PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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2LWJ	NMR solution structure Myxoccoccus xanthus CdnL Descriptor: Transcriptional regulator, CarD family Authors: Jimenez, M, Padmanabhan, S, Mirassou, Y. Deposit date: 2012-08-01 Release date: 2014-02-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural Insights into RNA Polymerase Recognition and Essential Function of Myxococcus xanthus CdnL. Plos One, 9, 2014
2LT1	Solution NMR structure of the 72-residue N-terminal domain of Myxococcus xanthus CarD Descriptor: CarD protein Authors: Jimenez, M.A, Padmanabhan, S. Deposit date: 2012-05-10 Release date: 2013-11-13 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure-Function Dissection of Myxococcus xanthus CarD N-Terminal Domain, a Defining Member of the CarD_CdnL_TRCF Family of RNA Polymerase Interacting Proteins. Plos One, 10
3DSQ	Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl tRNA synthetase Descriptor: CHLORIDE ION, Pyrrolysyl-tRNA synthetase, SODIUM ION Authors: Lee, M.M, Chan, M.K. Deposit date: 2008-07-14 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl-tRNA synthetase. Biochem.Biophys.Res.Commun., 374, 2008
1G51	ASPARTYL TRNA SYNTHETASE FROM THERMUS THERMOPHILUS AT 2.4 A RESOLUTION Descriptor: ADENOSINE MONOPHOSPHATE, ASPARTYL-ADENOSINE-5'-MONOPHOSPHATE, ASPARTYL-TRNA SYNTHETASE, ... Authors: Poterzsman, A, Delarue, M, Thierry, J.C, Moras, D. Deposit date: 2000-10-30 Release date: 2000-12-06 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase. J.Mol.Biol., 244, 1994
1YFR	crystal structure of alanyl-tRNA synthetase in complex with ATP and magnesium Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Alanyl-tRNA synthetase, MAGNESIUM ION Authors: Swairjo, M.A, Schimmel, P.R. Deposit date: 2005-01-03 Release date: 2005-01-25 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase. Proc.Natl.Acad.Sci.USA, 102, 2005
1YFS	The crystal structure of alanyl-tRNA synthetase in complex with L-alanine Descriptor: ALANINE, Alanyl-tRNA synthetase Authors: Swairjo, M.A, Schimmel, P.R. Deposit date: 2005-01-03 Release date: 2005-01-25 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase. Proc.Natl.Acad.Sci.USA, 102, 2005
4J75	Crystal Structure of a parasite tRNA synthetase, product-bound Descriptor: GLYCEROL, TRYPTOPHANYL-5'AMP, Tryptophanyl-tRNA synthetase Authors: Koh, C.Y, Kim, J.E, Verlinde, C.L.M.J, Hol, W.G.J. Deposit date: 2013-02-12 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structures of Plasmodium falciparum cytosolic tryptophanyl-tRNA synthetase and its potential as a target for structure-guided drug design. Mol.Biochem.Parasitol., 189, 2013
4J76	Crystal Structure of a parasite tRNA synthetase, ligand-free Descriptor: GLYCEROL, Tryptophanyl-tRNA synthetase Authors: Koh, C.Y, Kim, J.E, Verlinde, C.L.M.J, Hol, W.G.J. Deposit date: 2013-02-12 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Crystal structures of Plasmodium falciparum cytosolic tryptophanyl-tRNA synthetase and its potential as a target for structure-guided drug design. Mol.Biochem.Parasitol., 189, 2013
1WN2	Crystal structure of project ID PH1539 from Pyrococcus horikoshii OT3 Descriptor: Peptidyl-tRNA hydrolase, SODIUM ION Authors: Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-07-26 Release date: 2005-07-19 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Structure of peptidyl-tRNA hydrolase 2 from Pyrococcus horikoshii OT3: insight into the functional role of its dimeric state. Acta Crystallogr.,Sect.D, 64, 2008
2Q7G	Pyrrolysine tRNA Synthetase bound to a pyrrolysine analogue (cyc) and ATP Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kavran, J.M, Steitz, T.A. Deposit date: 2007-06-06 Release date: 2007-07-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation. Proc.Natl.Acad.Sci.Usa, 104, 2007
5THH	Crystal structure of a human tyrosyl-tRNA synthetase mutant Descriptor: TYROSINE, Tyrosine--tRNA ligase, cytoplasmic Authors: Blocquel, D, Yang, X.L. Deposit date: 2016-09-29 Release date: 2017-05-17 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.959 Å) Cite: Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy. Nucleic Acids Res., 45, 2017
6SSN	RNASE 3/1 version3 Descriptor: GLYCEROL, PHOSPHATE ION, RNase 3/1 version3 Authors: Fernandez-Millan, P, Prats-Ejarque, G, Vazquez-Monteagudo, S, Boix, E. Deposit date: 2019-09-08 Release date: 2021-10-06 Last modified: 2023-03-29 Method: X-RAY DIFFRACTION (1.511 Å) Cite: Exploring the RNase A scaffold to combine catalytic and antimicrobial activities. Structural characterization of RNase 3/1 chimeras. Front Mol Biosci, 9, 2022
6YMT	RNASE 3/1 version1 Descriptor: GLYCEROL, RNase 3/1 version 1 Authors: Fernandez-Millan, P, Prats-Ejarque, G, Vazquez-Monteagudo, S, Boix, E. Deposit date: 2020-04-09 Release date: 2021-07-21 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Exploring the RNase A scaffold to combine catalytic and antimicrobial activities. Structural characterization of RNase 3/1 chimeras. Front Mol Biosci, 9, 2022
6YBC	RNASE 3/1 version2 phosphate complex Descriptor: GLYCEROL, PHOSPHATE ION, RNASE 3/1 version2 Authors: Fernandez-Millan, P, Prats-Ejarque, G, Vazquez-Monteagudo, S, Boix, E. Deposit date: 2020-03-16 Release date: 2021-10-06 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Exploring the RNase A scaffold to combine catalytic and antimicrobial activities. Structural characterization of RNase 3/1 chimeras. Front Mol Biosci, 9, 2022
1VTQ	THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION Descriptor: T-RNA-ASP Authors: Comarmond, M.B, Giege, R, Thierry, J.C, Moras, D, Fischer, J. Deposit date: 1985-06-11 Release date: 2011-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3 Å) Cite: Three-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination Acta Crystallogr.,Sect.B, 42, 1986
1KVZ	Solution Structure of Cytotoxic RC-RNase4 Descriptor: RC-RNase4 Authors: Hsu, C.-H, Liao, Y.-D, Chen, L.-W, Wu, S.-H, Chen, C. Deposit date: 2002-01-28 Release date: 2002-07-28 Last modified: 2022-12-21 Method: SOLUTION NMR Cite: Solution Structure of the Cytotoxic RNase 4 from the Oocytes of Bullfrog Rana Catesbeiana J.MOL.BIOL., 326, 2003
4AUD	Crystal structure of alternaria alternata major allergen alt a 1 Descriptor: MAJOR ALLERGEN ALT A 1 SUBUNIT, SULFATE ION Authors: Mechaly, A.E, Ibanez de Opakua, A, Asturias, J, Viguera, A.R. Deposit date: 2012-05-16 Release date: 2013-05-29 Method: X-RAY DIFFRACTION (2.67 Å) Cite: Crystal Structure of Major Allergen of Alternaria Alternata Alt a 1 To be Published
4V8Z	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex Descriptor: 18S RIBOSOMAL RNA, 25S RIBOSOMAL RNA, 40S RIBOSOMAL PROTEIN S0-A, ... Authors: Fernandez, I.S, Bai, X.C, Hussain, T, Kelley, A.C, Lorsch, J.R, Ramakrishnan, V, Scheres, S.H.W. Deposit date: 2013-07-20 Release date: 2014-07-09 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Molecular architecture of a eukaryotic translational initiation complex. Science, 342, 2013
8OPP	Structure of human terminal uridylyltransferase 7 (hTUT7/ZCCHC6) bound with pre-let7g miRNA and UTPalphaS Descriptor: RNA (25-MER), Terminal uridylyltransferase 7, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] phosphono hydrogen phosphate Authors: Yi, G, Ye, M, Gilbert, R.J. Deposit date: 2023-04-07 Release date: 2024-07-24 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (3.76 Å) Cite: Structural basis for activity switching in polymerases determining the fate of let-7 pre-miRNAs. Nat.Struct.Mol.Biol., 2024
5B63	Crystal structures of E.coli arginyl-tRNA synthetase (ArgRS) in complex with substrate tRNA(Arg) Descriptor: Arginine--tRNA ligase, tRNA-Arg Authors: Zhou, M, Ye, S, Stephen, P, Zhang, R, Wang, E.D, Giege, R, Lin, S.X. Deposit date: 2016-05-24 Release date: 2017-05-31 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structures of E.coli arginyl-tRNA synthetase (ArgRS) in complex with substrate tRNA(Arg) To Be Published
6TPQ	RNase M5 bound to 50S ribosome with precursor 5S rRNA Descriptor: 50S ribosomal protein L10, 50S ribosomal protein L13, 50S ribosomal protein L14, ... Authors: Oerum, S, Dendooven, T, Gilet, L, Catala, M, Degut, C, Trinquier, A, Barraud, P, Luisi, B, Condon, C, Tisne, C. Deposit date: 2019-12-13 Release date: 2020-09-30 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs. Mol.Cell, 80, 2020
9ENF	Human pseudouridine synthase 3 (PUS3 D118A mutant) and two pre-tRNA-Arg Descriptor: pre-tRNA-Arg, tRNA pseudouridine(38/39) synthase Authors: Lin, T.-Y, Jezowski, J, Glatt, S. Deposit date: 2024-03-12 Release date: 2024-07-10 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.97 Å) Cite: The molecular basis of tRNA selectivity by human pseudouridine synthase 3. Mol.Cell, 84, 2024
5M3F	Yeast RNA polymerase I elongation complex at 3.8A Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Neyer, S, Kunz, M, Geiss, C, Hantsche, M, Hodirnau, V.-V, Seybert, A, Engel, C, Scheffer, M.P, Cramer, P, Frangakis, A.S. Deposit date: 2016-10-14 Release date: 2016-11-23 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structure of RNA polymerase I transcribing ribosomal DNA genes. Nature, 540, 2016
4DPG	Crystal Structure of Human LysRS: P38/AIMP2 Complex I Descriptor: ALANINE, Aminoacyl tRNA synthase complex-interacting multifunctional protein 2, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ... Authors: Fang, P, Wang, J, Bennett, S.P, Guo, M. Deposit date: 2012-02-13 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.844 Å) Cite: Structural Switch of Lysyl-tRNA Synthetase between Translation and Transcription. Mol.Cell, 49, 2013
4WJ4	Crystal structure of non-discriminating aspartyl-tRNA synthetase from Pseudomonas aeruginosa complexed with tRNA(Asn) and aspartic acid Descriptor: 76mer-tRNA, ASPARTIC ACID, Aspartate--tRNA(Asp/Asn) ligase Authors: Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. Deposit date: 2014-09-29 Release date: 2014-12-31 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.294 Å) Cite: Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA, 112, 2015

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