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PDB: 613 results

6OFO
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BU of 6ofo by Molmil
Crystal structure of split green fluorescent protein (GFP); s10 circular permutant (194-195)
Descriptor: Green fluorescent protein (GFP); s10 circular permutant (194-195)
Authors:Lin, C.-Y, Romei, M.G, Deller, M.C, Doukov, T.I, Boxer, S.G.
Deposit date:2019-03-31
Release date:2019-07-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019
7KM4
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BU of 7km4 by Molmil
Crystal Structure of Oxidized Version of Redox-Sensitive Superfolder Green Fluorescent Protein
Descriptor: Green fluorescent protein
Authors:Nguyen, T, Nicely, N.I, McCafferty, D.G.
Deposit date:2020-11-02
Release date:2021-11-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal Structure of Oxidized Version of Redox-Sensitive Superfolder Green Fluorescent Protein
To be Published
8BBJ
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BU of 8bbj by Molmil
Secretagogin (mouse) in complex with its target peptide from Syntaxin-4
Descriptor: CACODYLATE ION, CALCIUM ION, Green fluorescent protein,Syntaxin-4, ...
Authors:Schnell, R, Szodorai, E.
Deposit date:2022-10-13
Release date:2024-04-03
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A hydrophobic groove in secretagogin allows for alternate interactions with SNAP-25 and syntaxin-4 in endocrine tissues.
Proc.Natl.Acad.Sci.USA, 121, 2024
3EK4
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BU of 3ek4 by Molmil
Calcium-saturated GCaMP2 Monomer
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Akerboom, J, Velez Rivera, J.D, Looger, L.L, Schreiter, E.R.
Deposit date:2008-09-18
Release date:2008-12-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design
J.Biol.Chem., 284, 2009
5DY6
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BU of 5dy6 by Molmil
Enhanced superfolder GFP with DBCO at 148
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Jones, D.D, Rizkallah, P.J, Worthy, H.L.
Deposit date:2015-09-24
Release date:2016-07-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Molecular basis for functional switching of GFP by two disparate non-native post-translational modifications of a phenyl azide reaction handle.
Chem Sci, 7, 2016
2JAD
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BU of 2jad by Molmil
Yellow fluorescent protein - glutaredoxin fusion protein
Descriptor: SULFATE ION, YELLOW FLUORESCENT PROTEIN GLUTAREDOXIN FUSION PROTEIN
Authors:Hakansson, K.O, Winther, J.R.
Deposit date:2006-11-27
Release date:2006-12-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Glutaredoxin Grx1P C30S Mutant from Yeast.
Acta Crystallogr.,Sect.D, 63, 2007
3ED8
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BU of 3ed8 by Molmil
Application of the superfolder YFP bimolecular fluorescence complementation for studying protein-protein interactions in vitro
Descriptor: yellow fluorescence protein
Authors:Ottmann, C, Weyand, M.
Deposit date:2008-09-02
Release date:2009-01-20
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Applicability of superfolder YFP bimolecular fluorescence complementation in vitro.
Biol.Chem., 390, 2009
8T15
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BU of 8t15 by Molmil
Cryo-EM structure of dodecameric hub domain of CaMKII alpha
Descriptor: Venus-tagged CaMKII Alpha Association Domain
Authors:Chien, C.-T, Chiu, W, Khan, S.
Deposit date:2023-06-01
Release date:2024-06-12
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Hub stability in the calcium calmodulin-dependent protein kinase II.
Commun Biol, 7, 2024
8J0J
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BU of 8j0j by Molmil
AtSLAC1 8D mutant in closed state
Descriptor: CHLORIDE ION, CHOLESTEROL HEMISUCCINATE, Guard cell S-type anion channel SLAC1,Green fluorescent protein
Authors:Lee, Y, Lee, S.
Deposit date:2023-04-11
Release date:2023-11-22
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structures of the plant anion channel SLAC1 from Arabidopsis thaliana suggest a combined activation model.
Nat Commun, 14, 2023
6WV6
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BU of 6wv6 by Molmil
Human VKOR with phenindione
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Phenindione, Vitamin K epoxide reductase, ...
Authors:Liu, S, Sukumar, N, Li, W.
Deposit date:2020-05-05
Release date:2020-11-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation.
Science, 371, 2021
7V8A
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BU of 7v8a by Molmil
Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Angiotensin-converting enzyme 2 (ACE2) ectodomain, ...
Authors:Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D.
Deposit date:2021-08-22
Release date:2021-10-06
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 2
To Be Published
3WLD
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BU of 3wld by Molmil
Crystal structure of monomeric GCaMP6m
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Ding, J, Luo, A.F, Hu, L.Y, Wang, D.C, Shao, F.
Deposit date:2013-11-08
Release date:2014-01-22
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the ultrasensitive calcium indicator GCaMP6.
Sci China Life Sci, 57, 2014
8FEF
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BU of 8fef by Molmil
Structure of Mce1 transporter from Mycobacterium smegmatis (Map0)
Descriptor: ABC transporter, ATP-binding protein,Green fluorescent protein chimera, ABC-transporter integral membrane protein, ...
Authors:Chen, J, Bhabha, G, Ekiert, D.C.
Deposit date:2022-12-06
Release date:2023-02-22
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Structure of an endogenous mycobacterial MCE lipid transporter.
Nature, 620, 2023
8U4N
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BU of 8u4n by Molmil
Structure of Apo CXCR4/Gi complex
Descriptor: C-X-C chemokine receptor type 4, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Saotome, K, McGoldrick, L.L, Franklin, M.C.
Deposit date:2023-09-11
Release date:2024-03-13
Last modified:2024-10-02
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:Structural insights into CXCR4 modulation and oligomerization.
Nat.Struct.Mol.Biol., 2024
3U8P
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BU of 3u8p by Molmil
Cytochrome b562 integral fusion with EGFP
Descriptor: Cytochrome b562 integral fusion with enhanced green fluorescent protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Arpino, J, Czapinska, H, Piasecka, A, Edwards, W.R, Barker, P, Gajda, M, Bochtler, M, Jones, D.D.
Deposit date:2011-10-17
Release date:2012-08-29
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for efficient chromophore communication and energy transfer in a constructed didomain protein scaffold.
J.Am.Chem.Soc., 134, 2012
8FED
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BU of 8fed by Molmil
Structure of Mce1-LucB complex from Mycobacterium smegmatis (Map1)
Descriptor: ABC transporter, ATP-binding protein,Green fluorescent protein chimera, ABC-transporter integral membrane protein, ...
Authors:Chen, J, Bhabha, G, Ekiert, D.C.
Deposit date:2022-12-06
Release date:2023-02-22
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Structure of an endogenous mycobacterial MCE lipid transporter.
Nature, 620, 2023
8J6M
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BU of 8j6m by Molmil
SIDT1 protein
Descriptor: CHOLESTEROL, Green fluorescent protein,SID1 transmembrane family member 1, OLEIC ACID, ...
Authors:Zhang, J.T, Jiang, D.H.
Deposit date:2023-04-26
Release date:2024-05-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structural insights into double-stranded RNA recognition and transport by SID-1.
Nat.Struct.Mol.Biol., 31, 2024
5F9G
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BU of 5f9g by Molmil
pnGFP1.5-Y.Cro: circularly permuted green fluorescent protein (with a tyrosine-derived chromophore)
Descriptor: pnGFP1.5-Y.Cro,Green fluorescent protein
Authors:Remington, S.J.
Deposit date:2015-12-09
Release date:2016-02-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.772 Å)
Cite:pnGFP: circularly permuted green fluorescent protein
To Be Published
6H01
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BU of 6h01 by Molmil
Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66
Descriptor: Green fluorescent protein
Authors:Kesgin-Schaefer, S, Tidow, H.
Deposit date:2018-07-06
Release date:2019-04-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.776 Å)
Cite:Crystal structure of a domain-swapped photoactivatable sfGFP variant provides evidence for GFP folding pathway.
Febs J., 286, 2019
7FHO
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BU of 7fho by Molmil
Structure of AtTPC1 D240A/D454A/E528A mutant with 50 mM Ca2+
Descriptor: CALCIUM ION, Two pore calcium channel protein 1,GFP
Authors:Ye, F, Xu, L, Li, X, Jiang, Y, Guo, J.
Deposit date:2021-07-29
Release date:2021-12-01
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Voltage-gating and cytosolic Ca 2+ activation mechanisms of Arabidopsis two-pore channel AtTPC1.
Proc.Natl.Acad.Sci.USA, 118, 2021
3OGO
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BU of 3ogo by Molmil
Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212
Descriptor: GFP-nanobody, Green fluorescent protein, ISOPROPYL ALCOHOL
Authors:Kubala, M.H, Kovtun, O, Alexandrov, K, Collins, B.M.
Deposit date:2010-08-17
Release date:2010-08-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and thermodynamic analysis of the GFP:GFP-nanobody complex.
Protein Sci., 19, 2010
4Z4K
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BU of 4z4k by Molmil
Crystal structure of GFP-TAX1BP1 UBZ1+2 domain fusion protein
Descriptor: Green fluorescent protein,Tax1-binding protein 1, ZINC ION
Authors:Rohaim, A, Kawasaki, M, Wakatsuki, S.
Deposit date:2015-04-02
Release date:2016-04-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 283, 2016
6WV5
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BU of 6wv5 by Molmil
Human VKOR C43S mutant with vitamin K1 epoxide
Descriptor: (2R,3R)-2-hydroxy-3-methyl-2-[(2E,7S)-3,7,11,15-tetramethylhexadec-2-en-1-yl]-2,3-dihydronaphthalene-1,4-dione, Vitamin K epoxide reductase Cys43Ser mutant, termini restrained by green fluorescent protein
Authors:Liu, S, Sukumar, N, Li, W.
Deposit date:2020-05-05
Release date:2020-11-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation.
Science, 371, 2021
7V89
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BU of 7v89 by Molmil
Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Angiotensin-converting enzyme 2 (ACE2) ectodomain, ...
Authors:Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D.
Deposit date:2021-08-22
Release date:2021-10-06
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 1
To Be Published
7V86
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BU of 7v86 by Molmil
Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Green fluorescent protein, ...
Authors:Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D.
Deposit date:2021-08-22
Release date:2021-10-06
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form
To Be Published

226262

数据于2024-10-16公开中

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