Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2Q89
DownloadVisualize
BU of 2q89 by Molmil
Crystal structure of EhuB in complex with hydroxyectoine
Descriptor: (4S,5S)-5-HYDROXY-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID, CADMIUM ION, Putative ABC transporter amino acid-binding protein
Authors:Hanekop, N, Hoeing, M, Sohn-Bosser, L, Jebbar, M, Schmitt, L, Bremer, E.
Deposit date:2007-06-09
Release date:2008-01-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the ligand-binding protein EhuB from Sinorhizobium meliloti reveals substrate recognition of the compatible solutes ectoine and hydroxyectoine.
J.Mol.Biol., 374, 2007
3FDH
DownloadVisualize
BU of 3fdh by Molmil
Crystal structure of a susd/ragb family protein (bt_2033) from bacteroides thetaiotaomicron vpi-5482 at 1.75 A resolution
Descriptor: SusD homolog, TETRAETHYLENE GLYCOL
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-11-25
Release date:2008-12-16
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of SusD homolog (NP_810946.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.75 A resolution
To be Published
4GFC
DownloadVisualize
BU of 4gfc by Molmil
N-terminal coiled-coil dimer of C.elegans SAS-6, crystal form B
Descriptor: 1,2-ETHANEDIOL, IMIDAZOLE, Spindle assembly abnormal protein 6, ...
Authors:Erat, M.C, Vakonakis, I.
Deposit date:2012-08-03
Release date:2013-06-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry.
Proc.Natl.Acad.Sci.USA, 110, 2013
2Q9E
DownloadVisualize
BU of 2q9e by Molmil
Structure of spin-labeled T4 lysozyme mutant S44R1
Descriptor: 2-HYDROXYETHYL DISULFIDE, Lysozyme, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
Authors:Guo, Z, Cascio, D, Hideg, K, Hubbell, W.L.
Deposit date:2007-06-12
Release date:2007-06-26
Last modified:2023-08-30
Method:EPR (2.1 Å), X-RAY DIFFRACTION
Cite:Structural determinants of nitroxide motion in spin-labeled proteins: Solvent-exposed sites in helix B of T4 lysozyme.
Protein Sci., 17, 2008
3V2L
DownloadVisualize
BU of 3v2l by Molmil
Structure of Anopheles gambiae odorant binding protein 20 bound to polyethylene glycol
Descriptor: AGAP005208-PA, TETRAETHYLENE GLYCOL
Authors:Ziemba, B.P, Jones, D.N.
Deposit date:2011-12-12
Release date:2012-10-17
Last modified:2012-12-26
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A novel mechanism of ligand binding and release in the odorant binding protein 20 from the malaria mosquito Anopheles gambiae.
Protein Sci., 22, 2013
4GMS
DownloadVisualize
BU of 4gms by Molmil
Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab S139/1 heavy chain, ...
Authors:Lee, P.S, Ekiert, D.C, Wilson, I.A.
Deposit date:2012-08-16
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Heterosubtypic antibody recognition of the influenza virus hemagglutinin receptor binding site enhanced by avidity.
Proc.Natl.Acad.Sci.USA, 109, 2012
3FP8
DownloadVisualize
BU of 3fp8 by Molmil
Anionic trypsin variant S195A in complex with bovine pancreatic trypsin inhibitor (BPTI) determined to the 1.46 A resolution limit
Descriptor: 1,2-ETHANEDIOL, Anionic trypsin-2, CALCIUM ION, ...
Authors:Zakharova, E, Horvath, M.P, Goldenberg, D.P, Curtice, K.
Deposit date:2009-01-04
Release date:2009-02-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Structure of a serine protease poised to resynthesize a peptide bond.
Proc.Natl.Acad.Sci.USA, 106, 2009
5RWC
DownloadVisualize
BU of 5rwc by Molmil
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434879
Descriptor: 2-[(4-methyl-1H-imidazol-5-yl)methyl]-1,2,3,4-tetrahydroisoquinoline, DIMETHYL SULFOXIDE, Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1
Authors:Bradshaw, W.J, Newman, J.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Gileadi, O.
Deposit date:2020-10-30
Release date:2020-11-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2.
Structure, 2024
3F29
DownloadVisualize
BU of 3f29 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with sulfite
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2008-10-29
Release date:2008-12-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of sulfite by the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase
To be Published
2QBQ
DownloadVisualize
BU of 2qbq by Molmil
Crystal structure of ptp1b-inhibitor complex
Descriptor: 4-BROMO-3-(CARBOXYMETHOXY)-5-{3-[(3,3,5,5-TETRAMETHYLCYCLOHEXYL)AMINO]PHENYL}THIOPHENE-2-CARBOXYLIC ACID, Tyrosine-protein phosphatase non-receptor type 1
Authors:Xu, W.
Deposit date:2007-06-18
Release date:2008-03-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based optimization of protein tyrosine phosphatase 1B inhibitors: from the active site to the second phosphotyrosine binding site.
J.Med.Chem., 50, 2007
3F92
DownloadVisualize
BU of 3f92 by Molmil
Crystal structure of ubiquitin-conjugating enzyme E2-25kDa (Huntington Interacting Protein 2) M172A mutant crystallized at pH 8.5
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CALCIUM ION, ...
Authors:Wilson, R.C, Hughes, R.C, Flatt, J.W, Meehan, E.J, Ng, J.D, Twigg, P.D.
Deposit date:2008-11-13
Release date:2008-11-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structure of full-length ubiquitin-conjugating enzyme E2-25K (huntingtin-interacting protein 2).
Acta Crystallogr.,Sect.F, 65, 2009
3C7E
DownloadVisualize
BU of 3c7e by Molmil
Crystal structure of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase from Bacillus subtilis.
Descriptor: CALCIUM ION, Endo-1,4-beta-xylanase, FORMIC ACID, ...
Authors:Vandermarliere, E, Bourgois, T.M, Winn, M.D, Van Campenhout, S, Volckaert, G, Strelkov, S.V, Delcour, J.A, Rabijns, A, Courtin, C.M.
Deposit date:2008-02-07
Release date:2008-11-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase in complex with xylotetraose reveals a different binding mechanism compared with other members of the same family.
Biochem.J., 418, 2009
1YIL
DownloadVisualize
BU of 1yil by Molmil
Structure of Hen egg white lysozyme soaked with Cu2-Xylylbicyclam
Descriptor: 1,1'-[1,4-PHENYLENEBIS(METHYLENE)]BIS[1,4,8,11-TETRAAZA-CYCLOTETRADECANE]CU(II)2, CHLORIDE ION, Lysozyme C, ...
Authors:Hunter, T.M, McNae, I.W, Liang, X, Bella, J, Parsons, S, Walkinshaw, M.D, Sadler, P.J.
Deposit date:2005-01-12
Release date:2005-02-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Protein recognition of macrocycles: binding of anti-HIV metallocyclams to lysozyme
Proc.Natl.Acad.Sci.Usa, 102, 2005
4G61
DownloadVisualize
BU of 4g61 by Molmil
Crystal structure of IMPase/NADP phosphatase complexed with Mg2+ and phosphate
Descriptor: 1-HYDROXYSULFANYL-4-MERCAPTO-BUTANE-2,3-DIOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, ...
Authors:Bhattacharyya, S, Dutta, D, Ghosh, A.K, Das, A.K.
Deposit date:2012-07-18
Release date:2013-07-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural elucidation of the binding site and mode of inhibition of Li(+) and Mg(2+) in inositol monophosphatase.
Febs J., 281, 2014
2ZJY
DownloadVisualize
BU of 2zjy by Molmil
Structure of the K349P mutant of Gi alpha 1 subunit bound to ALF4 and GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Guanine nucleotide-binding protein G(i), alpha-1 subunit, ...
Authors:Morikawa, T, Muroya, A, Sugio, S, Wakamatsu, K, Kohno, T.
Deposit date:2008-03-11
Release date:2009-03-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:How GPCRs activate G proteins: Structural changes form C-terminal tail to GDP binding pocket
To be Published
3GIQ
DownloadVisualize
BU of 3giq by Molmil
Crystal structure of N-acyl-D-Glutamate Deacylase from Bordetella Bronchiseptica complexed with zinc and phosphonate inhibitor, a mimic of the reaction tetrahedral intermediate.
Descriptor: N-[(R)-hydroxy(methyl)phosphoryl]-D-glutamic acid, N-acyl-D-glutamate deacylase, ZINC ION
Authors:Fedorov, A.A, Fedorov, E.V, Cummings, J, Raushel, F.M, Almo, S.C.
Deposit date:2009-03-05
Release date:2009-09-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Annotating enzymes of uncertain function: the deacylation of D-amino acids by members of the amidohydrolase superfamily.
Biochemistry, 48, 2009
2Q5K
DownloadVisualize
BU of 2q5k by Molmil
Crystal structure of lopinavir bound to wild type HIV-1 protease
Descriptor: N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE, PHOSPHATE ION, Protease
Authors:Schiffer, C.A, Nalam, M.N.L.
Deposit date:2007-06-01
Release date:2007-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Design and Synthesis of HIV-1 Protease Inhibitors Incorporating Oxazolidinones as P2/P2' Ligands in Pseudosymmetric Dipeptide Isosteres.
J.Med.Chem., 50, 2007
2ZTB
DownloadVisualize
BU of 2ztb by Molmil
Crystal structure of the parasporin-2 Bacillus thuringiensis toxin that recognizes cancer cells
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Crystal protein, ...
Authors:Akiba, T.
Deposit date:2008-09-29
Release date:2009-01-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of the parasporin-2 Bacillus thuringiensis toxin that recognizes cancer cells
J.Mol.Biol., 386, 2009
2Q9D
DownloadVisualize
BU of 2q9d by Molmil
Structure of spin-labeled T4 lysozyme mutant A41R1
Descriptor: BETA-MERCAPTOETHANOL, Lysozyme, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
Authors:Guo, Z, Cascio, D, Hideg, K, Hubbell, W.L.
Deposit date:2007-06-12
Release date:2007-06-26
Last modified:2023-08-30
Method:EPR (1.4 Å), X-RAY DIFFRACTION
Cite:Structural determinants of nitroxide motion in spin-labeled proteins: Solvent-exposed sites in helix B of T4 lysozyme.
Protein Sci., 17, 2008
3VS9
DownloadVisualize
BU of 3vs9 by Molmil
Crystal structure of type III PKS ArsC mutant
Descriptor: SODIUM ION, TETRAETHYLENE GLYCOL, Type III polyketide synthase
Authors:Satou, R, Miyanaga, A, Ozawa, H, Funa, N, Miyazono, K, Tanokura, M, Ohnishi, Y, Horinouchi, S.
Deposit date:2012-04-23
Release date:2013-04-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis for cyclization specificity of two Azotobacter type III polyketide synthases: a single amino acid substitution reverses their cyclization specificity
J.Biol.Chem., 288, 2013
3C7K
DownloadVisualize
BU of 3c7k by Molmil
Molecular architecture of Galphao and the structural basis for RGS16-mediated deactivation
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Guanine nucleotide-binding protein G(o) subunit alpha, MAGNESIUM ION, ...
Authors:Slep, K.C, Kercher, M.A, Wieland, T, Chen, C, Simon, M.I, Sigler, P.B.
Deposit date:2008-02-07
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular architecture of G{alpha}o and the structural basis for RGS16-mediated deactivation.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C8O
DownloadVisualize
BU of 3c8o by Molmil
The Crystal Structure of RraA from PAO1
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Regulator of ribonuclease activity A, ...
Authors:Luo, M, Niu, S, Yin, Y, Huang, A, Wang, D.
Deposit date:2008-02-12
Release date:2009-02-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of RraA from PAO1
To be published
3DKT
DownloadVisualize
BU of 3dkt by Molmil
Crystal structure of Thermotoga maritima encapsulin
Descriptor: Maritimacin, Putative uncharacterized protein
Authors:Sutter, M, Boehringer, D, Gutmann, S, Weber-Ban, E, Ban, N.
Deposit date:2008-06-26
Release date:2008-09-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.104 Å)
Cite:Structural basis of enzyme encapsulation into a bacterial nanocompartment
Nat.Struct.Mol.Biol., 15, 2008
5R8E
DownloadVisualize
BU of 5r8e by Molmil
PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z57475877 in complex with INTERLEUKIN-1 BETA
Descriptor: Interleukin-1 beta, SULFATE ION, ~{N}-(2-ethyl-1,2,3,4-tetrazol-5-yl)butanamide
Authors:De Nicola, G.F, Nichols, C.E.
Deposit date:2020-03-03
Release date:2020-04-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes.
J.Med.Chem., 63, 2020
5RM0
DownloadVisualize
BU of 5rm0 by Molmil
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 helicase in complex with Z1492796719
Descriptor: Helicase, PHOSPHATE ION, ZINC ION, ...
Authors:Newman, J.A, Yosaatmadja, Y, Douangamath, A, Aimon, A, Powell, A.J, Dias, A, Fearon, D, Dunnett, L, Brandao-Neto, J, Krojer, T, Skyner, R, Gorrie-Stone, T, Thompson, W, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O.
Deposit date:2020-09-16
Release date:2020-09-30
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.909 Å)
Cite:Structure, mechanism and crystallographic fragment screening of the SARS-CoV-2 NSP13 helicase.
Nat Commun, 12, 2021

223790

건을2024-08-14부터공개중

PDB statisticsPDBj update infoContact PDBjnumon