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8EK6
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BU of 8ek6 by Molmil
UCA Y35N (unbound) Fab from CH65-CH67 lineage
Descriptor: UCA Fab heavy chain, UCA Fab light chain
Authors:Maurer, D.P, Schmidt, A.G.
Deposit date:2022-09-20
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.954 Å)
Cite:Hierarchical sequence-affinity landscapes shape the evolution of breadth in an anti-influenza receptor binding site antibody.
Elife, 12, 2023
8EKH
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BU of 8ekh by Molmil
I-2 Y35N H35N (unbound) Fab from CH65-CH67 lineage
Descriptor: I-2 Fab heavy chain, I-2 Fab light chain
Authors:Maurer, D.P, Schmidt, A.G.
Deposit date:2022-09-21
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Hierarchical sequence-affinity landscapes shape the evolution of breadth in an anti-influenza receptor binding site antibody.
Elife, 12, 2023
1G21
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BU of 1g21 by Molmil
MGATP-BOUND AND NUCLEOTIDE-FREE STRUCTURES OF A NITROGENASE PROTEIN COMPLEX BETWEEN LEU127DEL-FE PROTEIN AND THE MOFE PROTEIN
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Chiu, H.-J, Peters, J.W, Lanzilotta, W.N, Ryle, M.J, Seefeldt, L.C, Howard, J.B, Rees, D.C.
Deposit date:2000-10-16
Release date:2001-01-31
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:MgATP-Bound and nucleotide-free structures of a nitrogenase protein complex between the Leu 127 Delta-Fe-protein and the MoFe-protein.
Biochemistry, 40, 2001
7OEV
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BU of 7oev by Molmil
Hepatitis B core protein mutant F97L with bound GSLLGRMKGA
Descriptor: Capsid protein, GSLLGRMKGA
Authors:Makbul, C, Bottcher, B.
Deposit date:2021-05-04
Release date:2021-05-19
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Conformational Plasticity of Hepatitis B Core Protein Spikes Promotes Peptide Binding Independent of the Secretion Phenotype.
Microorganisms, 9, 2021
5O03
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BU of 5o03 by Molmil
GII.10 Vietnam 026 protruding domain in complex with Nanobody Nano-32
Descriptor: 1,2-ETHANEDIOL, Capsid protein, IMIDAZOLE, ...
Authors:Koromyslova, A.D, Hansman, G.H.
Deposit date:2017-05-16
Release date:2017-10-04
Last modified:2019-04-10
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Nanobodies targeting norovirus capsid reveal functional epitopes and potential mechanisms of neutralization.
PLoS Pathog., 13, 2017
6XUK
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BU of 6xuk by Molmil
AbLIFT design 15 of Ab 1116NS19.9
Descriptor: GLYCEROL, Heavy chain, Light chain, ...
Authors:Diskin, R, Borenstein-Katz, A.
Deposit date:2020-01-20
Release date:2021-02-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Biomolecular Recognition of the Glycan Neoantigen CA19-9 by Distinct Antibodies.
J.Mol.Biol., 433, 2021
7OEN
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BU of 7oen by Molmil
Hepatitis B core protein mutant P5T with bound GSLLGRMKGA
Descriptor: Capsid protein, GSLLGRMKGA
Authors:Bottcher, B, Makbul, C.
Deposit date:2021-05-03
Release date:2021-05-19
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Conformational Plasticity of Hepatitis B Core Protein Spikes Promotes Peptide Binding Independent of the Secretion Phenotype.
Microorganisms, 9, 2021
3PC7
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BU of 3pc7 by Molmil
X-ray crystal structure of the DNA ligase III-alpha BRCT domain.
Descriptor: DNA ligase 3
Authors:Cuneo, M.J, Krahn, J.M, London, R.E.
Deposit date:2010-10-21
Release date:2011-06-15
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The structural basis for partitioning of the XRCC1/DNA ligase III-{alpha} BRCT-mediated dimer complexes.
Nucleic Acids Res., 39, 2011
4WK4
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BU of 4wk4 by Molmil
Metal Ion and Ligand Binding of Integrin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ALA-CYS-ARG-GLY-ASP-GLY-TRP-CYS, ...
Authors:Xia, W, Springer, T.A.
Deposit date:2014-10-01
Release date:2014-12-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Metal ion and ligand binding of integrin alpha 5 beta 1.
Proc.Natl.Acad.Sci.USA, 111, 2014
3PC6
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BU of 3pc6 by Molmil
X-ray crystal structure of the second XRCC1 BRCT domain.
Descriptor: DNA repair protein XRCC1
Authors:Cuneo, M.J, Krahn, J.M, London, R.E.
Deposit date:2010-10-21
Release date:2011-06-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for partitioning of the XRCC1/DNA ligase III-{alpha} BRCT-mediated dimer complexes.
Nucleic Acids Res., 39, 2011
8OYF
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BU of 8oyf by Molmil
Crystal structure of ASBTNM in lipidic cubic phase without substrate bound
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, NICKEL (II) ION, PHOSPHATIDYLETHANOLAMINE, ...
Authors:Becker, P, Cameron, A.D.
Deposit date:2023-05-04
Release date:2023-07-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mechanism of substrate binding and transport in BASS transporters.
Biorxiv, 2023
8OYG
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BU of 8oyg by Molmil
Crystal structure of ASBTNM in complex with pantoate
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CADMIUM ION, PANTOATE, ...
Authors:Becker, P, Cameron, A.D.
Deposit date:2023-05-04
Release date:2023-07-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanism of substrate binding and transport in BASS transporters.
Biorxiv, 2023
6Q4N
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BU of 6q4n by Molmil
Fusidic acid bound AcrB_V340A
Descriptor: (2S)-3-hydroxypropane-1,2-diyl didecanoate, DARPin, DECANE, ...
Authors:Tam, H.K, Pos, K.M.
Deposit date:2018-12-06
Release date:2019-11-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Binding and Transport of Carboxylated Drugs by the Multidrug Transporter AcrB.
J.Mol.Biol., 432, 2020
7RTP
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BU of 7rtp by Molmil
Structure of full-length human lambda-6A light chain JTO in complex with urea stabilizer 20 [1-(2-(7-(diethylamino)-4-methyl-2-oxo-2H-chromen-3-yl)ethyl)-3-(pyridin-3-ylmethyl)urea]
Descriptor: JTO light chain, N-{2-[7-(diethylamino)-4-methyl-2-oxo-2H-1-benzopyran-3-yl]ethyl}-N'-[(pyridin-3-yl)methyl]urea, PHOSPHATE ION
Authors:Yan, N.L, Wilson, I.A, Kelly, J.W.
Deposit date:2021-08-13
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Amyloidogenic immunoglobulin light chain kinetic stabilizers comprising a simple urea linker module reveal a novel binding sub-site.
Bioorg.Med.Chem.Lett., 60, 2022
6Q8Y
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BU of 6q8y by Molmil
Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Tesina, P, Heckel, E, Cheng, J, Buschauer, R, Kater, L, Berninghausen, O, Becker, T, Beckmann, R.
Deposit date:2018-12-16
Release date:2019-03-13
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the 80S ribosome-Xrn1 nuclease complex.
Nat.Struct.Mol.Biol., 26, 2019
4WJL
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BU of 4wjl by Molmil
Structure of human dipeptidyl peptidase 10 (DPPY): a modulator of neuronal Kv4 channels
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Inactive dipeptidyl peptidase 10, ...
Authors:Bezerra, G.A, Dobrovetsky, E, Seitova, A, Fedosyuk, S, Dhe-Paganon, S, Gruber, K.
Deposit date:2014-09-30
Release date:2015-03-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of human dipeptidyl peptidase 10 (DPPY): a modulator of neuronal Kv4 channels.
Sci Rep, 5, 2015
4RP4
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BU of 4rp4 by Molmil
Crystal Structure of the L27 domain of Discs Large 1 (target ID NYSGRC-010766) from Drosophila melanogaster (space group P212121)
Descriptor: Disks large 1 tumor suppressor protein, FORMIC ACID
Authors:Ghosh, A, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-10-29
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structures of the L27 Domain of Disc Large Homologue 1 Protein Illustrate a Self-Assembly Module.
Biochemistry, 57, 2018
4WNR
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BU of 4wnr by Molmil
Structure of methanosarcina barkeri Roco2 RocCORdC bound to GDP
Descriptor: GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich-repeat protein, ...
Authors:Terheyden, S.
Deposit date:2014-10-14
Release date:2014-11-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Revisiting the Roco G-protein cycle.
Biochem.J., 465, 2015
7XFN
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BU of 7xfn by Molmil
Structure of nucleosome-DI complex (-55I, Apo state)
Descriptor: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Zheng, L, Tsai, B, Gao, N.
Deposit date:2022-04-01
Release date:2023-04-19
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023
4RP9
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BU of 4rp9 by Molmil
Bacterial vitamin C transporter UlaA/SgaT in C2 form
Descriptor: ASCORBIC ACID, Ascorbate-specific permease IIC component UlaA, PENTAETHYLENE GLYCOL, ...
Authors:Wang, J.W.
Deposit date:2014-10-29
Release date:2015-03-04
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:Crystal structure of a phosphorylation-coupled vitamin C transporter.
Nat.Struct.Mol.Biol., 22, 2015
5O9H
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BU of 5o9h by Molmil
Crystal structure of thermostabilised human C5a anaphylatoxin chemotactic receptor 1 (C5aR) in complex with NDT9513727
Descriptor: 1-(1,3-benzodioxol-5-yl)-~{N}-(1,3-benzodioxol-5-ylmethyl)-~{N}-[(3-butyl-2,5-diphenyl-imidazol-4-yl)methyl]methanamine, C5a anaphylatoxin chemotactic receptor 1, CITRIC ACID, ...
Authors:Robertson, N, Rappas, M, Dore, A.S, Brown, J, Bottegoni, G, Koglin, M, Cansfield, J, Jazayeri, A, Cooke, R.M, Marshall, F.H.
Deposit date:2017-06-19
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the complement C5a receptor bound to the extra-helical antagonist NDT9513727.
Nature, 553, 2018
7XFL
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BU of 7xfl by Molmil
Structure of nucleosome-AAG complex (A-53I, free state)
Descriptor: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Zheng, L, Tsai, B, Gao, N.
Deposit date:2022-04-01
Release date:2023-04-19
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023
7XFM
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BU of 7xfm by Molmil
Structure of nucleosome-AAG complex (A-53I, post-catalytic state)
Descriptor: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ...
Authors:Zheng, L, Tsai, B, Gao, N.
Deposit date:2022-04-01
Release date:2023-04-19
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023
6ZKZ
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BU of 6zkz by Molmil
Crystal structure of InhA:01 TCR in complex with HLA-E (F116C) bound to InhA (53-61 H4C)
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, Enoyl-[acyl-carrier-protein] reductase [NADH], ...
Authors:Srikannathasan, V, Karuppiah, V, Robinson, R.A.
Deposit date:2020-06-30
Release date:2022-01-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.
Eur.J.Immunol., 52, 2022
7XFH
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BU of 7xfh by Molmil
Structure of nucleosome-AAG complex (A-30I, post-catalytic state)
Descriptor: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ...
Authors:Zheng, L, Tsai, B, Gao, N.
Deposit date:2022-04-01
Release date:2023-04-19
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023

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