5DY6
Enhanced superfolder GFP with DBCO at 148
Summary for 5DY6
| Entry DOI | 10.2210/pdb5dy6/pdb |
| Related | 5BT0 5BTT |
| Descriptor | Green fluorescent protein, SULFATE ION (2 entities in total) |
| Functional Keywords | click chemistry, non-canonical amino acids, superfolder gfp, dbco-amine, chromophore, fluorecence, fluorescent protein |
| Biological source | Aequorea victoria (Jellyfish) |
| Total number of polymer chains | 2 |
| Total formula weight | 52072.43 |
| Authors | Jones, D.D.,Rizkallah, P.J.,Worthy, H.L. (deposition date: 2015-09-24, release date: 2016-07-13, Last modification date: 2024-10-16) |
| Primary citation | Hartley, A.M.,Worthy, H.L.,Reddington, S.C.,Rizkallah, P.J.,Jones, D.D. Molecular basis for functional switching of GFP by two disparate non-native post-translational modifications of a phenyl azide reaction handle. Chem Sci, 7:6484-6491, 2016 Cited by PubMed Abstract: Through the genetic incorporation of a single phenyl azide group into superfolder GFP (sfGFP) at residue 148 we provide a molecular description of how this highly versatile chemical handle can be used to positively switch protein function and either photochemistry or bioconjugation. Replacement of H148 with -azido-l-phenylalanine (azF) blue shifts the major excitation peak ∼90 nm by disrupting the H-bond and proton transfer network that defines the chromophore charged state. Bioorthogonal click modification with a simple dibenzylcyclooctyne or UV irradiation shifts the neutral-anionic chromophore equilibrium, switching fluorescence to the optimal ∼490 nm excitation. Click modification also improved quantum yield over both the unmodified and original protein. Crystal structures of both the click modified and photochemically converted forms show that functional switching is due to local conformational changes that optimise the interaction networks surrounding the chromophore. Crystal structure and mass spectrometry studies of the irradiated protein suggest that the phenyl azide converts to a dehydroazepine and/or an azepinone. Thus, protein embedded phenyl azides can be used beyond simple photocrosslinkers and passive conjugation handles, and mimic many natural post-translational modifications: modulation though changes in interaction networks. PubMed: 28451106DOI: 10.1039/c6sc00944a PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.66 Å) |
Structure validation
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