PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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4E2K	The structure of the S. aureus DnaG RNA Polymerase Domain Descriptor: BENZAMIDINE, DNA primase Authors: Rymer, R.U, Solorio, F.A, Clement, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-08 Release date: 2012-08-01 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EBE	Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', ... Authors: Eoff, R.L, Ketkar, A, Banerjee, S. Deposit date: 2012-03-23 Release date: 2012-06-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota. J.Am.Chem.Soc., 134, 2012
4EDK	The structure of the S. aureus DnaG RNA Polymerase Domain bound to GTP and Manganese Descriptor: BENZAMIDINE, DNA primase, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-27 Release date: 2012-07-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EE1	The structure of the S. aureus DnaG RNA Polymerase Domain bound to CTP and Manganese Descriptor: BENZAMIDINE, CYTIDINE-5'-TRIPHOSPHATE, DNA primase, ... Authors: Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-28 Release date: 2012-07-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
3L2P	Human DNA Ligase III Recognizes DNA Ends by Dynamic Switching Between Two DNA Bound States Descriptor: 5'-D(*GP*CP*CP*AP*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*CP*CP*G)-3', 5'-D(*GP*TP*CP*GP*GP*AP*CP*TP*G)-3', 5'-D(P*CP*GP*GP*GP*AP*TP*GP*CP*GP*TP*C)-3', ... Authors: Cotner-Gohara, E.A, Kim, I.K, Hammel, M, Tainer, J.A, Tomkinson, A, Ellenberger, T. Deposit date: 2009-12-15 Release date: 2010-07-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Human DNA Ligase III Recognizes DNA Ends by Dynamic Switching between Two DNA-Bound States. Biochemistry, 49, 2010
8IFK	Cryo-EM structure of monomeric SPARTA gRNA-ssDNA target complex Descriptor: MAGNESIUM ION, Piwi domain-containing protein, TIR domain-containing protein, ... Authors: Zhang, J.T, Jia, N. Deposit date: 2023-02-18 Release date: 2024-01-17 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (2.54 Å) Cite: Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system. Nat.Chem.Biol., 20, 2024
2GLO	Solution structure of the Brinker DNA binding domain in complex with the omb enhancer Descriptor: 5'-D(*GP*TP*TP*GP*AP*CP*GP*CP*CP*TP*CP*A)-3', 5'-D(*TP*GP*AP*GP*GP*CP*GP*TP*CP*AP*AP*C)-3', brinker CG9653-PA Authors: Cordier, F, Hartmann, B, Rogowski, M, Affolter, M, Grzesiek, S. Deposit date: 2006-04-05 Release date: 2006-08-29 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: DNA recognition by the brinker repressor - an extreme case of coupling between binding and folding J.Mol.Biol., 361, 2006
102D	SEQUENCE-DEPENDENT DRUG BINDING TO THE MINOR GROOVE OF DNA: THE CRYSTAL STRUCTURE OF THE DNA DODECAMER D(CGCAAATTTGCG)2 COMPLEXED WITH PROPAMIDINE Descriptor: 1,3-BIS(AMIDINOPHENOXY)PROPANE, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3') Authors: Nunn, C.M, Neidle, S. Deposit date: 1994-12-15 Release date: 1995-02-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Sequence-dependent drug binding to the minor groove of DNA: crystal structure of the DNA dodecamer d(CGCAAATTTGCG)2 complexed with propamidine. J.Med.Chem., 38, 1995
4EBD	Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota Descriptor: 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', CALCIUM ION, ... Authors: Eoff, R.L, Ketkar, A, Banerjee, S. Deposit date: 2012-03-23 Release date: 2012-06-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.571 Å) Cite: A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota. J.Am.Chem.Soc., 134, 2012
4EDG	The structure of the S. aureus DnaG RNA Polymerase Domain bound to ATP and Manganese Descriptor: ADENOSINE-5'-TRIPHOSPHATE, BENZAMIDINE, DNA primase, ... Authors: Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-27 Release date: 2012-07-25 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.003 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
6OWN	Crystal structure of Msm DnaB1 intein splicing domain bound with zinc Descriptor: Replicative DNA helicase, ZINC ION Authors: Bacot-Davis, V.R, Belfort, M, Lennon, C. Deposit date: 2019-05-10 Release date: 2020-05-13 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Conditional DnaB Protein Splicing Is Reversibly Inhibited by Zinc in Mycobacteria. Mbio, 11, 2020
5TVP	SUMO2 bound to Mouse Tdp2 catalytic domain with a 5'-phosphorylated DNA ternary complex Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3'), ... Authors: Schellenberg, M.J, Williams, R.S. Deposit date: 2016-11-09 Release date: 2017-10-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.399 Å) Cite: ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links. Science, 357, 2017
2HPI	Eubacterial and Eukaryotic Replicative DNA Polymerases are not Homologous: X-ray Structure of DNA Polymerase III Descriptor: CHLORIDE ION, DNA polymerase III alpha subunit, MAGNESIUM ION, ... Authors: Bailey, S, Wing, R.A, Steitz, T.A. Deposit date: 2006-07-17 Release date: 2006-09-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: The Structure of T. aquaticus DNA Polymerase III Is Distinct from Eukaryotic Replicative DNA Polymerases. Cell(Cambridge,Mass.), 126, 2006
1EYG	Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS Descriptor: SINGLE STRANDED 28-MER OF D(C), SINGLE-STRAND DNA-BINDING PROTEIN Authors: Raghunathan, S, Waksman, G. Deposit date: 2000-05-06 Release date: 2000-08-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of the DNA binding domain of E. coli SSB bound to ssDNA. Nat.Struct.Biol., 7, 2000
4EDV	The structure of the S. aureus DnaG RNA Polymerase Domain bound to pppGpp and Manganese Descriptor: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ... Authors: Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-27 Release date: 2012-07-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EBC	Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota Descriptor: 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', CALCIUM ION, ... Authors: Eoff, R.L, Ketkar, A, Banerjee, S. Deposit date: 2012-03-23 Release date: 2012-06-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.901 Å) Cite: A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota. J.Am.Chem.Soc., 134, 2012
4EDT	The structure of the S. aureus DnaG RNA Polymerase Domain bound to ppGpp and Manganese Descriptor: BENZAMIDINE, DNA primase, GUANOSINE-5',3'-TETRAPHOSPHATE, ... Authors: Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-27 Release date: 2012-07-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.005 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EDR	The structure of the S. aureus DnaG RNA Polymerase Domain bound to UTP and Manganese Descriptor: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ... Authors: Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-27 Release date: 2012-07-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
1FIU	TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA Descriptor: ACETIC ACID, DNA (5'-D(*TP*GP*CP*G)-3'), DNA (5'-D(P*CP*CP*GP*GP*CP*GP*C)-3'), ... Authors: Deibert, M, Grazulis, S, Sasnauskas, G, Siksnys, V, Huber, R. Deposit date: 2000-08-07 Release date: 2001-02-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA. Nat.Struct.Biol., 7, 2000
6I1K	Crystal structure of catalytically inactive FnCas12a in complex with a crRNA guide and a dsDNA target Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas12a, DNA non-target strand (33-MER), ... Authors: Jinek, M, Swarts, D.C. Deposit date: 2018-10-29 Release date: 2019-01-23 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a. Mol. Cell, 73, 2019
8IFM	Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 Descriptor: MAGNESIUM ION, Piwi domain-containing protein, TIR domain-containing protein, ... Authors: Zhang, J.T, Jia, N. Deposit date: 2023-02-18 Release date: 2024-01-17 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system. Nat.Chem.Biol., 20, 2024
8IFL	Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1 Descriptor: MAGNESIUM ION, Piwi domain-containing protein, TIR domain-containing protein, ... Authors: Zhang, J.T, Jia, N. Deposit date: 2023-02-18 Release date: 2024-01-17 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system. Nat.Chem.Biol., 20, 2024
4E0P	Protelomerase tela covalently complexed with substrate DNA Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ... Authors: Shi, K, Aihara, H. Deposit date: 2012-03-05 Release date: 2013-02-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
4E0J	Protelomerase tela R255A mutant complexed with DNA hairpin product Descriptor: CHLORIDE ION, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*A)-3'), DNA (5'-D(*TP*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ... Authors: Shi, K, Aihara, H. Deposit date: 2012-03-04 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
7LMM	Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me2 Descriptor: DNA (cytosine-5)-methyltransferase 1,DNA (cytosine-5)-methyltransferase 1, Histone H4, ZINC ION Authors: Ren, W, Song, J. Deposit date: 2021-02-05 Release date: 2021-02-17 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.798 Å) Cite: DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation. Nat Commun, 12, 2021

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