02-17 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Engineered nanobodies with a lanthanide binding motif for crystallographic phasing To Be Published
4DKN	Crystal structure of amphioxus green fluorescent protein, GFPA1 Descriptor: AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPA1 Authors: Bomati, E.K, Deheyn, D.D. Deposit date: 2012-02-03 Release date: 2013-05-15 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Fluorescent proteins in Amphioxus have strickingly different brightness, yet only few (but key) molecular differences To be Published
4DKM	Crystal Structure of Amphioxus GFPc1a Descriptor: Amphioxus Green Fluorescent Protein, GFPc1a Authors: Deheyn, D.D, Bomati, E.K. Deposit date: 2012-02-03 Release date: 2013-05-15 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Fluorescent proteins in Amphioxus have strickingly different brightness, yet only few (but key) molecular differences To be Published
6GFP	cyanobacterial GAPDH with NADP bound Descriptor: FORMIC ACID, Glyceraldehyde-3-phosphate dehydrogenase, MAGNESIUM ION, ... Authors: McFarlane, C.R, Briggs, L, Murray, J.W. Deposit date: 2018-05-01 Release date: 2019-05-08 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Structural basis of light-induced redox regulation in the Calvin-Benson cycle in cyanobacteria. Proc.Natl.Acad.Sci.USA, 116, 2019
1GFP	OMPF PORIN (MUTANT R42C) Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, MATRIX PORIN OUTER MEMBRANE PROTEIN F Authors: Lou, K.-L, Schirmer, T. Deposit date: 1996-05-08 Release date: 1996-12-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis. J.Biol.Chem., 271, 1996
2GFP	Structure of the Multidrug Transporter EmrD from Escherichia coli Descriptor: Multidrug resistance protein D Authors: Yin, Y, He, X, Szewczyk, P, Nguyen, T, Chang, G. Deposit date: 2006-03-22 Release date: 2006-05-16 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structure of the multidrug transporter EmrD from Escherichia coli Science, 312, 2006
7GFP	Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with RAL-THA-6b94ceba-5 (Mpro-x11801) Descriptor: 2-[3-(acetamidomethyl)-5-chlorophenyl]-N-(4-methylpyridin-3-yl)acetamide, 3C-like proteinase, DIMETHYL SULFOXIDE Authors: Fearon, D, Aimon, A, Aschenbrenner, J.C, Balcomb, B.H, Bertram, F.K.R, Brandao-Neto, J, Dias, A, Douangamath, A, Dunnett, L, Godoy, A.S, Gorrie-Stone, T.J, Koekemoer, L, Krojer, T, Lithgo, R.M, Lukacik, P, Marples, P.G, Mikolajek, H, Nelson, E, Owen, C.D, Powell, A.J, Rangel, V.L, Skyner, R, Strain-Damerell, C.M, Thompson, W, Tomlinson, C.W.E, Wild, C, Walsh, M.A, von Delft, F. Deposit date: 2023-08-11 Release date: 2023-11-08 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.769 Å) Cite: Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors. Science, 382, 2023
4GFP	2.7 Angstrom resolution structure of 3-phosphoshikimate 1-carboxyvinyltransferase (AroA) from Coxiella burnetii in a second conformational state Descriptor: 3-phosphoshikimate 1-carboxyvinyltransferase, BETA-MERCAPTOETHANOL Authors: Light, S.H, Minasov, G, Krishna, S.N, Shuvalova, L, Papazisi, L, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2012-08-03 Release date: 2012-08-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: 2.7 Angstrom resolution structure of 3-phosphoshikimate 1-carboxyvinyltransferase (AroA) from Coxiella burnetii in second conformational state TO BE PUBLISHED
8GFP	Crystal structure of soluble lytic transglycosylase Cj0843 of Campylobacter jejuni in complex with N-acetyl-2,3-dehydro-2-deoxyneuraminic acid inhibitor Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, CITRIC ACID, Lytic transglycosylase domain-containing protein, ... Authors: van den Akker, F, Kumar, V. Deposit date: 2023-03-08 Release date: 2023-05-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Exploring the inhibition of the soluble lytic transglycosylase Cj0843c of Campylobacter jejuni via targeting different sites with different scaffolds. Protein Sci., 32, 2023
3GFP	Structure of the C-terminal domain of the DEAD-box protein Dbp5 Descriptor: DEAD box protein 5 Authors: Erzberger, J.P, Dossani, Z.Y, Weirich, C.S, Weis, K, Berger, J.M. Deposit date: 2009-02-27 Release date: 2009-09-01 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure of the C-terminus of the mRNA export factor Dbp5 reveals the interaction surface for the ATPase activator Gle1 Proc.Natl.Acad.Sci.USA, 106, 2009
2WSN	Structure of Enhanced Cyan Fluorescent Protein at physiological pH Descriptor: GREEN FLUORESCENT PROTEIN Authors: Lelimousin, M, Noirclerc-Savoye, M, Lazareno-Saez, C, Paetzold, B, Le Vot, S, Chazal, R, Macheboeuf, P, Field, M.J, Bourgeois, D, Royant, A. Deposit date: 2009-09-08 Release date: 2009-09-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.37 Å) Cite: Intrinsic Dynamics in Ecfp and Cerulean Control Fluorescence Quantum Yield. Biochemistry, 48, 2009
5LEM	Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_11_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein Descriptor: DD_Off7_11_3G124, Green fluorescent protein, Maltose-binding periplasmic protein Authors: Batyuk, A, Wu, Y, Mittl, P.R, Plueckthun, A. Deposit date: 2016-06-30 Release date: 2017-08-02 Last modified: 2019-10-16 Method: X-RAY DIFFRACTION (2.98 Å) Cite: Rigidly connected multispecific artificial binders with adjustable geometries. Sci Rep, 7, 2017
4H48	1.45 angstrom CyPet Structure at pH7.0 Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Green fluorescent protein Authors: Hu, X.-J, Liu, R. Deposit date: 2012-09-17 Release date: 2013-09-18 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Structure insight of the fluorescent state of CyPet To be Published

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