Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ECD

Structure of the Shigella flexneri VapC mutant D98N crystal form 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX II BEAMLINE I911-3
Synchrotron siteMAX II
BeamlineI911-3
Temperature [K]80
Detector technologyCCD
Collection date2014-10-01
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.9795
Spacegroup nameH 3
Unit cell lengths121.450, 121.450, 51.740
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution25.410 - 1.750
R-factor0.1635
Rwork0.161
R-free0.19720
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.937
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (dev_1839)
Data quality characteristics
 Overall
Low resolution limit [Å]25.410
High resolution limit [Å]1.750
Number of reflections2917
<I/σ(I)>15.69
Completeness [%]99.9
Redundancy3.84
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7292.1520% PEG 3350, 0.2M sodium malonate, NaOH-Hepes, pH7.0

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon