Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8BMT
DownloadVisualize
BU of 8bmt by Molmil
Structure of GroEL:GroES-ATP complex plunge frozen 200 ms after reaction initiation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, Co-chaperonin GroES, ...
Authors:Dhurandhar, M, Efremov, R, Torino, S.
Deposit date:2022-11-10
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
8BLC
DownloadVisualize
BU of 8blc by Molmil
Structure of the GroEL-ATP complex plunge-frozen 50 ms after mixing with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, MAGNESIUM ION, ...
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-09
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
8BD3
DownloadVisualize
BU of 8bd3 by Molmil
Cryo-EM structure of the Photosystem II - LHCII supercomplex from Chlorella ohadi
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R)-beta,beta-caroten-3-ol, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Fadeeva, M, Klaiman, D, Caspy, I, Nelson, N.
Deposit date:2022-10-18
Release date:2023-08-09
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Structure of Chlorella ohadii Photosystem II Reveals Protective Mechanisms against Environmental Stress.
Cells, 12, 2023
8BMD
DownloadVisualize
BU of 8bmd by Molmil
Structure of GroEL-ATP complex under continuous turnover conditions
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, MAGNESIUM ION, ...
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-10
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
8BHF
DownloadVisualize
BU of 8bhf by Molmil
Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S11, ...
Authors:Absmeier, E, Chandrasekaran, V, O'Reilly, F.J, Stowell, J.A.W, Rappsilber, J, Passmore, L.A.
Deposit date:2022-10-31
Release date:2023-09-06
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Modulation of GluA2-gamma 5 synaptic complex desensitization, polyamine block and antiepileptic perampanel inhibition by auxiliary subunit cornichon-2.
Nat.Struct.Mol.Biol., 30, 2023
8BQS
DownloadVisualize
BU of 8bqs by Molmil
Cryo-EM structure of the I-II-III2-IV2 respiratory supercomplex from Tetrahymena thermophila
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2 iron, ...
Authors:Muhleip, A, Kock Flygaard, R, Baradaran, R, Amunts, A.
Deposit date:2022-11-21
Release date:2023-08-23
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of mitochondrial membrane bending by I-II-III2-IV2 supercomplex
To Be Published
7USW
DownloadVisualize
BU of 7usw by Molmil
Structure of Expanded C. elegans TMC-1 complex
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Jeong, H, Clark, S, Gouaux, E.
Deposit date:2022-04-26
Release date:2022-10-19
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of the TMC-1 complex illuminate mechanosensory transduction.
Nature, 610, 2022
7USX
DownloadVisualize
BU of 7usx by Molmil
Structure of Contracted C. elegans TMC-1 complex
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Jeong, H, Clark, S, Gouaux, E.
Deposit date:2022-04-26
Release date:2022-10-19
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structures of the TMC-1 complex illuminate mechanosensory transduction.
Nature, 610, 2022
8BH4
DownloadVisualize
BU of 8bh4 by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-29
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BHL
DownloadVisualize
BU of 8bhl by Molmil
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-31
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BCX
DownloadVisualize
BU of 8bcx by Molmil
Crystal structure of NrfA-1 from Geobacter metallireducens
Descriptor: HEME C, Nitrite reductase (cytochrome; ammonia-forming), SULFATE ION
Authors:Denkhaus, L, Siffert, F, Einsle, O.
Deposit date:2022-10-17
Release date:2023-08-30
Method:X-RAY DIFFRACTION (1.941 Å)
Cite:An unusual active site architecture in cytochrome c nitrite reductase NrfA-1 from Geobacter metallireducens.
Fems Microbiol.Lett., 370, 2023
8BGE
DownloadVisualize
BU of 8bge by Molmil
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-27
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.11 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
7UMS
DownloadVisualize
BU of 7ums by Molmil
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fab 41 heavy chain, ...
Authors:Jenni, S, Zongli, L, Wang, Y, Bessey, T, Salgado, E.N, Schmidt, A.G, Greenberg, H.B, Jiang, B, Harrison, S.C.
Deposit date:2022-04-07
Release date:2022-07-27
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion.
J.Virol., 96, 2022
8BHP
DownloadVisualize
BU of 8bhp by Molmil
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-31
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.37 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BDW
DownloadVisualize
BU of 8bdw by Molmil
Crystal structure of CnaB2 domain from Lactobacillus plantarum
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cell surface adherence protein,collagen-binding domain, LPXTG-motif cell wall anchor, ...
Authors:Taberman, H, Hakanpaa, J, Linder, M.B, Aranko, A.S.
Deposit date:2022-10-20
Release date:2023-02-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Biomolecular Click Reactions Using a Minimal pH-Activated Catcher/Tag Pair for Producing Native-Sized Spider-Silk Proteins.
Angew.Chem.Int.Ed.Engl., 62, 2023
6W8U
DownloadVisualize
BU of 6w8u by Molmil
Cryo-EM of the Pyrobaculum arsenaticum pilus
Descriptor: pilin
Authors:Wang, F, Baquero, D.P, Su, Z, Beltran, L.C, Prangishvili, D, Krupovic, M, Egelman, E.H.
Deposit date:2020-03-21
Release date:2020-07-08
Last modified:2021-10-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The structures of two archaeal type IV pili illuminate evolutionary relationships.
Nat Commun, 11, 2020
8B5L
DownloadVisualize
BU of 8b5l by Molmil
Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Pauwels, E, Shewakramani, N.R, De Wijngaert, B, Vermeire, K, Das, K.
Deposit date:2022-09-23
Release date:2023-03-01
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative.
Sci Adv, 9, 2023
2GFE
DownloadVisualize
BU of 2gfe by Molmil
Crystal structure of the GluR2 A476E S673D Ligand Binding Core Mutant at 1.54 Angstroms Resolution
Descriptor: GLUTAMIC ACID, Glutamate receptor 2, ZINC ION
Authors:Mayer, M.L.
Deposit date:2006-03-21
Release date:2006-08-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Interdomain interactions in AMPA and kainate receptors regulate affinity for glutamate.
J.Neurosci., 26, 2006
8B6C
DownloadVisualize
BU of 8b6c by Molmil
Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
Descriptor: 28S rRNA, 4-[[9-(cyclohexylmethyl)-3-methylidene-5-(4-methylphenyl)sulfonyl-1,5,9-triazacyclododec-1-yl]sulfonyl]-~{N},~{N}-dimethyl-aniline, 5.8S rRNA, ...
Authors:Pauwels, E, Shewakramani, N.R, De Wijngaert, B, Vermeire, K, Das, K.
Deposit date:2022-09-26
Release date:2023-02-22
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative.
Sci Adv, 9, 2023
7UGO
DownloadVisualize
BU of 7ugo by Molmil
Cryo-EM structure of BG24 inferred germline Fabs with mature CDR3s and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1
Descriptor: 10-1074 Fab heavy chain, 10-1074 Fab light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Dam, K.A, Bjorkman, P.J.
Deposit date:2022-03-25
Release date:2022-10-26
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:HIV-1 CD4-binding site germline antibody-Env structures inform vaccine design.
Nat Commun, 13, 2022
6VKN
DownloadVisualize
BU of 6vkn by Molmil
BG505 SOSIP.v5.2.N241.N289 in complex with rhesus macaque Fab RM19R
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Cottrell, C.A, Ward, A.B.
Deposit date:2020-01-21
Release date:2020-08-12
Last modified:2020-09-02
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations.
NPJ Vaccines, 5, 2020
6VME
DownloadVisualize
BU of 6vme by Molmil
Human ESCRT-I heterotetramer headpiece
Descriptor: Multivesicular body subunit 12A, Tumor susceptibility gene 101 protein, Vacuolar protein sorting-associated protein 28 homolog, ...
Authors:Flower, T.G, Hurley, J.H, Tjahjono, N.
Deposit date:2020-01-27
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:A helical assembly of human ESCRT-I scaffolds reverse-topology membrane scission.
Nat.Struct.Mol.Biol., 27, 2020
6VMI
DownloadVisualize
BU of 6vmi by Molmil
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
Descriptor: 12s rRNA, 16s rRNA, 28S ribosomal protein S10, ...
Authors:Sharma, M.R, Koripella, R.K, Agrawal, R.K.
Deposit date:2020-01-28
Release date:2020-08-05
Last modified:2021-02-17
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation.
Nat Commun, 11, 2020
6VRL
DownloadVisualize
BU of 6vrl by Molmil
Cryo-EM structure of the wild-type human serotonin transporter complexed with I-paroxetine and 8B6 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8B6 antibody, heavy chain, ...
Authors:Coleman, J.A, Navratna, V, Yang, D.
Deposit date:2020-02-07
Release date:2020-03-11
Last modified:2020-09-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Chemical and structural investigation of the paroxetine-human serotonin transporter complex.
Elife, 9, 2020
6VTT
DownloadVisualize
BU of 6vtt by Molmil
Cryo-EM Structure of CAP256-VRC26.25 Fab bound to HIV-1 Env trimer CAP256.wk34.c80 SOSIP.RnS2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2020-02-13
Release date:2020-04-08
Last modified:2021-10-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of Super-Potent Antibody CAP256-VRC26.25 in Complex with HIV-1 Envelope Reveals a Combined Mode of Trimer-Apex Recognition.
Cell Rep, 31, 2020

224201

数据于2024-08-28公开中

PDB statisticsPDBj update infoContact PDBjnumon