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5X51	RNA Polymerase II from Komagataella Pastoris (Type-3 crystal) Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... Authors: Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. Deposit date: 2017-02-14 Release date: 2017-05-17 Method: X-RAY DIFFRACTION (6.996 Å) Cite: Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
5M3J	Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD Descriptor: DNA-directed RNA polymerase subunit, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Lukarska, M, Pflug, A, Cusack, S. Deposit date: 2016-10-14 Release date: 2016-12-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of an essential interaction between influenza polymerase and Pol II CTD. Nature, 541, 2017
5X4Z	RNA Polymerase II from Komagataella Pastoris (Type-1 crystal) Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... Authors: Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. Deposit date: 2017-02-14 Release date: 2017-05-17 Method: X-RAY DIFFRACTION (7.8 Å) Cite: Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
8A3Y	Structure of mammalian Pol II-DSIF-SPT6-PAF1-TFIIS-hexasome elongation complex Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Farnung, L, Ochmann, M, Garg, G, Vos, S.M, Cramer, P. Deposit date: 2022-06-09 Release date: 2024-07-31 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structure of a backtracked hexasomal intermediate of nucleosome transcription. Mol.Cell, 82, 2022
2B8K	12-subunit RNA Polymerase II Descriptor: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, ... Authors: Meyer, P.A, Ye, P, Zhang, M, Suh, M.H, Fu, J. Deposit date: 2005-10-07 Release date: 2006-06-20 Last modified: 2012-06-13 Method: X-RAY DIFFRACTION (4.15 Å) Cite: Phasing RNA Polymerase II Using Intrinsically Bound Zn Atoms: An Updated Structural Model. Structure, 14, 2006
5X50	RNA Polymerase II from Komagataella Pastoris (Type-2 crystal) Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... Authors: Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. Deposit date: 2017-02-14 Release date: 2017-05-17 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (4.293 Å) Cite: Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
7Z0H	Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.6 A (focus subunit AC40). Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Nguyen, P.Q, Huecas, S, Plaza-Pegueroles, A, Fernandez-Tornero, C. Deposit date: 2022-02-22 Release date: 2023-04-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun, 14, 2023
7Z31	Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.7 A (focus subunit C11, no C11 C-terminal Zn-ribbon in the funnel pore). Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Nguyen, P.Q, Huecas, S, Plaza-Pegueroles, A, Fernandez-Tornero, C. Deposit date: 2022-03-01 Release date: 2023-04-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun, 14, 2023
7Z30	Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.9 A (focus subunit C11 terminal Zn-ribbon in the funnel pore). Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Nguyen, P.Q, Fernandez-Tornero, C. Deposit date: 2022-03-01 Release date: 2023-04-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun, 14, 2023
1P7H	Structure of NFAT1 bound as a dimer to the HIV-1 LTR kB element Descriptor: 5'-D(*AP*AP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*A)-3', 5'-D(*TP*TP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*A)-3', Nuclear factor of activated T-cells, ... Authors: Giffin, M.J, Stroud, J.C, Bates, D.L, von Koenig, K.D, Hardin, J, Chen, L. Deposit date: 2003-05-01 Release date: 2003-09-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of NFAT1 bound as a dimer to the HIV-1 LTR kappa B element Nat.Struct.Biol., 10, 2003
7Z8Q	Cryo-EM structure of Mycobacterium tuberculosis RNA polymerase core Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Brodolin, K. Deposit date: 2022-03-18 Release date: 2023-02-08 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.08 Å) Cite: Structural basis of the mycobacterial stress-response RNA polymerase auto-inhibition via oligomerization Nat Commun, 14, 2023
3THN	Crystal structure of Mre11 core with manganese Descriptor: Exonuclease, putative, MANGANESE (II) ION, ... Authors: Moeckel, C, Lammens, K. Deposit date: 2011-08-19 Release date: 2011-10-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.811 Å) Cite: ATP driven structural changes of the bacterial Mre11:Rad50 catalytic head complex. Nucleic Acids Res., 40, 2012
2PMZ	Archaeal RNA polymerase from Sulfolobus solfataricus Descriptor: DNA-directed RNA polymerase subunit A, DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit B, ... Authors: Murakami, K.S. Deposit date: 2007-04-23 Release date: 2008-02-12 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea Nature, 451, 2008
8A40	Structure of mammalian Pol II-TFIIS elongation complex Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Farnung, L, Ochmann, M, Garg, G, Vos, S.M, Cramer, P. Deposit date: 2022-06-09 Release date: 2023-08-23 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure of a backtracked hexasomal intermediate of nucleosome transcription. Mol.Cell, 82, 2022
6I84	Structure of transcribing RNA polymerase II-nucleosome complex Descriptor: DNA (158-MER), DNA (170-MER), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Farnung, L, Vos, S.M, Cramer, P. Deposit date: 2018-11-19 Release date: 2019-01-02 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structure of transcribing RNA polymerase II-nucleosome complex. Nat Commun, 9, 2018
2Y0S	Crystal structure of Sulfolobus shibatae RNA polymerase in P21 space group Descriptor: DNA-DIRECTED RNA POLYMERASE, DNA-DIRECTED RNA POLYMERASE SUBUNIT A'', DNA-DIRECTED RNA POLYMERASE SUBUNIT D, ... Authors: Wojtas, M, Peralta, B, Ondiviela, M, Mogni, M, Bell, S.D, Abrescia, N.G.A. Deposit date: 2010-12-07 Release date: 2011-02-16 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Archaeal RNA polymerase: the influence of the protruding stalk in crystal packing and preliminary biophysical analysis of the Rpo13 subunit. Biochem. Soc. Trans., 39, 2011
3LTI	Crystal structure of the Escherichia coli RNA polymerase beta subunit beta2-betai4 domains Descriptor: DNA-directed RNA polymerase subunit beta Authors: Darst, S.A, Opalka, N. Deposit date: 2010-02-16 Release date: 2010-10-20 Last modified: 2012-02-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. Plos Biol., 8, 2010
4TZ4	Crystal Structure of Human Cereblon in Complex with DDB1 and Lenalidomide Descriptor: DNA damage-binding protein 1, Protein cereblon, S-Lenalidomide, ... Authors: Chamberlain, P.P, Pagarigan, B, Delker, S, Leon, B, Riley, M. Deposit date: 2014-07-09 Release date: 2014-08-06 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Structural Basis for Responsiveness to Thalidomide-Analog Drugs Defined by the Crystal Structure of the Human Cereblon:DDB1:Lenalidomide Complex To Be Published
8P0K	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex, module 2 of capping enzyme mobile Descriptor: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... Authors: Grimm, C, Jungwirth, S, Fischer, U. Deposit date: 2023-05-10 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
5ODN	Salinibacter ruber Single-Strand Binding protein Descriptor: DNA (5'-D(*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*T)-3'), Single-stranded DNA-binding protein Authors: Pierechod, M, Rothweiler, U. Deposit date: 2017-07-06 Release date: 2018-08-01 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.598 Å) Cite: Salinibacter ruber Single-Strand Binding protein To Be Published
9IMJ	Bacteriophage T6 topoisomerase II ATPase domain crystal strcuture Descriptor: DNA topoisomerase (ATP-hydrolyzing), MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Xin, Y.H, Chen, Y.T. Deposit date: 2024-07-03 Release date: 2024-09-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Bacteriophage T6 topoisomerase II ATPase domain crystal strcuture To be published
9IPU	cryo-EM structure of the RNF168(1-193)/UbcH5c-Ub ubiquitylation module bound to H1.0-K63-Ub3 modified chromatosome Descriptor: DNA (171-MER), E3 ubiquitin-protein ligase RNF168, Histone H1.0, ... Authors: Ai, H.S, Deng, Z.H, Liu, L. Deposit date: 2024-07-11 Release date: 2024-10-02 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Chemically and Site-specifically Ubiquitylated Linker Histone H1 Facilitates RNF168-Mediated Nucleosomal H2A Ubiquitylation To Be Published
4QJF	X-ray crystal structure of Thermocuccus kodakarensis RNA polymerase Rpp4/Rpo7 (RpoF/RpoE) complex Descriptor: DNA-directed RNA polymerase, subunit E', subunit F Authors: Murakami, K.S. Deposit date: 2014-06-03 Release date: 2014-10-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.312 Å) Cite: Crystal structure of euryarchaeal RNA polymerase and insight into the evolution of RNA polymerase II structure Nat.Commun., 2014
2NVY	RNA Polymerase II form II in 150 mM Mn+2 Descriptor: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, ... Authors: Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D. Deposit date: 2006-11-13 Release date: 2006-12-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.), 127, 2006
1GO3	Structure of an archeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex Descriptor: DNA-DIRECTED RNA POLYMERASE SUBUNIT E, DNA-DIRECTED RNA POLYMERASE SUBUNIT F Authors: Todone, F, Brick, P, Werner, F, Weinzierl, R.O.J, Onesti, S. Deposit date: 2001-10-17 Release date: 2001-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure of an Archaeal Homolog of the Eukaryotic RNA Polymerase II Rpb4/Rpb7 Complex Mol.Cell, 8, 2001

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