Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8GHS
DownloadVisualize
BU of 8ghs by Molmil
Empty HBV Cp183 capsid with importin-beta, subparticle reconstruction at 2-fold location
Descriptor: Capsid protein
Authors:Kim, C, Schlicksup, C.J, Hadden-Perilla, J.A, Wang, J.C.-Y, Zlotnick, A.
Deposit date:2023-03-10
Release date:2023-08-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of the Hepatitis B virus capsid quasi-6-fold with a trapped C-terminal domain reveals capsid movements associated with domain exit.
J.Biol.Chem., 299, 2023
8G3K
DownloadVisualize
BU of 8g3k by Molmil
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Descriptor: Cob_adeno_trans domain-containing protein, Cryo-EM imaging scaffold subunit B with DARPin - RCG-33
Authors:Castells-Graells, R, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-02-08
Release date:2023-08-09
Last modified:2023-09-27
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Cryo-EM structure determination of small therapeutic protein targets at 3 angstrom -resolution using a rigid imaging scaffold.
Proc.Natl.Acad.Sci.USA, 120, 2023
6QSQ
DownloadVisualize
BU of 6qsq by Molmil
X-ray crystal structure of the R336L Vibrio alkaline phosphatase variant.
Descriptor: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID, Alkaline phosphatase, MAGNESIUM ION, ...
Authors:Hjorleifsson, J.G, Helland, R, Asgeirsson, B.
Deposit date:2019-02-21
Release date:2020-01-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:The high catalytic rate of the cold-active Vibrio alkaline phosphatase requires a hydrogen bonding network involving a large interface loop.
Febs Open Bio, 2020
2BZ2
DownloadVisualize
BU of 2bz2 by Molmil
Solution structure of NELF E RRM
Descriptor: NEGATIVE ELONGATION FACTOR E
Authors:Schweimer, K, Rao, J.N, Neumann, L, Rosch, P, Wohrl, B.M.
Deposit date:2005-08-10
Release date:2006-08-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural studies on the RNA-recognition motif of NELF E, a cellular negative transcription elongation factor involved in the regulation of HIV transcription.
Biochem. J., 400, 2006
8G5U
DownloadVisualize
BU of 8g5u by Molmil
Crystal structure of TnmK2 complexed with TNM B
Descriptor: TnmK2, methyl (2E)-3-[(1aS,11S,11aS,14Z,18R)-3,18-dihydroxy-4,9-dioxo-4,9,10,11-tetrahydro-11aH-11,1a-hept[3]ene[1,5]diynonaphtho[2,3-h]oxireno[c]quinolin-11a-yl]but-2-enoate
Authors:Liu, Y.-C, Gui, C, Shen, B.
Deposit date:2023-02-14
Release date:2023-10-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.804 Å)
Cite:Cofactorless oxygenases guide anthraquinone-fused enediyne biosynthesis.
Nat.Chem.Biol., 20, 2024
1DBV
DownloadVisualize
BU of 1dbv by Molmil
GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH ASP 32 REPLACED BY GLY, LEU 187 REPLACED BY ALA, AND PRO 188 REPLACED BY SER COMPLEXED WITH NAD+
Descriptor: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Didierjean, C, Rahuel-Clermont, S, Vitoux, B, Dideberg, O, Branlant, G, Aubry, A.
Deposit date:1996-12-20
Release date:1997-07-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A crystallographic comparison between mutated glyceraldehyde-3-phosphate dehydrogenases from Bacillus stearothermophilus complexed with either NAD+ or NADP+.
J.Mol.Biol., 268, 1997
8FCX
DownloadVisualize
BU of 8fcx by Molmil
Cryo-EM structure of TnsC oligomer in type I-B CAST system
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, TnsC
Authors:Chang, L, Wang, S.
Deposit date:2022-12-01
Release date:2023-08-09
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Molecular mechanism for Tn7-like transposon recruitment by a type I-B CRISPR effector.
Cell, 186, 2023
8IGC
DownloadVisualize
BU of 8igc by Molmil
Crystal structure of Bak bound to Bnip5 BH3
Descriptor: Bcl-2 homologous antagonist/killer, Protein BNIP5
Authors:Ku, B, Lim, D.
Deposit date:2023-02-20
Release date:2023-09-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:Crystal structure of Bak bound to the BH3 domain of Bnip5, a noncanonical BH3 domain-containing protein.
Proteins, 92, 2024
2B7T
DownloadVisualize
BU of 2b7t by Molmil
Structure of ADAR2 dsRBM1
Descriptor: Double-stranded RNA-specific editase 1
Authors:Stefl, R, Xu, M, Skrisovska, L, Emeson, R.B, Allain, F.H.-T.
Deposit date:2005-10-05
Release date:2006-03-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs.
Structure, 14, 2006
2B7V
DownloadVisualize
BU of 2b7v by Molmil
Structure of ADAR2 dsRBM2
Descriptor: Double-stranded RNA-specific editase 1
Authors:Stefl, R, Xu, M, Skrisovska, L, Emeson, R.B, Allain, F.H.-T.
Deposit date:2005-10-05
Release date:2006-03-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs.
Structure, 14, 2006
6TPG
DownloadVisualize
BU of 6tpg by Molmil
Crystal structure of the Orexin-2 receptor in complex with EMPA at 2.74 A resolution
Descriptor: N-ethyl-2-[(6-methoxypyridin-3-yl)-(2-methylphenyl)sulfonyl-amino]-N-(pyridin-3-ylmethyl)ethanamide, OLEIC ACID, Orexin receptor type 2,GlgA glycogen synthase,Hypocretin receptor-2, ...
Authors:Rappas, M, Ali, A, Bennett, K.A, Brown, J.D, Bucknell, S.J, Congreve, M, Cooke, R.M, Cseke, G, de Graaf, C, Dore, A.S, Errey, J.C, Jazayeri, A, Marshall, F.H, Mason, J.S, Mould, R, Patel, J.C, Tehan, B.G, Weir, M, Christopher, J.A.
Deposit date:2019-12-13
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.741 Å)
Cite:Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.
J.Med.Chem., 63, 2020
6W5G
DownloadVisualize
BU of 6w5g by Molmil
Class D beta-lactamase BAT-2
Descriptor: 1,2-ETHANEDIOL, BAT-2 beta-lactamase
Authors:Smith, C.A, Vakulenko, S.B, Stewart, N.K, Toth, M.
Deposit date:2020-03-13
Release date:2020-06-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.451 Å)
Cite:A surface loop modulates activity of the Bacillus class D beta-lactamases.
J.Struct.Biol., 211, 2020
6TPN
DownloadVisualize
BU of 6tpn by Molmil
Crystal structure of the Orexin-2 receptor in complex with HTL6641 at 2.61 A resolution
Descriptor: 2-(5,6-dimethoxypyridin-3-yl)-1,1-bis(oxidanylidene)-4-[[2,4,6-tris(fluoranyl)phenyl]methyl]pyrido[2,3-e][1,2,4]thiadiazin-3-one, NITRATE ION, OLEIC ACID, ...
Authors:Rappas, M, Ali, A, Bennett, K.A, Brown, J.D, Bucknell, S.J, Congreve, M, Cooke, R.M, Cseke, G, de Graaf, C, Dore, A.S, Errey, J.C, Jazayeri, A, Marshall, F.H, Mason, J.S, Mould, R, Patel, J.C, Tehan, B.G, Weir, M, Christopher, J.A.
Deposit date:2019-12-13
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.608 Å)
Cite:Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.
J.Med.Chem., 63, 2020
6TQO
DownloadVisualize
BU of 6tqo by Molmil
rrn anti-termination complex
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S4, DNA-directed RNA polymerase subunit alpha, ...
Authors:Huang, Y.H, Wahl, M.C, Loll, B, Hilal, T, Said, N.
Deposit date:2019-12-17
Release date:2020-08-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure-Based Mechanisms of a Molecular RNA Polymerase/Chaperone Machine Required for Ribosome Biosynthesis.
Mol.Cell, 79, 2020
7SZQ
DownloadVisualize
BU of 7szq by Molmil
Human P300 complexed with an azaindazole inhibitor
Descriptor: 1-[1-(4-chlorophenyl)cyclopentane-1-carbonyl]-N-1H-pyrazolo[4,3-b]pyridin-5-yl-D-prolinamide, Histone acetyltransferase p300
Authors:Shewchuk, L.M, Reid, R.A.
Deposit date:2021-11-29
Release date:2022-11-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Discovery of Proline-Based p300/CBP Inhibitors Using DNA-Encoded Library Technology in Combination with High-Throughput Screening.
J.Med.Chem., 65, 2022
8PSS
DownloadVisualize
BU of 8pss by Molmil
Tilapia Lake Virus polymerase in cRNA pre-initiation state mode B (core-endo only)
Descriptor: 5' cRNA end - cRNA loop (40-mer), MAGNESIUM ION, Polymerase acidic protein (PA-like), ...
Authors:Arragain, B, Cusack, S.
Deposit date:2023-07-13
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family.
Nat Commun, 14, 2023
8PT2
DownloadVisualize
BU of 8pt2 by Molmil
Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (transcriptase conformation)
Descriptor: 5' vRNA end - vRNA loop (40-mer), Polymerase acidic protein (PA-like), Putative PB1, ...
Authors:Arragain, B, Cusack, S.
Deposit date:2023-07-13
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family.
Nat Commun, 14, 2023
8PTJ
DownloadVisualize
BU of 8ptj by Molmil
Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (close core | partial replicase conformation)
Descriptor: 3' vRNA end - vRNA loop (40-mer), Polymerase acidic protein (PA-like), Putative PB1, ...
Authors:Arragain, B, Cusack, S.
Deposit date:2023-07-14
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family.
Nat Commun, 14, 2023
8PTH
DownloadVisualize
BU of 8pth by Molmil
Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (open core | partial replicase conformation)
Descriptor: 3' vRNA end - vRNA loop (40-mer), Polymerase acidic protein (PA-like), Putative PB1, ...
Authors:Arragain, B, Cusack, S.
Deposit date:2023-07-14
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family.
Nat Commun, 14, 2023
7TD9
DownloadVisualize
BU of 7td9 by Molmil
G-059 bound to the SMARCA4 (BRG1) Bromodomain
Descriptor: 4-phenyl-5H-pyridazino[4,3-b]indol-3-amine, Isoform 4 of Transcription activator BRG1
Authors:Tang, Y, Poy, F, Taylor, A.M, Cochran, A.G, Bellon, S.F.
Deposit date:2021-12-30
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:GNE-064: A Potent, Selective, and Orally Bioavailable Chemical Probe for the Bromodomains of SMARCA2 and SMARCA4 and the Fifth Bromodomain of PBRM1.
J.Med.Chem., 65, 2022
8PSZ
DownloadVisualize
BU of 8psz by Molmil
Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation)
Descriptor: 5' vRNA end - vRNA loop (40-mer), MAGNESIUM ION, Polymerase acidic protein (PA-like), ...
Authors:Arragain, B, Cusack, S.
Deposit date:2023-07-13
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (2.42 Å)
Cite:Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family.
Nat Commun, 14, 2023
1CF9
DownloadVisualize
BU of 1cf9 by Molmil
Structure of the mutant VAL169CYS of catalase HPII from Escherichia coli
Descriptor: PROTEIN (CATALASE HPII), PROTOPORPHYRIN IX CONTAINING FE
Authors:Mate, M.J, Loewen, P.C, Fita, I.
Deposit date:1999-03-24
Release date:1999-04-06
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mutants that alter the covalent structure of catalase hydroperoxidase II from Escherichia coli.
J.Biol.Chem., 274, 1999
8PNU
DownloadVisualize
BU of 8pnu by Molmil
Cryo-EM structure of styrene oxide isomerase bound to benzylamine inhibitor
Descriptor: BENZYLAMINE, Nanobody, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Khanppnavar, B, Korkhov, V, Li, X.
Deposit date:2023-07-02
Release date:2024-04-03
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.12 Å)
Cite:Structural basis of the Meinwald rearrangement catalysed by styrene oxide isomerase.
Nat.Chem., 16, 2024
1CFF
DownloadVisualize
BU of 1cff by Molmil
NMR SOLUTION STRUCTURE OF A COMPLEX OF CALMODULIN WITH A BINDING PEPTIDE OF THE CA2+-PUMP
Descriptor: CALCIUM ION, CALCIUM PUMP, CALMODULIN
Authors:Elshorst, B, Hennig, M, Foersterling, H, Diener, A, Maurer, M, Schulte, P, Schwalbe, H, Krebs, J, Schmid, H, Vorherr, T, Carafoli, E, Griesinger, C.
Deposit date:1999-03-18
Release date:1999-09-24
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR solution structure of a complex of calmodulin with a binding peptide of the Ca2+ pump.
Biochemistry, 38, 1999
6LK0
DownloadVisualize
BU of 6lk0 by Molmil
Crystal structure of human wild type TRIP13
Descriptor: Pachytene checkpoint protein 2 homolog
Authors:Wang, Y, Huang, J, Li, B, Xue, H, Tricot, G, Hu, L, Xu, Z, Sun, X, Chang, S, Gao, L, Tao, Y, Xu, H, Xie, Y, Xiao, W, Yu, D, Kong, Y, Chen, G, Sun, X, Lian, F, Zhang, N, Wu, X, Mao, Z, Zhan, F, Zhu, W, Shi, J.
Deposit date:2019-12-17
Release date:2020-01-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Small-Molecule Inhibitor Targeting TRIP13 Suppresses Multiple Myeloma Progression.
Cancer Res., 80, 2020

226262

数据于2024-10-16公开中

PDB statisticsPDBj update infoContact PDBjnumon