Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2FI4
DownloadVisualize
BU of 2fi4 by Molmil
Crystal structure of a BPTI variant (Cys14->Ser) in complex with trypsin
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cationic trypsin, ...
Authors:Zakharova, E, Horvath, M.P, Goldenberg, D.P.
Deposit date:2005-12-27
Release date:2006-01-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Functional and structural roles of the Cys14-Cys38 disulfide of bovine pancreatic trypsin inhibitor.
J.Mol.Biol., 382, 2008
6MC0
DownloadVisualize
BU of 6mc0 by Molmil
Crystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila with Bound Substrate Ribose-5-Phosphate and Product Ribulose-5-Phosphate
Descriptor: RIBOSE-5-PHOSPHATE, RIBULOSE-5-PHOSPHATE, Ribose-5-phosphate isomerase A, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2018-08-30
Release date:2018-09-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila with Bound Substrate Ribose-5-Phosphate and Product Ribulose-5-Phosphate
to be published
2J9Y
DownloadVisualize
BU of 2j9y by Molmil
Tryptophan Synthase Q114N mutant in complex with Compound II
Descriptor: (3E)-4-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}-2-IMINOBUT-3-ENOIC ACID, SODIUM ION, TRYPTOPHAN SYNTHASE ALPHA CHAIN, ...
Authors:Blumenstein, L, Domratcheva, T, Niks, D, Ngo, H, Seidel, R, Dunn, M.F, Schlichting, I.
Deposit date:2006-11-16
Release date:2007-12-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Betaq114N and Betat110V Mutations Reveal a Critically Important Role of the Substrate Alpha-Carboxylate Site in the Reaction Specificity of Tryptophan Synthase.
Biochemistry, 46, 2007
2J9Z
DownloadVisualize
BU of 2j9z by Molmil
Tryptophan Synthase T110 mutant complex
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, TRYPTOPHAN SYNTHASE ALPHA CHAIN, ...
Authors:Blumenstein, L, Domratcheva, T, Niks, D, Ngo, H, Seidel, R, Dunn, M.F, Schlichting, I.
Deposit date:2006-11-16
Release date:2007-12-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Betaq114N and Betat110V Mutations Reveal a Critically Important Role of the Substrate Alpha-Carboxylate Site in the Reaction Specificity of Tryptophan Synthase.
Biochemistry, 46, 2007
6M0F
DownloadVisualize
BU of 6m0f by Molmil
X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) in substrate-free form
Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, Antibody fragment (9D5) Light chain, Antibody fragment (9D5) heavy chain, ...
Authors:Shabareesh, P, Mallela, A.K, Joseph, D, Penmatsa, A.
Deposit date:2020-02-21
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters.
Nat Commun, 12, 2021
6M3Z
DownloadVisualize
BU of 6m3z by Molmil
X-ray structure of a Drosophila dopamine transporter with NET-like mutations (D121G/S426M/F471L) in milnacipran bound form
Descriptor: (1R,2S)-2-(aminomethyl)-N,N-diethyl-1-phenyl-cyclopropane-1-carboxamide, Antibody fragment 9D5 Light chain, Antibody fragment 9D5 heavy chain, ...
Authors:Shabareesh, P, Mallela, A.K, Joseph, D, Penmatsa, A.
Deposit date:2020-03-04
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters.
Nat Commun, 12, 2021
6M47
DownloadVisualize
BU of 6m47 by Molmil
X-ray structure of a Drosophila dopamine transporter with NET-like mutations (D121G/S426M/F471L) in tramadol bound form
Descriptor: (1S,2S)-2-[(dimethylamino)methyl]-1-(3-methoxyphenyl)cyclohexan-1-ol, Antibody fragment 9D5 light chain, Antibody fragment Heavy chain, ...
Authors:Shabareesh, P, Mallela, A.K, Joseph, D, Penmatsa, A.
Deposit date:2020-03-05
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.252 Å)
Cite:Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters.
Nat Commun, 12, 2021
4CBC
DownloadVisualize
BU of 4cbc by Molmil
Open-form NavMS Sodium Channel Pore (with C-terminal Domain) after thallium soak
Descriptor: HEGA-10, ION TRANSPORT PROTEIN, SODIUM ION
Authors:Bagneris, C, Naylor, C.E, Wallace, B.A.
Deposit date:2013-10-12
Release date:2014-05-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.664 Å)
Cite:Prokaryotic Navms Channel as a Structural and Functional Model for Eukaryotic Sodium Channel Antagonism.
Proc.Natl.Acad.Sci.USA, 111, 2014
6KFN
DownloadVisualize
BU of 6kfn by Molmil
Crystal structure of alginate lyase from Paenibacillus sp. str. FPU-7
Descriptor: IMIDAZOLE, SODIUM ION, alginate lyase
Authors:Itoh, T, Nakagawa, E, Yoda, M, Nakaichi, A, Hibi, T, Kimoto, H.
Deposit date:2019-07-08
Release date:2019-10-30
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7.
Sci Rep, 9, 2019
3ZYV
DownloadVisualize
BU of 3zyv by Molmil
Crystal structure of the mouse liver Aldehyde Oxidase 3 (mAOX3)
Descriptor: AOX3, DIOXOTHIOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Trincao, J, Coelho, C, Mahro, M, Rodrigues, D, Terao, M, Garattini, E, Leimkuehler, S, Romao, M.J.
Deposit date:2011-08-27
Release date:2012-09-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.545 Å)
Cite:The First Mammalian Aldehyde Oxidase Crystal Structure: Insights Into Substrate Specificity.
J.Biol.Chem., 287, 2012
3FIU
DownloadVisualize
BU of 3fiu by Molmil
Structure of NMN synthetase from Francisella tularensis
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, NH(3)-dependent NAD(+) synthetase, ...
Authors:Sorci, L, Martynowski, D, Eyobo, Y, Osterman, A.L, Zhang, H.
Deposit date:2008-12-12
Release date:2009-03-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Nicotinamide mononucleotide synthetase is the key enzyme for an alternative route of NAD biosynthesis in Francisella tularensis
Proc.Natl.Acad.Sci.USA, 106, 2009
2YEQ
DownloadVisualize
BU of 2yeq by Molmil
Structure of PhoD
Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ALKALINE PHOSPHATASE D, ...
Authors:Lillington, J.E.D, Rodriguez, F, Roversi, P, Johnson, S.J, Berks, B, Lea, S.M.
Deposit date:2011-03-30
Release date:2012-04-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal Structure of the Bacillus Subtilis Phosphodiesterase Phod Reveals an Iron and Calcium-Containing Active Site.
J.Biol.Chem., 289, 2014
4HMM
DownloadVisualize
BU of 4hmm by Molmil
Crystal structure of mutant rabbit PRP 121-230 (S174N)
Descriptor: CHLORIDE ION, GLYCEROL, Major prion protein, ...
Authors:Sweeting, B, Chakrabartty, A, Pai, E.F.
Deposit date:2012-10-18
Release date:2013-05-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:N-Terminal Helix-Cap in alpha-Helix 2 Modulates beta-State Misfolding in Rabbit and Hamster Prion Proteins.
Plos One, 8, 2013
4FW6
DownloadVisualize
BU of 4fw6 by Molmil
Crystal Structure of the LpxC in complex with N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]-4-(PHENYLETHYNYL)BENZAMIDE inhibitor
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Kang, Y.N, Stuckey, J.A.
Deposit date:2012-06-29
Release date:2013-05-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal Structure of the LpxC
to be published
2FI3
DownloadVisualize
BU of 2fi3 by Molmil
Crystal structure of a BPTI variant (Cys14->Ser, Cys38->Ser) in complex with trypsin
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cationic trypsin, ...
Authors:Zakharova, E, Horvath, M.P, Goldenberg, D.P.
Deposit date:2005-12-27
Release date:2006-01-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Functional and structural roles of the Cys14-Cys38 disulfide of bovine pancreatic trypsin inhibitor.
J.Mol.Biol., 382, 2008
4ET9
DownloadVisualize
BU of 4et9 by Molmil
Hen egg-white lysozyme solved from 5 fs free-electron laser pulse data
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Boutet, S, Lomb, L, Williams, G, Barends, T, Aquila, A, Doak, R.B, Weierstall, U, DePonte, D, Steinbrener, J, Shoeman, R, Messerschmidt, M, Barty, A, White, T, Kassemeyer, S, Kirian, R, Seibert, M, Montanez, P, Kenney, C, Herbst, R, Hart, P, Pines, J, Haller, G, Gruner, S, Philllip, H, Tate, M, Hromalik, M, Koerner, L, van Bakel, N, Morse, J, Ghonsalves, W, Arnlund, D, Bogan, M, Calemann, C, Fromme, R, Hampton, C, Hunter, M, Johansson, L, Katona, G, Kupitz, C, Liang, M, Martin, A, Nass, K, Redecke, L, Stellato, F, Timneanu, N, Wang, D, Zatsepin, N, Schafer, D, Defever, K, Neutze, R, Fromme, P, Spence, J, Chapman, H, Schlichting, I.
Deposit date:2012-04-24
Release date:2012-06-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution protein structure determination by serial femtosecond crystallography.
Science, 337, 2012
6MP3
DownloadVisualize
BU of 6mp3 by Molmil
Binary structure of DNA polymerase eta in complex with templating hypoxanthine
Descriptor: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*IP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA polymerase eta, ...
Authors:Hawkins, M.A, Jung, H, Lee, S.
Deposit date:2018-10-05
Release date:2019-10-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.907 Å)
Cite:Structural Analysis of Translesion Synthesis Across Hypoxanthine Lesion Using Human DNA Polymerase Eta
To Be Published
2GC7
DownloadVisualize
BU of 2gc7 by Molmil
Substrate reduced, copper free complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans.
Descriptor: Amicyanin, Cytochrome c-L, HEME C, ...
Authors:Chen, Z, Durley, R, Davidson, V.L, Mathews, F.S.
Deposit date:2006-03-13
Release date:2007-02-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structral comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 A resolution.
To be Published
4HX0
DownloadVisualize
BU of 4hx0 by Molmil
Crystal structure of a putative nucleotidyltransferase (TM1012) from Thermotoga maritima at 1.87 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,4-BUTANEDIOL, Putative nucleotidyltransferase TM1012, ...
Authors:Boyko, K.M, Gorbacheva, M.A, Korzhenevskiy, D.A, Lipkin, A.V, Popov, V.O, Kovalchuk, M.V, Shumilin, I.A, Minor, W, Shabalin, I.G, Golubev, A.M.
Deposit date:2012-11-09
Release date:2013-09-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of putative nucleotidyltransferase with two MPD molecules in the active site.
To be Published
1IVB
DownloadVisualize
BU of 1ivb by Molmil
STRUCTURES OF AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(ACETYLAMINO)-3-HYDROXY-5-NITROBENZOIC ACID, CALCIUM ION, ...
Authors:Jedrzejas, M.J, Luo, M.
Deposit date:1994-12-12
Release date:1995-03-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of aromatic inhibitors of influenza virus neuraminidase.
Biochemistry, 34, 1995
6MOZ
DownloadVisualize
BU of 6moz by Molmil
Structure of acid-beta-glucosidase in complex with an aromatic pyrrolidine iminosugar inhibitor
Descriptor: (2R,3S,4R)-2-{[4-(3,5-dichlorophenyl)-1H-1,2,3-triazol-1-yl]methyl}pyrrolidine-3,4-diol, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Patterson-Orazem, A.C, Lieberman, R.L.
Deposit date:2018-10-05
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Exploring substituent diversity on pyrrolidine-aryltriazole iminosugars: Structural basis of beta-glucocerebrosidase inhibition.
Bioorg.Chem., 86, 2019
4CCY
DownloadVisualize
BU of 4ccy by Molmil
Crystal structure of carboxylesterase CesB (YbfK) from Bacillus subtilis
Descriptor: CARBOXYLESTERASE YBFK, SODIUM ION
Authors:Rozeboom, H.J, Godinho, L.F, Nardini, M, Quax, W.J, Dijkstra, B.W.
Deposit date:2013-10-29
Release date:2014-01-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Crystal Structures of Two Bacillus Carboxylesterases with Different Enantioselectivities.
Biochim.Biophys.Acta, 1844, 2014
3IHV
DownloadVisualize
BU of 3ihv by Molmil
Crystal structure of SusD homolog (NP_813570.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SODIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-07-30
Release date:2009-08-11
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of SusD homolog (NP_813570.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution
To be Published
4HUS
DownloadVisualize
BU of 4hus by Molmil
Crystal structure of streptogramin group A antibiotic acetyltransferase VatA from Staphylococcus aureus in complex with virginiamycin M1
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Stogios, P.J, Minasov, G, Evdokimova, E, Wawrzak, Z, Yim, V, Krishnamoorthy, M, Di Leo, R, Courvalin, P, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-11-03
Release date:2012-11-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Potential for Reduction of Streptogramin A Resistance Revealed by Structural Analysis of Acetyltransferase VatA.
Antimicrob.Agents Chemother., 58, 2014
6N6K
DownloadVisualize
BU of 6n6k by Molmil
Human REXO2 bound to pAG
Descriptor: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.418 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019

223532

数据于2024-08-07公开中

PDB statisticsPDBj update infoContact PDBjnumon