5ECD

Structure of the Shigella flexneri VapC mutant D98N crystal form 1

Summary for 5ECD

DescriptortRNA(fMet)-specific endonuclease VapC, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID (3 entities in total)
Functional Keywordstoxin, pin-domain, hepes, hydrolase
Biological sourceShigella flexneri
Total number of polymer chains2
Total molecular weight31804.56
Authors
Xu, K. (deposition date: 2015-10-20, release date: 2016-02-17, Last modification date: 2018-01-17)
Primary citation
Xu, K.,Dedic, E.,Brodersen, D.E.
Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri.
Proteins, 84:892-899, 2016
PubMed: 26833558 (PDB entries with the same primary citation)
DOI: 10.1002/prot.25002
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.75 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.199601.4%5.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation report