PDB: 41454 resultsInfo pagesStatus searchChemie searchBIRD

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1OQD	Crystal structure of sTALL-1 and BCMA Descriptor: Tumor necrosis factor ligand superfamily member 13B, soluble form, Tumor necrosis factor receptor superfamily member 17 Authors: Zhang, G. Deposit date: 2003-03-07 Release date: 2003-05-13 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Ligand-receptor binding revealed by the TNF family member TALL-1. Nature, 423, 2003
8TPJ	Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement) Descriptor: Allophycocyanin alpha chain, Allophycocyanin beta chain, Orange carotenoid-binding protein, ... Authors: Sauer, P.V, Sutter, M, Cupellini, L. Deposit date: 2023-08-04 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes. Sci Adv, 10, 2024
5L50	Crystal structure of enzyme in purine metabolism Descriptor: Cytosolic purine 5'-nucleotidase, GLYCEROL Authors: Hnizda, A, Pachl, P, Rezacova, P. Deposit date: 2016-05-27 Release date: 2016-09-21 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.643 Å) Cite: Oligomeric interface modulation causes misregulation of purine 5 -nucleotidase in relapsed leukemia. Bmc Biol., 14, 2016
8HRG	Tail tube of DT57C bacteriophage in the full state Descriptor: Tail tube protein Authors: Ayala, R, Moiseenko, A.V, Chen, T.H, Kulikov, E.E, Golomidova, A.K, Orekhov, P.S, Street, M.A, Sokolova, O.S, Letarov, A.V, Wolf, M. Deposit date: 2022-12-15 Release date: 2023-12-13 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Nearly complete structure of bacteriophage DT57C reveals architecture of head-to-tail interface and lateral tail fibers. Nat Commun, 14, 2023
8HRE	Straight fiber of DT57C bacteriophage in the full state Descriptor: Central straight fiber Authors: Ayala, R, Moiseenko, A.V, Chen, T.H, Kulikov, E.E, Golomidova, A.K, Orekhov, P.S, Street, M.A, Sokolova, O.S, Letarov, A.V, Wolf, M. Deposit date: 2022-12-15 Release date: 2023-12-13 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (5.5 Å) Cite: Nearly complete structure of bacteriophage DT57C reveals architecture of head-to-tail interface and lateral tail fibers. Nat Commun, 14, 2023
8HQK	Capsid of DT57C bacteriophage in the empty state Descriptor: Major head protein Authors: Ayala, R, Moiseenko, A.V, Kulikov, E.E, Golomidova, A.K, Orekhov, P.S, Street, M.A, Sokolova, O.S, Letarov, A.V, Wolf, M. Deposit date: 2022-12-13 Release date: 2023-12-13 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Nearly complete structure of bacteriophage DT57C reveals architecture of head-to-tail interface and lateral tail fibers. Nat Commun, 14, 2023
8HQZ	Baseplate of DT57C bacteriophage in the full state Descriptor: Baseplate hub protein, Distal tail protein, L-shaped tail fiber assembly, ... Authors: Ayala, R, Moiseenko, A.V, Chen, T.H, Kulikov, E.E, Golomidova, A.K, Orekhov, P.S, Street, M.A, Sokolova, O.S, Letarov, A.V, Wolf, M. Deposit date: 2022-12-14 Release date: 2023-12-13 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Nearly complete structure of bacteriophage DT57C reveals architecture of head-to-tail interface and lateral tail fibers. Nat Commun, 14, 2023
8HO3	Capsid of DT57C bacteriophage in the full state Descriptor: Major head protein Authors: Ayala, R, Moiseenko, A.V, Chen, T.H, Kulikov, E.E, Golomidova, A.K, Orekhov, P.S, Street, M.A, Sokolova, O.S, Letarov, A.V, Wolf, M. Deposit date: 2022-12-09 Release date: 2023-12-13 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Nearly complete structure of bacteriophage DT57C reveals architecture of head-to-tail interface and lateral tail fibers. Nat Commun, 14, 2023
8HQO	Neck of DT57C bacteriophage in the full state Descriptor: Head completion protein, Portal protein, Tail terminator protein, ... Authors: Ayala, R, Moiseenko, A.V, Chen, T.H, Kulikov, E.E, Golomidova, A.K, Orekhov, P.S, Street, M.A, Sokolova, O.S, Letarov, A.V, Wolf, M. Deposit date: 2022-12-13 Release date: 2023-12-13 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Nearly complete structure of bacteriophage DT57C reveals architecture of head-to-tail interface and lateral tail fibers. Nat Commun, 14, 2023
5MPV	Crystal structure of a Mycobacterium tuberculosis chorismate mutase optimized for high autonomous activity by directed evolution Descriptor: Intracellular chorismate mutase Authors: Thorbjornsrud, H.V, Kamarauskaite, J, Kast, P, Krengel, U. Deposit date: 2016-12-19 Release date: 2018-08-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Evolving the naturally compromised chorismate mutase from Mycobacterium tuberculosis to top performance. J.Biol.Chem., 295, 2020
7JMU	Hen egg-white lysozyme with ionic liquid ethylammonium nitrate Descriptor: Lysozyme C, NITRATE ION Authors: Han, Q, Darmanin, C, Smith, K, Greaves, T, Drummond, C. Deposit date: 2020-08-02 Release date: 2020-11-11 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Lysozyme conformational changes with ionic liquids: Spectroscopic, small angle x-ray scattering and crystallographic study. J Colloid Interface Sci, 585, 2021
6M63	Crystal structure of a cAMP sensor G-Flamp1. Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Chimera of Cyclic nucleotide-gated potassium channel mll3241 and Yellow fluorescent protein Authors: Zhou, Z, Chen, S, Wang, L, Chu, J. Deposit date: 2020-03-12 Release date: 2021-09-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.25 Å) Cite: A high-performance genetically encoded fluorescent indicator for in vivo cAMP imaging. Nat Commun, 13, 2022
5MYC	Crystal structure of human 14-3-3 sigma in complex with LRRK2 peptide pS910 Descriptor: 14-3-3 protein sigma, CALCIUM ION, CHLORIDE ION, ... Authors: Stevers, L.M, de Vries, R.M.J.M, Ottmann, C. Deposit date: 2017-01-26 Release date: 2017-03-01 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.459 Å) Cite: Structural interface between LRRK2 and 14-3-3 protein. Biochem. J., 474, 2017
8IP9	Wheat 40S ribosome in complex with a tRNAi Descriptor: 18S ribosomal RNA, 40S ribosomal protein S23, 40S ribosomal protein eS1, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
8IPB	Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Descriptor: 18S ribosomal RNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, 40S ribosomal protein eL8, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
8IPA	Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Descriptor: 18S ribosomal RNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, 40S ribosomal protein eL8, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
8TRO	Rod from high-resolution phycobilisome quenched by OCP (local refinement) Descriptor: C-phycocyanin alpha subunit, C-phycocyanin beta subunit, PHYCOCYANOBILIN, ... Authors: Sauer, P.V, Sutter, M, Cupellini, L. Deposit date: 2023-08-09 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (1.9 Å) Cite: Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes. Sci Adv, 10, 2024
7JWB	SARS CoV2 Spike ectodomain with engineered trimerized VH binder Descriptor: Spike glycoprotein, autonomous human heavy chain variable domain Authors: QCRG Structural Biology Consortium Deposit date: 2020-08-25 Release date: 2020-10-07 Last modified: 2020-12-30 Method: ELECTRON MICROSCOPY (6 Å) Cite: Bi-paratopic and multivalent VH domains block ACE2 binding and neutralize SARS-CoV-2. Nat.Chem.Biol., 17, 2021
5MY9	Crystal structure of human 14-3-3 sigma in complex with LRRK2 peptide pS935 Descriptor: 14-3-3 protein sigma, CALCIUM ION, CHLORIDE ION, ... Authors: Stevers, L.M, de Vries, R.M.J.M, Ottmann, C. Deposit date: 2017-01-26 Release date: 2017-03-01 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.327 Å) Cite: Structural interface between LRRK2 and 14-3-3 protein. Biochem. J., 474, 2017
5GIT	BTB domain of KEAP1 in complex with XX3 Descriptor: Kelch-like ECH-associated protein 1, [(3aS,5R,5aS,6S,8S,8aS,9S,9aR)-9-acetyloxy-8-hydroxy-5,8a-dimethyl-1-methylidene-2-oxo-4,5,5a,6,7,8,9,9a-octahydro-3aH-azuleno[6,5-b]furan-6-yl] acetate Authors: Zhu, L.L, Li, H.L, Wu, F.S, Xiong, R. Deposit date: 2016-06-25 Release date: 2017-06-28 Last modified: 2019-01-23 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Britanin Ameliorates Cerebral Ischemia-Reperfusion Injury by Inducing the Nrf2 Protective Pathway. Antioxid. Redox Signal., 27, 2017
5LSH	human lysozyme in complex with a tetrasaccharide fragment of the O-chain of LPS from Klebsiella pneumoniae Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ... Authors: Zhang, R, Nifantiev, N.E, Krylov, V, Luetteke, T, Scheidig, A.J, Siebert, H.-C. Deposit date: 2016-08-26 Release date: 2017-06-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.061 Å) Cite: Lysozyme's lectin-like characteristics facilitates its immune defense function. Q. Rev. Biophys., 50, 2017
7O9K	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... Authors: Valentin Gese, G, Hallberg, B.M. Deposit date: 2021-04-16 Release date: 2021-06-30 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for late maturation steps of the human mitoribosomal large subunit. Nat Commun, 12, 2021
7O9M	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... Authors: Valentin Gese, G, Hallberg, B.M. Deposit date: 2021-04-16 Release date: 2021-06-30 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structural basis for late maturation steps of the human mitoribosomal large subunit. Nat Commun, 12, 2021
7RW4	Crystal structure of junctophilin-1 Descriptor: ACETATE ION, GLYCEROL, Junctophilin-1 Authors: Yang, Z, Panwar, P, Van Petegem, F. Deposit date: 2021-08-19 Release date: 2022-02-23 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.31 Å) Cite: Structures of the junctophilin/voltage-gated calcium channel interface reveal hot spot for cardiomyopathy mutations. Proc.Natl.Acad.Sci.USA, 119, 2022
7RXE	Crystal structure of junctophilin-2 Descriptor: CITRATE ANION, ISOPROPYL ALCOHOL, Junctophilin-2 N-terminal fragment Authors: Yang, Z, Panwar, P, Van Petegem, F. Deposit date: 2021-08-22 Release date: 2022-02-23 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structures of the junctophilin/voltage-gated calcium channel interface reveal hot spot for cardiomyopathy mutations. Proc.Natl.Acad.Sci.USA, 119, 2022

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