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8XD5	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCQ	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCO	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the initial stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCS	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH, AKG and NH4 in the initial stage of reaction Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCU	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH, AKG and GLU in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCY	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD2	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD3	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCP	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCT	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCZ	Cryo-EM structure of glutamate dehydrogenase from thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD6	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH, AKG and NH4 in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.79 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8DR0	Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction Descriptor: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.42 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DQZ	Intermediate state of RFC:PCNA bound to a 3' ss/dsDNA junction Descriptor: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DQX	Open state of RFC:PCNA bound to a 3' ss/dsDNA junction Descriptor: DNA (5'-D(*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*CP*CP*GP*AP*GP*CP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*GP*CP*CP*CP*GP*GP*A)-3'), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DR6	Closed state of RFC:PCNA bound to a nicked dsDNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (32-MER), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.39 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8BHF	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S11, ... Authors: Absmeier, E, Chandrasekaran, V, O'Reilly, F.J, Stowell, J.A.W, Rappsilber, J, Passmore, L.A. Deposit date: 2022-10-31 Release date: 2023-09-06 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Modulation of GluA2-gamma 5 synaptic complex desensitization, polyamine block and antiepileptic perampanel inhibition by auxiliary subunit cornichon-2. Nat.Struct.Mol.Biol., 30, 2023
7LGU	Structure of human prestin in the presence of NaCl Descriptor: CHLORIDE ION, CHOLESTEROL, DECANE, ... Authors: Ge, J, Gouaux, E. Deposit date: 2021-01-21 Release date: 2021-08-25 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Molecular mechanism of prestin electromotive signal amplification. Cell, 184, 2021
7LGW	Structure of human Prestin in nanodisc in the presence of NaCl Descriptor: CHLORIDE ION, CHOLESTEROL, DECANE, ... Authors: Ge, J, Gouaux, E. Deposit date: 2021-01-21 Release date: 2021-08-25 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Molecular mechanism of prestin electromotive signal amplification. Cell, 184, 2021
7LH3	Structure of human prestin in the presence of sodium sulfate Descriptor: Prestin Authors: Ge, J, Gouaux, E. Deposit date: 2021-01-21 Release date: 2021-08-25 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Molecular mechanism of prestin electromotive signal amplification. Cell, 184, 2021
7LH2	Structure of human prestin in the presence of sodium salicylate and sodium sulfate Descriptor: 2-HYDROXYBENZOIC ACID, CHOLESTEROL, Prestin Authors: Ge, J, Gouaux, E. Deposit date: 2021-01-21 Release date: 2021-08-25 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.43 Å) Cite: Molecular mechanism of prestin electromotive signal amplification. Cell, 184, 2021
7TVE	ATP and DNA bound SMC5/6 core complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (68-MER), DNA (78-MER), ... Authors: Yu, Y, Patel, D.J. Deposit date: 2022-02-04 Release date: 2022-06-22 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Cryo-EM structure of DNA-bound Smc5/6 reveals DNA clamping enabled by multi-subunit conformational changes. Proc.Natl.Acad.Sci.USA, 119, 2022
9FTW	Crystal structure of calcium-activated EndoU Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... Authors: Fribourg, S, Campagne, S. Deposit date: 2024-06-25 Release date: 2024-08-14 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Molecular Basis for the Calcium-Dependent Activation of the Ribonuclease EndoU. Res Sq, 2024
8A2Q	Structure of the DNA-bound FANCD2-FANCI complex containing phosphomimetic FANCI Descriptor: DNA (29-MER), FANCD2, Fanconi anemia complementation group I Authors: Passmore, L.A, Sijacki, T, Alcon, P. Deposit date: 2022-06-06 Release date: 2022-09-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.53 Å) Cite: The DNA-damage kinase ATR activates the FANCD2-FANCI clamp by priming it for ubiquitination. Nat.Struct.Mol.Biol., 29, 2022
6IRJ	Crystal structure of lysozyme by fixed-target serial femtosecond crystallography Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION Authors: Nam, K.H. Deposit date: 2018-11-13 Release date: 2019-05-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Nylon mesh-based sample holder for fixed-target serial femtosecond crystallography. Sci Rep, 9, 2019

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