PDB: 47065 resultsInfo pagesStatus searchChemie searchBIRD

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6ZQ4	Crystal structure of Chaetomium thermophilum Glycerol Kinase in complex with substrate in P1 space group Descriptor: GLYCEROL, Glycerol kinase-like protein, PHOSPHATE ION Authors: Wilk, P, Wator, E, Grudnik, P. Deposit date: 2020-07-09 Release date: 2020-12-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Structural Characterization of Glycerol Kinase from the Thermophilic Fungus Chaetomium thermophilum . Int J Mol Sci, 21, 2020
3OXX	Crystal Structure of HIV-1 I50V, A71V Protease in Complex with the Protease Inhibitor Atazanavir Descriptor: (3S,8S,9S,12S)-3,12-BIS(1,1-DIMETHYLETHYL)-8-HYDROXY-4,11-DIOXO-9-(PHENYLMETHYL)-6-[[4-(2-PYRIDINYL)PHENYL]METHYL]-2,5, 6,10,13-PENTAAZATETRADECANEDIOIC ACID DIMETHYL ESTER, 1,2-ETHANEDIOL, ... Authors: Schiffer, C.A, Bandaranayake, R.M. Deposit date: 2010-09-22 Release date: 2011-09-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural and thermodynamic basis of amprenavir/darunavir and atazanavir resistance in HIV-1 protease with mutations at residue 50. J.Virol., 87, 2013
3KMQ	G62S mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, tetragonal structure Descriptor: 3D polymerase, RNA (5'-R(*GP*GP*CP*CP*C)-3'), RNA (5'-R(P*GP*GP*GP*CP*C)-3') Authors: Ferrer-Orta, C, Verdaguer, N, Perez-Luque, R. Deposit date: 2009-11-11 Release date: 2010-07-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.11 Å) Cite: Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin J.Virol., 84, 2010
5MYU	VipA-N2/VipB contracted sheath of type VI secretion system Descriptor: Type VI secretion system protein ImpC, Uncharacterized protein Authors: Wang, J, Brackmann, B, Castano-Diez, D, Kudryashev, M, Goldie, D, Maier, T, Stahlberg, H, Basler, M. Deposit date: 2017-01-27 Release date: 2017-08-02 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (4 Å) Cite: Cryo-EM structure of the extended type VI secretion system sheath-tube complex. Nat Microbiol, 2, 2017
1XEN	High Resolution Crystal Structure of Escherichia coli Iron- Peptide Deformylase Bound To Formate Descriptor: FE (III) ION, FORMIC ACID, Peptide deformylase Authors: Jain, R, Hao, B, Liu, R.-P, Chan, M.K. Deposit date: 2004-09-10 Release date: 2005-03-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structures of E. coli peptide deformylase bound to formate: insight into the preference for Fe2+ over Zn2+ as the active site metal J.Am.Chem.Soc., 127, 2005
5N3F	cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule N-[3-(aminomethyl)phenyl]acetamide Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, N-[3-(aminomethyl)phenyl]acetamide, cAMP dependent protein kinase inhibitor alpha-like protein, ... Authors: Siefker, C, Heine, A, Klebe, G. Deposit date: 2017-02-08 Release date: 2018-02-28 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.68 Å) Cite: A crystallographic fragment study with cAMP-dependent protein kinase A To Be Published
1XNQ	Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center Descriptor: 16S ribosomal RNA, Anticodon tRNA, MAGNESIUM ION, ... Authors: Murphy, F.V, Ramakrishnan, V. Deposit date: 2004-10-05 Release date: 2004-12-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nat.Struct.Mol.Biol., 11, 2004
1XI4	Clathrin D6 Coat Descriptor: Clathrin heavy chain, Clathrin light chain A Authors: Fotin, A, Cheng, Y, Sliz, P, Grigorieff, N, Harrison, S.C, Kirchhausen, T, Walz, T. Deposit date: 2004-09-21 Release date: 2004-11-02 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (7.9 Å) Cite: Molecular model for a complete clathrin lattice from electron cryomicroscopy Nature, 432, 2004
3OX3	X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, N-[2-(2-methoxy-1H-dipyrido[2,3-a:3',2'-e]pyrrolizin-11-yl)ethyl]furan-2-carboxamide, Ribosyldihydronicotinamide dehydrogenase [quinone], ... Authors: Pegan, S.D, Sturdy, M, Ferry, G, Delagrange, P, Boutin, J.A, Mesecar, A.D. Deposit date: 2010-09-21 Release date: 2011-05-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-ray structural studies of quinone reductase 2 nanomolar range inhibitors. Protein Sci., 20, 2011
4QVN	yCP beta5-M45V mutant in complex with bortezomib Descriptor: CHLORIDE ION, MAGNESIUM ION, N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE, ... Authors: Huber, E.M, Heinemeyer, W, Groll, M. Deposit date: 2014-07-15 Release date: 2015-02-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Bortezomib-Resistant Mutant Proteasomes: Structural and Biochemical Evaluation with Carfilzomib and ONX 0914. Structure, 23, 2015
7BEL	Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in a ternary complex with COVOX-88 and COVOX-45 Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, COVOX-45 heavy chain, ... Authors: Zhou, D, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2020-12-23 Release date: 2021-03-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.53 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
4QWF	yCP beta5-M45I mutant in complex with carfilzomib Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ... Authors: Huber, E.M, Heinemeyer, W, Groll, M. Deposit date: 2014-07-16 Release date: 2015-02-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Bortezomib-Resistant Mutant Proteasomes: Structural and Biochemical Evaluation with Carfilzomib and ONX 0914. Structure, 23, 2015
3HLO	Crystal structure of chemically synthesized 'covalent dimer' [Gly51/D-Ala51']HIV-1 protease Descriptor: 'covalent dimer' [Gly51/D-Ala51'] HIV-1 protease, N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide Authors: Torbeev, V.Y, Kent, S.B.H. Deposit date: 2009-05-27 Release date: 2011-07-27 Last modified: 2012-12-12 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Protein conformational dynamics in the mechanism of HIV-1 protease catalysis. Proc.Natl.Acad.Sci.USA, 108, 2011
4P2O	Crystal structure of the 2B4 TCR in complex with 2A/I-Ek Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2A peptide, 2B4 T-cell receptor alpha chain, ... Authors: Birnbaum, M.E, Ozkan, E, Garcia, K.C. Deposit date: 2014-03-04 Release date: 2014-05-21 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.603 Å) Cite: Deconstructing the Peptide-MHC Specificity of T Cell Recognition. Cell, 157, 2014
3HM3	The Structure and conformation of Lys-63 linked tetra-ubiquitin Descriptor: Ubiquitin, ZINC ION Authors: Datta, A.B, Hura, G.L, Wolberger, C. Deposit date: 2009-05-28 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.96 Å) Cite: The structure and conformation of Lys63-linked tetraubiquitin. J.Mol.Biol., 392, 2009
4FJC	Structure of the SAGA Ubp8/Sgf11(1-72, Delta-ZnF)/Sus1/Sgf73 DUB module Descriptor: GLYCEROL, Protein SUS1, SAGA-associated factor 11, ... Authors: Samara, N.L, Ringel, A.E, Wolberger, C. Deposit date: 2012-06-11 Release date: 2012-07-25 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.826 Å) Cite: A Role for Intersubunit Interactions in Maintaining SAGA Deubiquitinating Module Structure and Activity. Structure, 20, 2012
3PAW	Low resolution X-ray crystal structure of Yeast Rnr1p with dATP bound in the A-site Descriptor: Ribonucleoside-diphosphate reductase large chain 1 Authors: Fairman, J.W, Wijerathna, S.R, Dealwis, C.G. Deposit date: 2010-10-19 Release date: 2011-02-23 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (6.61 Å) Cite: Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization. Nat.Struct.Mol.Biol., 18, 2011
1XY7	X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G48480 Descriptor: unknown protein Authors: Wesenberg, G.E, Phillips Jr, G.N, Bitto, E, Bingman, C.A, Allard, S.T.M, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2004-11-09 Release date: 2004-11-16 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G48480 To be Published
3PAA	Mechanism of inactivation of E. coli aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid (S-ADFA) pH 8.0 Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, 4-aminofuran-2-carboxylic acid, Aspartate aminotransferase, ... Authors: Liu, D, Pozharski, E, Fu, M, Silverman, R.B, Ringe, D. Deposit date: 2010-10-19 Release date: 2010-12-01 Last modified: 2019-07-17 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Mechanism of inactivation of Escherichia coli aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid . Biochemistry, 49, 2010
1XMQ	Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center Descriptor: 16s ribosomal RNA, 30S Ribosomal Protein S10, 30S Ribosomal Protein S11, ... Authors: Murphy, F.V, Ramakrishnan, V, Malkiewicz, A, Agris, P.F. Deposit date: 2004-10-04 Release date: 2004-12-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: The role of modifications in codon discrimination by tRNA(Lys)(UUU). Nat.Struct.Mol.Biol., 11, 2004
4FQY	Crystal structure of broadly neutralizing antibody CR9114 bound to H3 influenza hemagglutinin Descriptor: Antibody CR9114 heavy chain, Antibody CR9114 light chain, Hemagglutinin HA1, ... Authors: Ekiert, D.C, Dreyfus, C, Wilson, I.A. Deposit date: 2012-06-25 Release date: 2012-08-22 Last modified: 2018-01-31 Method: X-RAY DIFFRACTION (5.253 Å) Cite: Highly conserved protective epitopes on influenza B viruses. Science, 337, 2012
4FW2	Crystal structure of RSV three-domain integrase with disordered N-terminal domain Descriptor: Integrase Authors: Shi, K, Aihara, H. Deposit date: 2012-06-29 Release date: 2013-05-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.65 Å) Cite: A possible role for the asymmetric C-terminal domain dimer of Rous sarcoma virus integrase in viral DNA binding. Plos One, 8, 2013
3OKJ	Alpha-keto-aldehyde binding mechanism reveals a novel lead structure motif for proteasome inhibition Descriptor: N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S,3S)-3-hydroxy-1-(4-hydroxyphenyl)-4-oxobutan-2-yl]-L-leucinamide, Proteasome component C1, Proteasome component C11, ... Authors: Groll, M, Poynor, M, Gallastegui, P, Stein, M, Schmidt, B, Kloetzel, P.M, Huber, R. Deposit date: 2010-08-25 Release date: 2011-06-08 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Elucidation of the alpha-keto-aldehyde binding mechanism: a lead structure motif for proteasome inhibition Angew.Chem.Int.Ed.Engl., 50, 2011
3P0A	X-ray structure of pentameric HIV-1 CA Descriptor: HIV-1 CA Authors: Pornillos, O. Deposit date: 2010-09-27 Release date: 2011-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (5.954 Å) Cite: Atomic-level modelling of the HIV capsid. Nature, 469, 2011
3I4U	Crystal Structure Analysis of a helicase associated domain Descriptor: ATP-dependent RNA helicase DHX8, BROMIDE ION, GLYCEROL Authors: Kudlinzki, D, Ficner, R. Deposit date: 2009-07-02 Release date: 2010-07-07 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural analysis of the C-terminal domain of the spliceosomal helicase Prp22 Biol.Chem., 393, 2012

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