PDB: 79225 resultsInfo pagesStatus searchChemie searchBIRD

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3GKR	Crystal Structure of Weissella viridescens FemX:UDP-MurNAc-hexapeptide complex Descriptor: ALANINE, FemX, GLYCEROL, ... Authors: Delfosse, V, Piton, J, Villet, R, Lecerf, M, Arthur, M, Mayer, C. Deposit date: 2009-03-11 Release date: 2010-03-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure of Weissella viridescens FemX with the UDP-MurNAc-hexapeptide product of the alanine transfer reaction To be Published
5XWP	Crystal structure of LbuCas13a-crRNA-target RNA ternary complex Descriptor: RNA (30-MER), RNA (59-MER), Uncharacterized protein Authors: Liu, L, Li, X, Li, Z, Wang, Y. Deposit date: 2017-06-30 Release date: 2017-09-13 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (3.086 Å) Cite: The Molecular Architecture for RNA-Guided RNA Cleavage by Cas13a. Cell, 170, 2017
3CUN	Aminoacyl-tRNA synthetase ribozyme Descriptor: COBALT (II) ION, MAGNESIUM ION, POTASSIUM ION, ... Authors: Xiao, H, Murakami, H, Suga, H, Ferre-D'Amare, A.R. Deposit date: 2008-04-16 Release date: 2008-06-24 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature, 454, 2008
5D0U	Crystal structure of the RNA-helicase Prp43 from Chaetomium thermophilum bound to ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... Authors: Tauchert, M.J, Ficner, R. Deposit date: 2015-08-03 Release date: 2016-02-10 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.919 Å) Cite: Structural and functional analysis of the RNA helicase Prp43 from the thermophilic eukaryote Chaetomium thermophilum. Acta Crystallogr.,Sect.F, 72, 2016
4V5M	tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE) Descriptor: 16S RRNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... Authors: Ratje, A.H, Loerke, J, Mikolajka, A, Bruenner, M, Hildebrand, P.W, Starosta, A.L, Doenhoefer, A, Connell, S.R, Fucini, P, Mielke, T, Whitford, P.C, Onuchic, J.N, Yu, Y, Sanbonmatsu, K.Y, Hartmann, R.K, Penczek, P.A, Wilson, D.N, Spahn, C.M.T. Deposit date: 2010-10-01 Release date: 2014-07-09 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (7.8 Å) Cite: Head Swivel on the Ribosome Facilitates Translocation by Means of Intra-Subunit tRNA Hybrid Sites. Nature, 468, 2010
4V5N	tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST) Descriptor: 16S RRNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... Authors: Ratje, A.H, Loerke, J, Mikolajka, A, Bruenner, M, Hildebrand, P.W, Starosta, A.L, Doenhoefer, A, Connell, S.R, Fucini, P, Mielke, T, Whitford, P.C, Onuchic, J.N, Yu, Y, Sanbonmatsu, K.Y, Hartmann, R.K, Penczek, P.A, Wilson, D.N, Spahn, C.M.T. Deposit date: 2010-10-21 Release date: 2014-07-09 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (7.6 Å) Cite: Head Swivel on the Ribosome Facilitates Translocation by Means of Intra-Subunit tRNA Hybrid Sites. Nature, 468, 2010
6YMC	26-mer stem-loop RNA Descriptor: BARIUM ION, RNA (26-MER) Authors: Janowski, R, Niessing, D. Deposit date: 2020-04-08 Release date: 2022-04-20 Last modified: 2025-03-12 Method: X-RAY DIFFRACTION (2 Å) Cite: Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation. Nucleic Acids Res., 52, 2024
6Y4H	Solution structure of cold-shock domain 7 and 8 of drosophila Upstream of N-Ras (Unr) Descriptor: Upstream of N-ras, isoform A Authors: Hollmann, N.M, Simon, B, Hennig, J. Deposit date: 2020-02-21 Release date: 2020-07-29 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Pseudo-RNA-Binding Domains Mediate RNA Structure Specificity in Upstream of N-Ras. Cell Rep, 32, 2020
8G60	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.54 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G61	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G5Z	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G6J	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) Descriptor: (3R,6R,9S,12S,15S,18S,20R,24aR)-6-[(2S)-butan-2-yl]-3,12-bis[(1R)-1-hydroxy-2-methylpropyl]-8,9,11,17,18-pentamethyl-15-[(2S)-2-methylbutyl]hexadecahydropyrido[1,2-a][1,4,7,10,13,16,19]heptaazacyclohenicosine-1,4,7,10,13,16,19(21H)-heptone, (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 1,4-DIAMINOBUTANE, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-15 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G5Y	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.29 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8GLP	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Watson, Z.L, Altman, R.B, Blanchard, S.C. Deposit date: 2023-03-22 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.67 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
6GZ3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... Authors: Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V. Deposit date: 2018-07-03 Release date: 2018-12-05 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis. Cell Rep, 25, 2018
6GZ5	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... Authors: Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V. Deposit date: 2018-07-03 Release date: 2018-12-05 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis. Cell Rep, 25, 2018
6GZ4	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... Authors: Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V. Deposit date: 2018-07-03 Release date: 2018-12-05 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis. Cell Rep, 25, 2018
7R9F	Wild-type yeast Pseudouridine Synthase, PUS1, bound to 5-Fluorouracil RNA Descriptor: RNA (5'-R(*UP*AP*AP*UP*CP*GP*GP*GP*AP*UP*UP*CP*CP*GP*GP*AP*UP*A)-3'), SULFATE ION, tRNA pseudouridine synthase 1 Authors: Doyle, L.A, Stoddard, B.L. Deposit date: 2021-06-29 Release date: 2021-12-15 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.89 Å) Cite: The structural basis of mRNA recognition and binding by yeast pseudouridine synthase PUS1. Plos One, 18, 2023
6YST	Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V. Deposit date: 2020-04-23 Release date: 2020-08-19 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Mechanism of ribosome rescue by alternative ribosome-rescue factor B. Nat Commun, 11, 2020
6UZ7	K.lactis 80S ribosome with p/PE tRNA and eIF5B Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... Authors: Fernandez, I.S, Huang, B.Y. Deposit date: 2019-11-14 Release date: 2020-01-15 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Long-range interdomain communications in eIF5B regulate GTP hydrolysis and translation initiation. Proc.Natl.Acad.Sci.USA, 117, 2020
4V91	Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES Descriptor: 25S RRNA, 5.8S RRNA, 5S RRNA, ... Authors: Fernandez, I.S, Bai, X, Scheres, S.H.W, Ramakrishnan, V. Deposit date: 2014-03-21 Release date: 2014-07-09 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome. Cell(Cambridge,Mass.), 157, 2014
8D9L	CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA and SAM Descriptor: Lys-tRNA, S-ADENOSYLMETHIONINE, tRNA (guanine-N(7)-)-methyltransferase, ... Authors: Ruiz-Arroyo, V.M, Nam, Y. Deposit date: 2022-06-10 Release date: 2023-01-11 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.04 Å) Cite: Structures and mechanisms of tRNA methylation by METTL1-WDR4. Nature, 613, 2023
3MQK	Cbf5-Nop10-Gar1 complex binding with 17mer RNA containing ACA trinucleotide Descriptor: RNA (5'-R(P*CP*GP*AP*UP*CP*CP*AP*CP*A)-3'), RNA (5'-R(P*GP*UP*UP*CP*GP*AP*UP*CP*CP*AP*CP*AP*G)-3'), Ribosome biogenesis protein Nop10, ... Authors: Zhou, J, Liang, B, Li, H. Deposit date: 2010-04-28 Release date: 2010-12-29 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide. Rna, 17, 2011
4M2Z	Crystal structure of RNASE III complexed with double-stranded RNA and CMP (TYPE II CLEAVAGE) Descriptor: CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA10, ... Authors: Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X. Deposit date: 2013-08-05 Release date: 2013-12-11 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (2.85 Å) Cite: RNase III: Genetics and Function; Structure and Mechanism. Annu. Rev. Genet., 47, 2013
4M30	Crystal structure of RNASE III complexed with double-stranded RNA AND AMP (TYPE II CLEAVAGE) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ... Authors: Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X. Deposit date: 2013-08-05 Release date: 2013-12-11 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.501 Å) Cite: RNase III: Genetics and Function; Structure and Mechanism. Annu. Rev. Genet., 47, 2013

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