PDB: 14179 resultsInfo pagesStatus searchChemie searchBIRD

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3EHV	X-ray structure of human ubiquitin Zn(II) adduct Descriptor: Ubiquitin, ZINC ION Authors: Falini, G, Fermani, S, Tosi, G. Deposit date: 2008-09-15 Release date: 2009-03-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Structural probing of Zn(II), Cd(II) and Hg(II) binding to human ubiquitin. Chem.Commun.(Camb.), 45, 2008
3VON	Crystalstructure of the ubiquitin protease Descriptor: Ubiquitin thioesterase OTUB1, Ubiquitin-conjugating enzyme E2 N, Ubiquitin-conjugating enzyme E2 variant 2 Authors: Sato, Y, Fukai, S. Deposit date: 2012-01-30 Release date: 2012-05-30 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Molecular basis of Lys-63-linked polyubiquitination inhibition by the interaction between human deubiquitinating enzyme OTUB1 and ubiquitin-conjugating enzyme UBC13. J.Biol.Chem., 287, 2012
4I6N	Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, METHYL 4-AMINOBUTANOATE, SODIUM ION, ... Authors: Morrow, M.E, Ronau, J.A, White, R.R, Artavanis-Tsakonas, K, Das, C. Deposit date: 2012-11-29 Release date: 2013-05-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.701 Å) Cite: Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C-Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
4IG7	Crystal structure of Trichinella spiralis UCH37 bound to Ubiquitin vinyl methyl ester Descriptor: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin C-terminal hydrolase 37 Authors: Das, C, Kim, M.I, Morrow, M.E. Deposit date: 2012-12-16 Release date: 2013-05-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.996 Å) Cite: Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C‑Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
4AP4	Rnf4 - ubch5a - ubiquitin heterotrimeric complex Descriptor: E3 UBIQUITIN LIGASE RNF4, UBIQUITIN C, UBIQUITIN-CONJUGATING ENZYME E2 D1, ... Authors: Plechanovova, A, Hay, R.T, Tatham, M.H, Jaffray, E, Naismith, J.H. Deposit date: 2012-03-30 Release date: 2012-07-25 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structure of a Ring E3 Ligase and Ubiquitin-Loaded E2 Primed for Catalysis Nature, 489, 2012
3N30	Crystal Structure of cubic Zn3-hUb (human ubiquitin) adduct Descriptor: Ubiquitin, ZINC ION Authors: Siliqi, D, Caliandro, R, Arnesano, F, Natile, G, Falini, G, Fermani, S, Belviso, B.D. Deposit date: 2010-05-19 Release date: 2011-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystallographic analysis of metal-ion binding to human ubiquitin. Chemistry, 17, 2011
1TTE	The Structure of a Class II ubiquitin-conjugating enzyme, Ubc1. Descriptor: Ubiquitin-conjugating enzyme E2-24 kDa Authors: Merkley, N, Shaw, G.S. Deposit date: 2004-06-22 Release date: 2004-08-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the flexible class II ubiquitin-conjugating enzyme Ubc1 provides insights for polyubiquitin chain assembly. J.Biol.Chem., 279, 2004
4LCD	Structure of an Rsp5xUbxSna3 complex: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3 Descriptor: E3 ubiquitin-protein ligase RSP5, Protein SNA3, Ubiquitin Authors: Kamadurai, H.B, Miller, D, Schulman, B.A. Deposit date: 2013-06-21 Release date: 2013-08-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3. Elife, 2, 2013
4II3	Crystal structure of S. pombe Ubiquitin activating enzyme 1 (Uba1) in complex with ubiquitin and ATP/Mg Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... Authors: Olsen, S.K, Lima, C.D. Deposit date: 2012-12-19 Release date: 2013-02-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol.Cell, 49, 2013
5KNL	Crystal structure of S. pombe ubiquitin E1 (Uba1) in complex with Ubc15 and ubiquitin Descriptor: SULFATE ION, Ubiquitin, Ubiquitin-activating enzyme E1 1, ... Authors: Olsen, S.K, Lv, Z, Yuan, L, Williams, K. Deposit date: 2016-06-28 Release date: 2017-02-15 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: S. pombe Uba1-Ubc15 Structure Reveals a Novel Regulatory Mechanism of Ubiquitin E2 Activity. Mol. Cell, 65, 2017
1ZDN	Ubiquitin-conjugating enzyme E2S Descriptor: SODIUM ION, Ubiquitin-conjugating enzyme E2S Authors: Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2005-04-14 Release date: 2005-05-03 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.93 Å) Cite: A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 2012
1ZC1	Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites Descriptor: Ubiquitin fusion degradation protein 1 Authors: Park, S, Isaacson, R, Kim, H.T, Silver, P.A, Wagner, G. Deposit date: 2005-04-10 Release date: 2005-07-26 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Ufd1 Exhibits the AAA-ATPase Fold with Two Distinct Ubiquitin Interaction Sites Structure, 13, 2005
6OQ1	Crystal Structure of Branched K11/K48-Linked Tri-Ubiquitin Descriptor: Ubiquitin Authors: Boughton, A.J, Fushman, D. Deposit date: 2019-04-25 Release date: 2019-10-23 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1. Structure, 28, 2020
1SIF	Crystal structure of a multiple hydrophobic core mutant of ubiquitin Descriptor: ubiquitin Authors: Benitez-Cardoza, C.G, Stott, K, Hirshberg, M, Went, H.M, Woolfson, D.N, Jackson, S.E. Deposit date: 2004-02-29 Release date: 2004-07-27 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.18 Å) Cite: Exploring sequence/folding space: folding studies on multiple hydrophobic core mutants of ubiquitin Biochemistry, 43, 2004
1YH2	Ubiquitin-Conjugating Enzyme HSPC150 Descriptor: HSPC150 protein similar to ubiquitin-conjugating enzyme Authors: Walker, J.R, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Kozieradzki, I, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2005-01-06 Release date: 2005-02-15 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 2012
1Y6L	Human ubiquitin conjugating enzyme E2E2 Descriptor: Ubiquitin-conjugating enzyme E2E2 Authors: Walker, J.R, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Kozieradzki, I, Bochkarev, A, Sundstrom, M, Arrowsmith, C, Edwards, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2004-12-06 Release date: 2005-01-11 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.85 Å) Cite: A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 2012
3H7S	Crystal structures of K63-linked di- and tri-ubiquitin reveal a highly extended chain architecture Descriptor: Ubiquitin, ZINC ION Authors: Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J. Deposit date: 2009-04-28 Release date: 2009-09-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture. Proteins, 77, 2009
7B5R	Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27 Descriptor: Cullin-1, Cyclin-A2, Cyclin-dependent kinase 2, ... Authors: Horn-Ghetko, D, Prabu, J.R, Schulman, B.A. Deposit date: 2020-12-07 Release date: 2021-02-10 Last modified: 2021-03-10 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Ubiquitin ligation to F-box protein targets by SCF-RBR E3-E3 super-assembly. Nature, 590, 2021
4GSW	Crystal structure of ubiquitin from Entamoeba histolytica to 2.15 Angstrom Descriptor: SULFATE ION, Ubiquitin Authors: Bosch, D.E, Siderovski, D.P. Deposit date: 2012-08-28 Release date: 2012-12-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. J.Biol.Chem., 288, 2013
6QHK	PAO-linked dimer of the catalytic domain of the human ubiquitin-conjugating enzyme UBE2S Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Phenylarsine oxide, ... Authors: Liess, A.K.L, Lorenz, S. Deposit date: 2019-01-16 Release date: 2019-07-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination. Structure, 27, 2019
6NYA	Crystal Structure of ubiquitin E1 (Uba1) in complex with Ubc3 (Cdc34) and ubiquitin Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Olsen, S.K, Williams, K.M, Atkison, J.H. Deposit date: 2019-02-11 Release date: 2019-08-07 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.065 Å) Cite: Structural insights into E1 recognition and the ubiquitin-conjugating activity of the E2 enzyme Cdc34. Nat Commun, 10, 2019
4I6L	Crystal structure of OTUB1 in complex with ubiquitin variant Descriptor: Ubiquitin, Ubiquitin thioesterase OTUB1 Authors: Juang, Y.C, Sicheri, F. Deposit date: 2012-11-29 Release date: 2013-01-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.488 Å) Cite: A strategy for modulation of enzymes in the ubiquitin system. Science, 339, 2013
1WXS	Solution Structure of Ufm1, a ubiquitin-fold modifier Descriptor: Ubiquitin-fold Modifier 1 Authors: Sasakawa, H, Sakata, E, Yamaguchi, Y, Komatsu, M, Tatsumi, K, Kominami, E, Tanaka, K, Kato, K. Deposit date: 2005-02-01 Release date: 2006-04-18 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure and dynamics of Ufm1, a ubiquitin-fold modifier 1 Biochem.Biophys.Res.Commun., 343, 2006
6QH3	Catalytic domain of the human ubiquitin-conjugating enzyme UBE2S C118M Descriptor: 1,2-ETHANEDIOL, Ubiquitin-conjugating enzyme E2 S Authors: Liess, A.K.L, Lorenz, S. Deposit date: 2019-01-15 Release date: 2019-07-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination. Structure, 27, 2019
4GPR	Crystal structure of EhUbc5, a ubiquitin conjugating enzyme from Entamoeba histolytica Descriptor: COBALT (II) ION, Ubiquitin-conjugating enzyme family protein Authors: Bosch, D.E, Siderovski, D.P. Deposit date: 2012-08-21 Release date: 2012-12-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. J.Biol.Chem., 288, 2013

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