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2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins Descriptor: Ubiquitin Authors: Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. Deposit date: 2006-11-01 Release date: 2007-05-08 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007
2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag Descriptor: TERBIUM(III) ION, Ubiquitin Authors: Silvaggi, N.R, Allen, K.N. Deposit date: 2007-01-13 Release date: 2007-06-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin Authors: Eddins, M.J, Wolberger, C. Deposit date: 2006-12-08 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
2N7K	Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 Descriptor: NEDD8, Protein KHNYN Authors: Santonico, E, Nepravishta, R, Mattioni, A, Valentini, E, Mandaliti, W, Procopio, R, Iannuccelli, M, Castagnoli, L, Polo, S, Paci, M, Cesareni, G. Deposit date: 2015-09-14 Release date: 2016-09-14 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 To be Published
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase CBL-B, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-01-25 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2MWS	Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1 Descriptor: DNA damage-inducible protein 1, Ubiquitin Authors: Fushman, D, Nowicka, U, Walker, O. Deposit date: 2014-11-23 Release date: 2015-03-25 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin. Structure, 23, 2015
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2NBD	Solution structure of V26A mutant of Ubiquitin at pH 6.0 Descriptor: entity Authors: Surana, P, Das, R. Deposit date: 2016-02-04 Release date: 2016-05-18 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2NBU	Solution structure of the Rad23 ubiquitin-like (UBL) domain Descriptor: UV excision repair protein RAD23 Authors: Chen, X, Walters, K.J. Deposit date: 2016-03-12 Release date: 2016-07-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2NBE	Solution structure of V26A mutant of Ubiquitin at pH 2.0 Descriptor: entity Authors: Surana, P, Das, R. Deposit date: 2016-02-04 Release date: 2016-05-18 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2L3Z	Proton-Detected 4D DREAM Solid-State NMR Structure of Ubiquitin Descriptor: Ubiquitin Authors: Huber, M, Hiller, S, Schanda, P, Ernst, M, Bockmann, A, Verel, R, Meier, B.H. Deposit date: 2010-09-27 Release date: 2011-02-16 Last modified: 2024-05-01 Method: SOLID-STATE NMR Cite: A Proton-Detected 4D Solid-State NMR Experiment for Protein Structure Determination. Chemphyschem, 12, 2011
2LD9	Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and N-C RDCs Descriptor: Ubiquitin Authors: Kumar, D, Hosur, R. Deposit date: 2011-05-18 Release date: 2011-06-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: AUTOBA: Automation of Backbone Assignment from HN(C)N Suite of Experiments To be Published
2MI8	Solution structure of lysine-free (K0) ubiquitin Descriptor: Ubiquitin Authors: Huang, T, Li, J.R, Byrd, A.R. Deposit date: 2013-12-09 Release date: 2014-04-02 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of lysine-free (K0) ubiquitin. Protein Sci., 23, 2014
2N2K	Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand Descriptor: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ubiquitin Authors: Liu, Z, Gong, Z, Tang, C. Deposit date: 2015-05-10 Release date: 2015-07-08 Last modified: 2015-09-23 Method: SOLUTION NMR Cite: Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition. Elife, 4, 2015
2MBO	K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2013-08-02 Release date: 2013-09-04 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains. Structure, 21, 2013
2MBQ	K11-linked Diubiquitin average solution structure at pH 6.8, 150 mM NaCl Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2013-08-03 Release date: 2013-09-04 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains. Structure, 21, 2013
2MJB	Solution nmr structure of ubiquitin refined against dipolar couplings in 4 media Descriptor: Ubiquitin-60S ribosomal protein L40 Authors: Maltsev, A, Grishaev, A, Roche, J, Zasloff, M, Bax, A. Deposit date: 2014-01-02 Release date: 2014-03-26 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Improved cross validation of a static ubiquitin structure derived from high precision residual dipolar couplings measured in a drug-based liquid crystalline phase. J.Am.Chem.Soc., 136, 2014
8CMR	Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin Descriptor: OTU domain-containing protein, Polyubiquitin-B Authors: Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U. Deposit date: 2023-02-21 Release date: 2023-11-22 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nat Commun, 14, 2023
8T48	The N4BP1 CUE-like domain in complex with linear di-Ubiquitin Descriptor: Di-Ubiquitin, GLYCEROL, LITHIUM ION, ... Authors: Schubert, A.F, Harris, S.F. Deposit date: 2023-06-08 Release date: 2024-03-13 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2 Å) Cite: N4BP1 coordinates ubiquitin-dependent crosstalk within the I kappa B kinase family to limit Toll-like receptor signaling and inflammation. Immunity, 57, 2024
4W9I	pVHL:EloB:EloC in complex with (2S,4R)-1-((2S,4R)-1-acetyl-4-hydroxypyrrolidine-2-carbonyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 10) Descriptor: (4R)-1-acetyl-4-hydroxy-L-prolyl-(4R)-4-hydroxy-N-[4-(4-methyl-1,3-thiazol-5-yl)benzyl]-L-prolinamide, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, ... Authors: Gadd, M.S, Soares, P, Galdeano, C, van Molle, I, Ciulli, A. Deposit date: 2014-08-27 Release date: 2014-09-10 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure-Guided Design and Optimization of Small Molecules Targeting the Protein-Protein Interaction between the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase and the Hypoxia Inducible Factor (HIF) Alpha Subunit with in Vitro Nanomolar Affinities. J.Med.Chem., 57, 2014
3TBL	Structure of Mono-ubiquitinated PCNA: Implications for DNA Polymerase Switching and Okazaki Fragment Maturation Descriptor: Proliferating cell nuclear antigen, Ubiquitin Authors: Zhang, Z, Lee, M, Lee, E, Zhang, S. Deposit date: 2011-08-07 Release date: 2012-05-23 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.903 Å) Cite: Structure of monoubiquitinated PCNA: Implications for DNA polymerase switching and Okazaki fragment maturation. Cell Cycle, 11, 2012
2QHO	Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase EDD1, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-07-02 Release date: 2007-09-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural basis of ubiquitin recognition by the ubiquitin-associated (UBA) domain of the ubiquitin ligase EDD. J.Biol.Chem., 282, 2007
3L0W	Structure of split monoubiquitinated PCNA with ubiquitin in position two Descriptor: Monoubiquitinated Proliferating cell nuclear antigen, Proliferating cell nuclear antigen Authors: Freudenthal, B.D, Gakhar, L, Ramaswamy, S, Washington, M.T. Deposit date: 2009-12-10 Release date: 2010-03-23 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange. Nat.Struct.Mol.Biol., 17, 2010
3L10	Structure of split monoubiquitinated PCNA with ubiquitin in position one Descriptor: Monoubiquitinated Proliferating cell nuclear antigen, Proliferating cell nuclear antigen Authors: Freudenthal, B.D, Gakhar, L, Ramaswamy, S, Washington, M.T. Deposit date: 2009-12-10 Release date: 2010-03-23 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange. Nat.Struct.Mol.Biol., 17, 2010

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