PDB: 47011 resultsInfo pagesStatus searchChemie searchBIRD

---

8U5Y	human RADX trimer bound to ssDNA Descriptor: DNA (25-MER), RPA-related protein RADX Authors: Balakrishnan, S, Chazin, W.J. Deposit date: 2023-09-13 Release date: 2023-10-11 Last modified: 2023-10-18 Method: ELECTRON MICROSCOPY (3.01 Å) Cite: Structure of RADX and mechanism for regulation of RAD51 nucleofilaments. Biorxiv, 2023
5Z51	Helicase binding domain of primase from Mycobacterium tuberculosis Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, DNA primase Authors: Sharma, D.P, Gourinath, S. Deposit date: 2018-01-16 Release date: 2018-11-28 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.583 Å) Cite: Structural insights into the interaction of helicase and primase inMycobacterium tuberculosis. Biochem. J., 475, 2018
2XCQ	The 2.98A crystal structure of the catalytic core (B'A' region) of Staphylococcus aureus DNA Gyrase Descriptor: DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A Authors: Bax, B.D, Chan, P.F, Eggleston, D.S, Fosberry, A, Gentry, D.R, Gorrec, F, Giordano, I, Hann, M.M, Hennessy, A, Hibbs, M, Huang, J, Jones, E, Jones, J, Brown, K.K, Lewis, C.J, May, E.W, Singh, O, Spitzfaden, C, Shen, C, Shillings, A, Theobald, A.F, Wohlkonig, A, Pearson, N.D, Gwynn, M.N. Deposit date: 2010-04-24 Release date: 2010-08-04 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.98 Å) Cite: Type Iia Topoisomerase Inhibition by a New Class of Antibacterial Agents. Nature, 466, 2010
5WW7	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 360 iron atoms per dodecamer Descriptor: CHLORIDE ION, FE (II) ION, FE (III) ION, ... Authors: Williams, S.M, Chatterji, D. Deposit date: 2016-12-31 Release date: 2017-08-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW6	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 240 iron atoms per dodecamer Descriptor: CHLORIDE ION, FE (II) ION, FE (III) ION, ... Authors: Williams, S.M, Chatterji, D. Deposit date: 2016-12-31 Release date: 2017-08-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW5	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 100 iron atoms per dodecamer Descriptor: CHLORIDE ION, FE (II) ION, FE (III) ION, ... Authors: Williams, S.M, Chatterji, D. Deposit date: 2016-12-31 Release date: 2017-08-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW8	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 480 iron atoms per dodecamer Descriptor: CHLORIDE ION, FE (II) ION, FE (III) ION, ... Authors: Williams, S.M, Chatterji, D. Deposit date: 2016-12-31 Release date: 2017-08-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5EYO	The crystal structure of the Max bHLH domain in complex with 5-carboxyl cytosine DNA Descriptor: DNA (5'-D(*AP*GP*TP*AP*GP*CP*AP*(1CC)P*GP*TP*GP*CP*TP*AP*CP*T)-3'), Protein max Authors: Wang, D, Hashimoto, H, Zhang, X, Cheng, X. Deposit date: 2015-11-25 Release date: 2016-12-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.39 Å) Cite: MAX is an epigenetic sensor of 5-carboxylcytosine and is altered in multiple myeloma. Nucleic Acids Res., 45, 2017
5WW4	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 48 iron atoms per dodecamer Descriptor: CHLORIDE ION, FE (II) ION, FE (III) ION, ... Authors: Williams, S.M, Chatterji, D. Deposit date: 2016-12-31 Release date: 2017-08-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW3	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 24 iron atoms per dodecamer Descriptor: CHLORIDE ION, FE (II) ION, FE (III) ION, ... Authors: Williams, S.M, Chatterji, D. Deposit date: 2016-12-31 Release date: 2017-08-09 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW9	Crystal structure of R73E mutant of the second DNA-Binding protein under starvation from Mycobacterium smegmatis Descriptor: CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ... Authors: Williams, S.M, Chatterji, D. Deposit date: 2016-12-31 Release date: 2017-08-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
7EUC	Parallel G-quadruplex structure Descriptor: DNA (5'-D(*TP*TP*GP*GP*GP*G)-3'), DNA (5'-D(P*GP*GP*GP*G)-3'), DNA (5'-D(P*GP*GP*GP*GP*T)-3'), ... Authors: Winnerdy, F.R, Devi, G, Ang, J.C.Y, Lim, K.W, Phan, A.T. Deposit date: 2021-05-17 Release date: 2022-03-30 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Four-Layered Intramolecular Parallel G-Quadruplex with Non-Nucleotide Loops: An Ultra-Stable Self-Folded DNA Nano-Scaffold. Acs Nano, 16, 2022
7N8S	LINE-1 endonuclease domain complex with DNA Descriptor: DNA (5'-D(*CP*CP*TP*TP*AP*AP*AP*AP*AP*GP*GP*AP*GP*CP*T)-3'), DNA (5'-D(*GP*CP*TP*CP*CP*TP*TP*TP*TP*TP*AP*AP*GP*GP*A)-3'), LINE-1 retrotransposable element ORF2 protein Authors: Korolev, S, Miller, I. Deposit date: 2021-06-15 Release date: 2021-10-13 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease. Nucleic Acids Res., 49, 2021
7N94	LINE-1 endonuclease domain complex with DNA Descriptor: DNA (5'-D(*AP*GP*CP*CP*CP*TP*TP*AP*AP*AP*AP*AP*GP*GP*AP*GP*CP*T)-3'), DNA (5'-D(*GP*CP*TP*CP*CP*TP*TP*TP*TP*TP*AP*AP*GP*GP*GP*CP*TP*A)-3'), LINE-1 retrotransposable element ORF2 protein Authors: Korolev, S, Miller, I. Deposit date: 2021-06-16 Release date: 2021-10-13 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease. Nucleic Acids Res., 49, 2021
5FPR	Structure of Bacterial DNA Ligase with small-molecule ligand pyrimidin-2-amine (AT371) in an alternate binding site. Descriptor: DNA LIGASE, PYRIMIDIN-2-AMINE, SULFATE ION Authors: Jhoti, H, Ludlow, R.F, Pathuri, P, Saini, H.K, Tickle, I.J, Tisi, D, Verdonk, M, Williams, P.A. Deposit date: 2015-12-02 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2 Å) Cite: Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA, 112, 2015
2QNF	Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches Descriptor: DNA (5'-D(*DCP*DAP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DGP*DAP*DGP*DCP*DCP*DG)-3'), DNA (5'-D(*DCP*DAP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DGP*DAP*DGP*DCP*DGP*DC)-3'), DNA (5'-D(*DCP*DGP*DGP*DCP*DTP*DCP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DTP*DG)-3'), ... Authors: Biertumpfel, C, Yang, W, Suck, D. Deposit date: 2007-07-18 Release date: 2008-01-29 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of T4 endonuclease VII resolving a Holliday junction. Nature, 449, 2007
2IF9	Crystal Structure of SV40 T-antigen origin binding domain disulfide-linked dimer Descriptor: Large T antigen Authors: Meinke, G, Bullock, P.A, Bohm, A. Deposit date: 2006-09-20 Release date: 2007-02-13 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.586 Å) Cite: The Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA Plos Biol., 5, 2007
8C7B	Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3') Authors: Wang, B, Zalar, M, Plavec, J, Sket, P. Deposit date: 2023-01-14 Release date: 2023-11-22 Method: SOLUTION NMR Cite: Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure. Int J Mol Sci, 24, 2023
5ZOG	Crystal Structure of R192F hFen1 in complex with DNA Descriptor: DNA (5'-D(*CP*CP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*GP*AP*T)-3'), DNA (5'-D(P*TP*CP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*G)-3'), ... Authors: Han, W, Hua, Y, Zhao, Y. Deposit date: 2018-04-13 Release date: 2019-01-30 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.299 Å) Cite: Structural basis of 5' flap recognition and protein-protein interactions of human flap endonuclease 1. Nucleic Acids Res., 46, 2018
8XJ8	The Cryo-EM structure of MPXV E5 C-terminal in complex with DNA Descriptor: DNA (70-MER), MAGNESIUM ION, Monkeypox virus E5, ... Authors: Zhang, W, Liu, Y, Gao, H, Gan, J. Deposit date: 2023-12-20 Release date: 2024-05-01 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.67 Å) Cite: Structural and functional insights into the helicase protein E5 of Mpox virus. Cell Discov, 10, 2024
8XJ7	The Cryo-EM structure of MPXV E5 in complex with DNA Descriptor: DNA (70-MER), MAGNESIUM ION, Monkeypox virus E5, ... Authors: Zhang, W, Liu, Y, Gao, H, Gan, J. Deposit date: 2023-12-20 Release date: 2024-05-01 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.74 Å) Cite: Structural and functional insights into the helicase protein E5 of Mpox virus. Cell Discov, 10, 2024
3V1Z	Crystal structure of Type IIF restriction endonuclease Bse634I with cognate DNA Descriptor: DNA (5'-D(*TP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*CP*G)-3'), Endonuclease Bse634IR Authors: Manakova, E.N, Grazulis, S, Golovenko, D, Tamulaitiene, G. Deposit date: 2011-12-11 Release date: 2012-04-25 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease. Nucleic Acids Res., 40, 2012
6O1D	Cryo-EM structure of the centromeric nucleosome with native alpha satellite DNA Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Zhou, B.-R. Deposit date: 2019-02-19 Release date: 2019-05-22 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.395 Å) Cite: Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment. Nat Commun, 10, 2019
5ZOE	Crystal Structure of D181A hFen1 in complex with DNA Descriptor: DNA (5'-D(*AP*CP*TP*TP*TP*GP*AP*GP*GP*CP*AP*GP*AP*G)-3'), DNA (5'-D(*CP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*CP*GP*TP*CP*C)-3'), ... Authors: Han, W, Hua, Y, Zhao, Y. Deposit date: 2018-04-13 Release date: 2019-01-30 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural basis of 5' flap recognition and protein-protein interactions of human flap endonuclease 1. Nucleic Acids Res., 46, 2018
8C7A	Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3') Authors: Wang, B, Zalar, M, Plavec, J, Sket, P. Deposit date: 2023-01-14 Release date: 2023-11-22 Method: SOLUTION NMR Cite: Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure. Int J Mol Sci, 24, 2023

<370371372373374375376377378379380381382383384385>