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6B09
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BU of 6b09 by Molmil
Crystal structure of HsNUDT16 in complex with diADPR (soaked)
Descriptor: CHLORIDE ION, MAGNESIUM ION, SODIUM ION, ...
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-09-14
Release date:2019-01-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
7V9X
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BU of 7v9x by Molmil
Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom
Descriptor: DNA (105-MER), RNA (14-MER), RNA (81-MER), ...
Authors:Wang, Y.J, Guan, Z.Y, Zou, T.T.
Deposit date:2021-08-27
Release date:2022-08-31
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Structural insight into anti-phage Retron-Ec86 complex
To Be Published
8D8L
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BU of 8d8l by Molmil
Yeast mitochondrial small subunit assembly intermediate (State 3)
Descriptor: 15S ribosomal RNA, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial, ...
Authors:Burnside, C, Harper, N, Klinge, S.
Deposit date:2022-06-08
Release date:2022-12-14
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Principles of mitoribosomal small subunit assembly in eukaryotes.
Nature, 614, 2023
5FJ7
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BU of 5fj7 by Molmil
Structure of the P2 polymerase inside in vitro assembled bacteriophage phi6 polymerase complex, with P1 included
Descriptor: MAJOR INNER PROTEIN P1, MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Ilca, S, Kotecha, A, Sun, X, Poranen, M.P, Stuart, D.I, Huiskonen, J.T.
Deposit date:2015-10-06
Release date:2015-11-04
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Localized Reconstruction of Subunits from Electron Cryomicroscopy Images of Macromolecular Complexes.
Nat.Commun., 6, 2015
7X6S
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BU of 7x6s by Molmil
lymphocytic choriomeningitis virus RNA-dependent RNA polymerase (LCMV-L protein)
Descriptor: MANGANESE (II) ION, RNA-directed RNA polymerase L
Authors:Liu, L, Lou, Z.
Deposit date:2022-03-08
Release date:2023-09-13
Last modified:2023-09-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure basis for allosteric regulation of lymphocytic choriomeningitis virus polymerase function by Z matrix protein.
Protein Cell, 14, 2023
5FJ6
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BU of 5fj6 by Molmil
Structure of the P2 polymerase inside in vitro assembled bacteriophage phi6 polymerase complex
Descriptor: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Ilca, S, Kotecha, A, Sun, X, Poranen, M.P, Stuart, D.I, Huiskonen, J.T.
Deposit date:2015-10-06
Release date:2015-11-04
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Localized Reconstruction of Subunits from Electron Cryomicroscopy Images of Macromolecular Complexes.
Nat.Commun., 6, 2015
5O1W
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BU of 5o1w by Molmil
Structure of Nrd1 RNA binding domain
Descriptor: 1,2-ETHANEDIOL, Protein NRD1
Authors:Franco-Echevarria, E, Perez-Canadillas, J.M, Gonzalez, B.
Deposit date:2017-05-19
Release date:2017-08-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition.
Nucleic Acids Res., 45, 2017
4NUT
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BU of 4nut by Molmil
Crystal structure of the complex between Snu13p and the PEP domain of Rsa1
Descriptor: 13 kDa ribonucleoprotein-associated protein, Ribosome assembly 1 protein, SULFATE ION
Authors:Charron, C, Chagot, M.E, Manival, X, Branlant, C, Charpentier, B.
Deposit date:2013-12-04
Release date:2014-12-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Proteomic and 3D structure analyses highlight the C/D box snoRNP assembly mechanism and its control
J.Cell Biol., 207, 2014
8G2E
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BU of 8g2e by Molmil
PKM2 bound to compound 2
Descriptor: 1,2-ETHANEDIOL, 3-[(3-aminophenyl)methyl]-5-methyl-7-[methyl(oxidanyl)-$l^{3}-sulfanyl]pyridazino[4,5-b]indol-4-one, MAGNESIUM ION, ...
Authors:Stuckey, J.A.
Deposit date:2023-02-03
Release date:2023-05-17
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.838 Å)
Cite:Development of Novel Small-Molecule Activators of Pyruvate Kinase Muscle Isozyme 2, PKM2, to Reduce Photoreceptor Apoptosis.
Pharmaceuticals, 16, 2023
7Q3Z
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BU of 7q3z by Molmil
DNA/RNA binding protein
Descriptor: SODIUM ION, Schlafen family member 5, ZINC ION
Authors:Huber, E, Lammens, K.
Deposit date:2021-10-29
Release date:2022-01-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and biochemical characterization of human Schlafen 5.
Nucleic Acids Res., 50, 2022
5LYS
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BU of 5lys by Molmil
The crystal structure of 7SK 5'-hairpin - Gold derivative
Descriptor: 7SK RNA, GOLD ION, MAGNESIUM ION, ...
Authors:Martinez-Zapien, D, Legrand, P, McEwen, A.G, Pasquali, S, Dock-Bregeon, A.-C.
Deposit date:2016-09-28
Release date:2017-01-25
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:The crystal structure of the 5 functional domain of the transcription riboregulator 7SK.
Nucleic Acids Res., 45, 2017
1PC0
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BU of 1pc0 by Molmil
NMR Structure of the Archaeal Homologue of RNase P Protein Rpp29
Descriptor: Hypothetical protein AF1917
Authors:Sidote, D.J, Hoffman, D.W.
Deposit date:2003-05-15
Release date:2003-12-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR Structure of an Archaeal Homologue of Ribonuclease P Protein Rpp29
Biochemistry, 42, 2003
1NWY
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BU of 1nwy by Molmil
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
Descriptor: 23S RIBOSOMAL RRNA, 5S RIBOSOMAL RRNA, AZITHROMYCIN, ...
Authors:Schluenzen, F, Harms, J, Franceschi, F, Hansen, H.A.S, Bartels, H, Zarivach, R, Yonath, A.
Deposit date:2003-02-07
Release date:2003-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for the antibiotic activity of ketolides and azalides.
Structure, 11, 2003
6NBT
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BU of 6nbt by Molmil
CRISPR Complex Subunit Csm3 from Staphylococcus epidermidis RP62a
Descriptor: CALCIUM ION, CRISPR-associated protein, SAMARIUM (III) ION
Authors:Dorsey, B.W, Mondragon, A.
Deposit date:2018-12-10
Release date:2019-02-13
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural organization of a Type III-A CRISPR effector subcomplex determined by X-ray crystallography and cryo-EM.
Nucleic Acids Res., 47, 2019
2EET
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BU of 2eet by Molmil
Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine
Descriptor: ACETATE ION, COBALT HEXAMMINE(III), Guanine Riboswitch, ...
Authors:Gilbert, S.D, Edwards, A.L, Batey, R.T.
Deposit date:2007-02-18
Release date:2007-11-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mutational analysis of the purine riboswitch aptamer domain
Biochemistry, 46, 2007
8BN8
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BU of 8bn8 by Molmil
METTL3-METTL14 heterodimer bound to the SAM competitive small molecule inhibitor STM3006
Descriptor: 2-[[4-(6-bromanyl-2~{H}-indazol-4-yl)-1,2,3-triazol-1-yl]methyl]-6-[(4,4-dimethylpiperidin-1-yl)methyl]imidazo[1,2-a]pyridine, N6-adenosine-methyltransferase catalytic subunit, N6-adenosine-methyltransferase non-catalytic subunit
Authors:Pilka, E.S, Thomas, B, Blackaby, W, Hardick, D, Feeney, K, Ridgill, M, Rotty, B, Rausch, O.
Deposit date:2022-11-13
Release date:2023-09-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.213 Å)
Cite:Inhibition of METTL3 Results in a Cell-Intrinsic Interferon Response That Enhances Antitumor Immunity.
Cancer Discov, 13, 2023
2EEU
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BU of 2eeu by Molmil
Guanine riboswitch U22A, A52U mutant bound to hypoxanthine
Descriptor: ACETATE ION, COBALT HEXAMMINE(III), Guanine riboswitch, ...
Authors:Gilbert, S.D, Love, C.E, Batey, R.T.
Deposit date:2007-02-19
Release date:2007-11-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mutational analysis of the purine riboswitch aptamer domain
Biochemistry, 46, 2007
7JIL
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BU of 7jil by Molmil
70S ribosome Flavobacterium johnsoniae
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Ortega, J.
Deposit date:2020-07-23
Release date:2020-12-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.
Nucleic Acids Res., 49, 2021
4K6M
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BU of 4k6m by Molmil
Crystal Structure of the full-length Japanese encephalitis virus NS5
Descriptor: Polyprotein, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
Authors:Lu, G, Gong, P.
Deposit date:2013-04-16
Release date:2013-08-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the full-length Japanese encephalitis virus NS5 reveals a conserved methyltransferase-polymerase interface
Plos Pathog., 9, 2013
2EEV
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BU of 2eev by Molmil
Guanine riboswitch U22C, A52G mutant bound to hypoxanthine
Descriptor: ACETATE ION, COBALT HEXAMMINE(III), HYPOXANTHINE, ...
Authors:Gilbert, S.D, Love, C.E, Batey, R.T.
Deposit date:2007-02-19
Release date:2007-11-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mutational analysis of the purine riboswitch aptamer domain
Biochemistry, 46, 2007
5ECD
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BU of 5ecd by Molmil
Structure of the Shigella flexneri VapC mutant D98N crystal form 1
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, tRNA(fMet)-specific endonuclease VapC
Authors:Xu, K.
Deposit date:2015-10-20
Release date:2016-02-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri.
Proteins, 84, 2016
7VGQ
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BU of 7vgq by Molmil
Cryo-EM structure of Machupo virus polymerase L in complex with matrix protein Z
Descriptor: Maltose/maltodextrin-binding periplasmic protein,RING finger protein Z, RNA-directed RNA polymerase L, ZINC ION
Authors:Zhang, X, Ma, J, Zhang, S.
Deposit date:2021-09-18
Release date:2021-09-29
Last modified:2022-03-02
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of Machupo virus polymerase in complex with matrix protein Z.
Nat Commun, 12, 2021
7VH1
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BU of 7vh1 by Molmil
Cryo-EM structure of Machupo virus dimeric L-Z complex
Descriptor: Maltose/maltodextrin-binding periplasmic protein,RING finger protein Z, RNA-directed RNA polymerase L, ZINC ION
Authors:Zhang, X, Ma, J, Zhang, S.
Deposit date:2021-09-20
Release date:2021-09-29
Last modified:2022-03-02
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of Machupo virus polymerase in complex with matrix protein Z.
Nat Commun, 12, 2021
2EEW
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BU of 2eew by Molmil
Guanine Riboswitch U47C mutant bound to hypoxanthine
Descriptor: ACETATE ION, COBALT HEXAMMINE(III), Guanine riboswitch, ...
Authors:Gilbert, S.D, Love, C.E, Batey, R.T.
Deposit date:2007-02-19
Release date:2007-11-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Mutational analysis of the purine riboswitch aptamer domain
Biochemistry, 46, 2007
2EES
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BU of 2ees by Molmil
Guanine riboswitch A21U, U75A mutant bound to hypoxanthine
Descriptor: ACETATE ION, COBALT HEXAMMINE(III), Guanine riboswitch, ...
Authors:Gilbert, S.D, Edwards, A.L, Batey, R.T.
Deposit date:2007-02-18
Release date:2007-11-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mutational analysis of the purine riboswitch aptamer domain
Biochemistry, 46, 2007

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