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6K0N
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BU of 6k0n by Molmil
Catalytic domain of GH87 alpha-1,3-glucanase in complex with nigerose
Descriptor: ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ...
Authors:Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
Deposit date:2019-05-07
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
4CCT
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BU of 4cct by Molmil
Dengue 1 cryo-EM reconstruction
Descriptor: DENGUE VIRUS 1 E PROTEIN, DENGUE VIRUS 1 M PROTEIN
Authors:Kostyuchenko, V.A, Zhang, Q, Tan, J.L, Ng, T.S, Lok, S.M.
Deposit date:2013-10-28
Release date:2013-11-06
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Immature and Mature Dengue Serotype 1 Virus Structures Provide Insight Into the Maturation Process.
J.Virol., 87, 2013
2R8O
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BU of 2r8o by Molmil
Transketolase from E. coli in complex with substrate D-xylulose-5-phosphate
Descriptor: 1,2-ETHANEDIOL, 2-C-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thia zol-3-ium-2-yl}-5-O-phosphono-D-xylitol, CALCIUM ION, ...
Authors:Wille, G, Asztalos, P, Weiss, M.S, Tittmann, K.
Deposit date:2007-09-11
Release date:2007-12-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Strain and near attack conformers in enzymic thiamin catalysis: X-ray crystallographic snapshots of bacterial transketolase in covalent complex with donor ketoses xylulose 5-phosphate and fructose 6-phosphate, and in noncovalent complex with acceptor aldose ribose 5-phosphate.
Biochemistry, 46, 2007
3UG3
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BU of 3ug3 by Molmil
Crystal structure of alpha-L-arabinofuranosidase from Thermotoga maritima ligand free form
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-L-arabinofuranosidase, ...
Authors:Im, D.-H, Miyazaki, K, Wakagi, T, Fushinobu, S.
Deposit date:2011-11-02
Release date:2012-03-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Glycoside Hydrolase Family 51 alpha-L-Arabinofuranosidase from Thermotoga maritima
Biosci.Biotechnol.Biochem., 76, 2012
2RK4
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BU of 2rk4 by Molmil
Structure of M26I DJ-1
Descriptor: Protein DJ-1
Authors:Lakshminarasimhan, M, Maldonado, M.T, Zhou, W, Fink, A.L, Wilson, M.A.
Deposit date:2007-10-16
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1.
Biochemistry, 47, 2008
1NPU
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BU of 1npu by Molmil
CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF MURINE PD-1
Descriptor: Programmed cell death protein 1
Authors:Zhang, X, Schwartz, J.-C.D, Guo, X, Cao, E, Chen, L, Zhang, Z.-Y, Nathenson, S.G, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2003-01-20
Release date:2004-03-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and functional analysis of the costimulatory receptor programmed death-1.
Immunity, 20, 2004
2MQ4
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BU of 2mq4 by Molmil
Cysteine Deleted Protegrin-1 (CDP-1): Anti-bacterial Activity, Outer-Membrane Disruption and Selectivity
Descriptor: RR11 peptide from Cysteine Deleted Protegrin-1
Authors:Mohanram, H, Bhattacharjya, S.
Deposit date:2014-06-12
Release date:2014-07-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Cysteine deleted protegrin-1 (CDP-1): anti-bacterial activity, outer-membrane disruption and selectivity.
Biochim.Biophys.Acta, 1840, 2014
4OTQ
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BU of 4otq by Molmil
Crystal structure of BTK kinase domain complexed with 1-[5-[3-(7-tert-butyl-4-oxo-quinazolin-3-yl)-2-methyl-phenyl]-1-methyl-2-oxo-3-pyridyl]-3-methyl-urea
Descriptor: 1-{5-[3-(7-tert-butyl-4-oxoquinazolin-3(4H)-yl)-2-methylphenyl]-1-methyl-2-oxo-1,2-dihydropyridin-3-yl}-3-methylurea, DIMETHYL SULFOXIDE, Tyrosine-protein kinase BTK
Authors:Kuglstatter, A, Wong, A.
Deposit date:2014-02-14
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-Based Drug Design of RN486, a Potent and Selective Bruton's Tyrosine Kinase (BTK) Inhibitor, for the Treatment of Rheumatoid Arthritis.
J.Med.Chem., 58, 2015
1NU3
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BU of 1nu3 by Molmil
Limonene-1,2-epoxide hydrolase in complex with valpromide
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-PROPYLPENTANAMIDE, limonene-1,2-epoxide hydrolase
Authors:Arand, M, Hallberg, B.M, Zou, J, Bergfors, T, Oesch, F, van der Werf, M.J, de Bont, J.A.M, Jones, T.A, Mowbray, S.L.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of Rhodococcus erythropolis limonene-1,2-epoxide hydrolase reveals a novel active site
EMBO J., 22, 2003
4OLY
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BU of 4oly by Molmil
Crystal structure of antibody VRC07-G54R in complex with clade A/E 93TH057 HIV-1 gp120 core
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen binding fragment of heavy chain: Antibody VRC01, Antigen binding fragment of light chain: Antibody VRC01, ...
Authors:Kwon, Y.D, Kwong, P.D.
Deposit date:2014-01-25
Release date:2014-09-03
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Enhanced Potency of a Broadly Neutralizing HIV-1 Antibody In Vitro Improves Protection against Lentiviral Infection In Vivo.
J.Virol., 88, 2014
6K0S
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BU of 6k0s by Molmil
Catalytic domain of GH87 alpha-1,3-glucanase D1069A in complex with nigerose
Descriptor: ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ...
Authors:Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
Deposit date:2019-05-07
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.534 Å)
Cite:Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
4OR2
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BU of 4or2 by Molmil
Human class C G protein-coupled metabotropic glutamate receptor 1 in complex with a negative allosteric modulator
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-fluoro-N-methyl-N-{4-[6-(propan-2-ylamino)pyrimidin-4-yl]-1,3-thiazol-2-yl}benzamide, CHOLESTEROL, ...
Authors:Wu, H, Wang, C, Gregory, K.J, Han, G.W, Cho, H.P, Xia, Y, Niswender, C.M, Katritch, V, Cherezov, V, Conn, P.J, Stevens, R.C, GPCR Network (GPCR)
Deposit date:2014-02-10
Release date:2014-03-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a class C GPCR metabotropic glutamate receptor 1 bound to an allosteric modulator
Science, 344, 2014
3LAS
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BU of 3las by Molmil
Crystal structure of carbonic anhydrase from streptococcus mutans to 1.4 angstrom resolution
Descriptor: GLYCEROL, GUANIDINE, MAGNESIUM ION, ...
Authors:Ma, L.-L, Wang, K.-T, Liu, X, Su, X.-D.
Deposit date:2010-01-07
Release date:2011-01-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of carbonic anhydrase from streptococcus mutans to 1.4 angstrom resolution
To be published
2MSN
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BU of 2msn by Molmil
NMR structure of a putative phosphoglycolate phosphatase (NP_346487.1) from Streptococcus pneumoniae TIGR4
Descriptor: Hydrolase, haloacid dehalogenase-like family
Authors:Jaudzems, K, Serrano, P, Pedrini, B, Geralt, M, Wuthrich, K, Joint Center for Structural Genomics (JCSG)
Deposit date:2014-08-04
Release date:2014-09-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:J-UNIO protocol used for NMR structure determination of the 206-residue protein NP_346487.1 from Streptococcus pneumoniae TIGR4.
J.Biomol.Nmr, 61, 2015
3W0W
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BU of 3w0w by Molmil
The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide in space group P212121
Descriptor: 10-mer peptide from Protein Nef, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A.
Deposit date:2012-11-05
Release date:2013-11-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
4OQN
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BU of 4oqn by Molmil
Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with EdU
Descriptor: 2'-deoxy-5-ethynyluridine, SULFATE ION, Thymidine kinase
Authors:Pernot, L, Neef, A.B, Westermaier, Y, Perozzo, R, Luedtke, N.W, Scapozza, L.
Deposit date:2014-02-10
Release date:2014-08-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with EdU
To be Published
2TSS
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BU of 2tss by Molmil
TOXIC SHOCK SYNDROME TOXIN-1 FROM STAPHYLOCOCCUS AUREUS: ORTHORHOMBICC222(1) CRYSTAL FORM
Descriptor: TOXIC SHOCK SYNDROME TOXIN-1
Authors:Prasad, G.S, Radhakrishnan, R, Mitchell, D.T, Earhart, C.A, Dinges, M.M, Cook, W.J, Schlivert, P.M, Ohlendorf, D.H.
Deposit date:1996-12-04
Release date:1997-12-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Refined structures of three crystal forms of toxic shock syndrome toxin-1 and of a tetramutant with reduced activity.
Protein Sci., 6, 1997
2UPJ
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BU of 2upj by Molmil
HIV-1 PROTEASE COMPLEX WITH U100313 ([3-[[3-[CYCLOPROPYL [4-HYDROXY-2OXO-6-[1-(PHENYLMETHYL)PROPYL]-2H-PYRAN-3-YL] METHYL]PHENYL]AMINO]-3-OXO-PROPYL]CARBAMIC ACID TERT-BUTYL ESTER)
Descriptor: HIV-1 PROTEASE, [2-(3-{[6-(1-BENZYL-PROPYL)-4-HYDROXY-2-OXO-2H-PYRAN-3-YL]-CYCLOPROPYL-METHYL}-PHENYLCARBAMOYL)-ETHYL]-CARBAMIC ACID TERT-BUTYL ESTER
Authors:Watenpaugh, K.D, Mulichak, A.M, Janakiraman, M.N.
Deposit date:1996-03-04
Release date:1996-10-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-based design of novel HIV protease inhibitors: carboxamide-containing 4-hydroxycoumarins and 4-hydroxy-2-pyrones as potent nonpeptidic inhibitors.
J.Med.Chem., 38, 1995
4BDY
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BU of 4bdy by Molmil
PFV intasome with inhibitor XZ-89
Descriptor: 17 NUCLEOTIDE PREPROCESSED PFV DONOR DNA (TRANSFERRED STRAND), 19 NUCLEOTIDE PREPROCESSED PFV DONOR DNA (NON-TRANSFERRED STRAND), 2-(3-chloro-4-fluorobenzyl)-4,5-dihydroxy-1H-isoindole-1,3(2H)-dione, ...
Authors:Hare, S, Cherepanov, P.
Deposit date:2012-10-08
Release date:2012-10-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Activities, Crystal Structures and Molecular Dynamics of Dihydro-1H-Isoindole Derivatives, Inhibitors of HIV-1 Integrase.
Acs Chem.Biol., 8, 2013
3LP6
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BU of 3lp6 by Molmil
Crystal Structure of Rv3275c-E60A from Mycobacterium tuberculosis at 1.7A resolution
Descriptor: FORMIC ACID, GLYCEROL, Phosphoribosylaminoimidazole carboxylase catalytic subunit
Authors:Kim, H, Yu, M, Hung, L.-W, Terwilliger, T.C, Kim, C.-Y, Integrated Center for Structure and Function Innovation (ISFI), TB Structural Genomics Consortium (TBSGC)
Deposit date:2010-02-04
Release date:2010-06-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal Structure of Rv3275c-E60A from Mycobacterium tuberculosis at 1.7A Resolution
To be Published
4IXD
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BU of 4ixd by Molmil
X-ray structure of lfa-1 i-domain in complex with ibe-667 at 1.8a resolution
Descriptor: 4-(3-{4-[(3-aminopropyl)carbamoyl]phenyl}-1H-indazol-1-yl)-N-methylbenzamide, Integrin alpha-L, MAGNESIUM ION
Authors:Kallen, J.
Deposit date:2013-01-25
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification and x-ray structure based investigation of an ICAM-1 binding enhancing small molecule activator of LFA-1
To be Published, 2013
4OXB
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BU of 4oxb by Molmil
Structure of ECP with sulphate anions at 1.50 Angstroms
Descriptor: Eosinophil cationic protein, SULFATE ION
Authors:Blanco, J.A, Boix, E, Moussaoui, M.
Deposit date:2014-02-05
Release date:2015-03-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of ECP at 1.50 with sulphate anions at 1.50 Angstroms
To be published
5NY3
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BU of 5ny3 by Molmil
Carbonic Anhydrase II Inhibitor RA11
Descriptor: 1-(4-chlorophenyl)-3-[2-(4-sulfamoylphenyl)ethyl]urea, Carbonic anhydrase 2, ZINC ION
Authors:Brynda, J, Rezacova, P, Horejsi, M, Fanfrlik, J.
Deposit date:2017-05-11
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Ranking Power of the SQM/COSMO Scoring Function on Carbonic Anhydrase II-Inhibitor Complexes.
Chemphyschem, 19, 2018
4J4A
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BU of 4j4a by Molmil
Crystal Structure of Engineered Trimeric Cortexillin-1 Coiled-Coil Variant
Descriptor: Cortexillin-1, PHOSPHATE ION
Authors:Bjelic, S, Steinmetz, M.O, Kammerer, R.A.
Deposit date:2013-02-06
Release date:2013-05-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6499 Å)
Cite:Structural basis for the oligomerization-state switch from a dimer to a trimer of an engineered cortexillin-1 coiled-coil variant.
Plos One, 8, 2013
2DE4
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BU of 2de4 by Molmil
Crystal structure of DSZB C27S mutant in complex with biphenyl-2-sulfinic acid
Descriptor: 1,1'-BIPHENYL-2-SULFINIC ACID, ACETATE ION, DIBENZOTHIOPHENE DESULFURIZATION ENZYME B
Authors:Lee, W.C, Ohshiro, T, Matsubara, T, Izumi, Y, Tanokura, M.
Deposit date:2006-02-08
Release date:2006-08-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure and desulfurization mechanism of 2'-hydroxybiphenyl-2-sulfinic acid desulfinase.
J.Biol.Chem., 281, 2006

243531

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