PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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1XV0	Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3' Authors: Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H. Deposit date: 2004-10-26 Release date: 2004-11-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs Biochemistry, 44, 2005
4AL6	Crystal structure of the S148ACsy4-crRNA complex Descriptor: CRRNA, 5'-R(CP*UP*GP*CP*CP*GP*UP*AP*UP*AP*GP*GP* CP*AP*GP*C)-3', CSY4 ENDORIBONUCLEASE Authors: Haurwitz, R.E, Sternberg, S.H, Doudna, J.A. Deposit date: 2012-03-02 Release date: 2012-06-13 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.63 Å) Cite: Csy4 Relies on an Unusual Catalytic Dyad to Position and Cleave Crispr RNA. Embo J., 31, 2012
2D54	Crystal Structure of Methionyl tRNA Synthetase Y225A Mutant from Thermus Thermophilus Descriptor: Methionyl-tRNA synthetase, ZINC ION Authors: Konno, M, Takeda, R, Takasaka, R, Mori, Y, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-10-28 Release date: 2006-12-19 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2 Å) Cite: Y225F/Amutation for Met-tRNA synthetase reveals importance of hydrophobic circumstance To be Published
2D5B	Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000 Descriptor: Methionyl-tRNA Synthetase, ZINC ION Authors: Konno, M, Takeda, R, Takasaka, R, Mori, Y, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-10-31 Release date: 2006-11-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Y225F/A Mutation for Met-tRNA synthetase reveals importance of hydrophobic circumstances To be Published
4G84	Crystal structure of human HisRS Descriptor: CHLORIDE ION, Histidine--tRNA ligase, cytoplasmic, ... Authors: Wei, Z, Wu, J, Zhou, J.J, Yang, X.-L, Zhang, M, Schimmel, P. Deposit date: 2012-07-21 Release date: 2012-09-26 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Internally Deleted Human tRNA Synthetase Suggests Evolutionary Pressure for Repurposing. Structure, 20, 2012
6Q8X	Respiratory complex I from Thermus thermophilus with bound Pyridaben. Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ... Authors: Gutierrez-Fernandez, J, Minhas, G.S, Sazanov, L.A. Deposit date: 2018-12-16 Release date: 2020-09-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.508 Å) Cite: Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
6Q8W	Respiratory complex I from Thermus thermophilus with bound Aureothin. Descriptor: Aureothin, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... Authors: Gutierrez-Fernandez, J, Minhas, G.S, Sazanov, L.A. Deposit date: 2018-12-16 Release date: 2020-09-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
6Q8O	Respiratory complex I from Thermus thermophilus with bound Piericidin A Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ... Authors: Gutierrez-Fernandez, J, Minhas, G.S, Sazanov, L.A. Deposit date: 2018-12-15 Release date: 2020-09-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.605 Å) Cite: Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
6UTM	Native E. coli Glyceraldehyde 3-phosphate dehydrogenase Descriptor: GLYCEROL, Glyceraldehyde-3-phosphate dehydrogenase, SN-GLYCEROL-3-PHOSPHATE, ... Authors: Rodriguez-Hernandez, A, Romo-Arevalo, E, Rodriguez-Romero, A. Deposit date: 2019-10-29 Release date: 2019-12-11 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.14 Å) Cite: A Novel Substrate-Binding Site in the X-Ray Structure of an Oxidized E. coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated by Single-Wavelength Anomalous Dispersion Crystals, 9, 2019
6UTN	Native E. coli Glyceraldehyde 3-phosphate dehydrogenase Descriptor: ACETATE ION, Glyceraldehyde-3-phosphate dehydrogenase, PHOSPHATE ION, ... Authors: Rodriguez-Hernandez, A, Romo-Arevalo, E, Rodriguez-Romero, A. Deposit date: 2019-10-29 Release date: 2019-12-11 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.79 Å) Cite: A Novel Substrate-Binding Site in the X-Ray Structure of an Oxidized E. coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated by Single-Wavelength Anomalous Dispersion Crystals, 9, 2019
6UTO	Native E. coli Glyceraldehyde 3-phosphate dehydrogenase Descriptor: ACETATE ION, Glyceraldehyde-3-phosphate dehydrogenase, SN-GLYCEROL-3-PHOSPHATE, ... Authors: Rodriguez-Hernandez, A, Romo-Arevalo, E, Rodriguez-Romero, A. Deposit date: 2019-10-29 Release date: 2019-12-11 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.64 Å) Cite: A Novel Substrate-Binding Site in the X-Ray Structure of an Oxidized E. coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated by Single-Wavelength Anomalous Dispersion Crystals, 9, 2019
3BBV	The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex Descriptor: tRNA(Phe) Authors: Jiang, L, Abrahams, J.P. Deposit date: 2007-11-11 Release date: 2008-10-21 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (10 Å) Cite: Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15. J.Mol.Biol., 386, 2009
8CG6	The ACP crosslinked to the SAT of the cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1 (ACP:SAT-KS-MAT) Descriptor: Acyl carrier protein (ACP) of Non-reducing polyketide synthase CTB1, Non-reducing polyketide synthase CTB1, N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-[2-(propanoylamino)ethyl]-beta-alaninamide Authors: Munoz-Hernandez, H, Tittes, Y.U, Maier, T. Deposit date: 2023-02-03 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: CryoEM structure of ACP crosslinked to SAT of the cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1 (ACP:SAT-KS-MAT) at 3.4 Angstroms resolution To Be Published
8UGC	FD15: Flat repeat helix-turn-helix-turn protein Descriptor: FD15 Authors: Davila-Hernandez, F, Bera, A.K, Kang, A, Baker, D. Deposit date: 2023-10-05 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (4 Å) Cite: Directing polymorph specific calcium carbonate formation with de novo protein templates. Nat Commun, 14, 2023
8BY8	The cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1 (SAT-KS-MAT) Descriptor: Non-reducing polyketide synthase CTB1 Authors: Munoz-Hernandez, H, Maier, T. Deposit date: 2022-12-12 Release date: 2024-01-10 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: The cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1 (SAT-KS-MAT) at 2.5 Angstroms resolution To Be Published
8CG5	The ACP crosslinked to the KS of the cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1 (SAT-KS:ACP-MAT) Descriptor: Acyl carrier protein (ACP) of Non-reducing polyketide synthase CTB1, Non-reducing polyketide synthase CTB1, N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-[2-(propanoylamino)ethyl]-beta-alaninamide Authors: Munoz-Hernandez, H, Tittes, Y.U, Maier, T. Deposit date: 2023-02-03 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: CryoEM structure of ACP crosslinked to KS of the cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1 (SAT-KS:ACP-MAT) at 2.7 Angstroms resolution To Be Published
8CG4	The organise full-length structure of the fungal non-reducing polyketide synthase (NR-PKS) PksA Descriptor: Norsolorinic acid synthase Authors: Munoz-Hernandez, H, Maier, T. Deposit date: 2023-02-03 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: CryoEM structure of the Aspergilus sp. fungal non-reducing polyketide synthase (NR-PKS) PksA at 2.6 Angstroms resolution To Be Published
7Q4Q	Magacizumab Fab fragment in complex with human LRG1 epitope Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, LRG1 epitope, Magacizumab heavy chain, ... Authors: Gutierrez-Fernandez, J, Luecke, H. Deposit date: 2021-11-01 Release date: 2022-06-15 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural basis of human LRG1 recognition by Magacizumab, a humanized monoclonal antibody with therapeutic potential. Acta Crystallogr D Struct Biol, 78, 2022
5KKG	Crystal structure of E72A mutant of ancestral protein ancMT of ADP-dependent sugar kinases family Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, IODIDE ION, ... Authors: Castro-Fernandez, V, Herrera-Morande, A, Zamora, R, Merino, F, Pereira, H.M, Brandao-Neto, J, Garratt, R, Guixe, V. Deposit date: 2016-06-21 Release date: 2017-07-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.608 Å) Cite: Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases. J. Biol. Chem., 292, 2017
6I0D	Respiratory complex I from Thermus thermophilus with bound Decyl-Ubiquinone Descriptor: 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... Authors: Gutierrez-Fernandez, J, Minhas, G.S, Sazanov, L.A. Deposit date: 2018-10-25 Release date: 2020-09-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
6I1P	Respiratory complex I from Thermus thermophilus with bound NADH Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... Authors: Gutierrez-Fernandez, J, Minhas, G.S, Sazanov, L.A. Deposit date: 2018-10-29 Release date: 2020-09-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.207 Å) Cite: Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
5K27	Crystal structure of ancestral protein ancMT of ADP-dependent sugar kinases family. Descriptor: ADENOSINE MONOPHOSPHATE, IODIDE ION, ancMT Authors: Castro-Fernandez, V, Herrera-Morande, A, Zamora, R, Merino, F, Pereira, H.M, Brandao-Neto, J, Garratt, R, Guixe, V. Deposit date: 2016-05-18 Release date: 2017-05-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.58 Å) Cite: Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases. J. Biol. Chem., 292, 2017
5U8C	CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX WITH GLYCINE AND NVP-AAM077 Descriptor: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A, GLYCEROL, ... Authors: Romero-Hernandez, A, Furukawa, H. Deposit date: 2016-12-14 Release date: 2017-05-17 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.598 Å) Cite: Novel Mode of Antagonist Binding in NMDA Receptors Revealed by the Crystal Structure of the GluN1-GluN2A Ligand-Binding Domain Complexed to NVP-AAM077. Mol. Pharmacol., 92, 2017
5I3D	Sulfolobus solfataricus beta-glycosidase - E387Y mutant Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, ACETATE ION, Beta-galactosidase Authors: Iglesias-Fernandez, J, Hancock, S.M, Lee, S.S, McAuley, K.E, Fordham-Skelton, A, Rovira, C, Davis, B.D. Deposit date: 2016-02-10 Release date: 2017-02-01 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.16 Å) Cite: A front-face 'SNi synthase' engineered from a retaining 'double-SN2' hydrolase. Nat. Chem. Biol., 13, 2017
6Y11	Respiratory complex I from Thermus thermophilus Descriptor: DUF3197 domain-containing protein, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... Authors: Gutierrez-Fernandez, J, Minhas, G.S, Sazanov, L.A. Deposit date: 2020-02-10 Release date: 2020-09-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.109 Å) Cite: Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020

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