PDB: 46197 resultsInfo pagesStatus searchChemie searchBIRD

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6W1F	Crystal structure of Streptococcus thermophilus SHP pheromone receptor Rgg3 bound to DNA Descriptor: DNA (30-MER), Positive transcriptional regulator MutR family Authors: Neiditch, M.B, Capodagli, G.C. Deposit date: 2020-03-04 Release date: 2020-10-21 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure-function studies of Rgg binding to pheromones and target promoters reveal a model of transcription factor interplay. Proc.Natl.Acad.Sci.USA, 117, 2020
4PCB	Conjugative Relaxase TrwC in complex with mutant OriT Dna Descriptor: DNA 5'-D(P*GP*CP*AP*CP*CP*GP*AP*AP*GP*GP*TP*GP*CP*GP*TP*AP*TP*TP*CP*TP*TP*GP - 3'), PHOSPHATE ION, TrwC Authors: Moncalian, G, Carballeira, J.D, de la Cruz, F, Gonzalez-Perez, B. Deposit date: 2014-04-14 Release date: 2014-09-17 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A high security double lock and key mechanism in HUH relaxases controls oriT-processing for plasmid conjugation. Nucleic Acids Res., 42, 2014
5DDG	The structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI in complex with target double strand DNA Descriptor: DNA (27-MER), FORMIC ACID, MALONIC ACID, ... Authors: Chang, C, Tesar, C, Rodionov, D, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2015-08-24 Release date: 2015-09-09 Last modified: 2015-12-16 Method: X-RAY DIFFRACTION (3.06 Å) Cite: A novel transcriptional regulator of L-arabinose utilization in human gut bacteria. Nucleic Acids Res., 43, 2015
3TUO	Crystal structure of N-terminal domain of DNA-binding protein satb1 Descriptor: DNA-binding protein SATB1 Authors: Wang, Z, Yang, X, Long, J, Shen, Y. Deposit date: 2011-09-17 Release date: 2012-02-01 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.697 Å) Cite: The structural basis for the oligomerization of the N-terminal domain of SATB1 Nucleic Acids Res., 40, 2012
5Z2V	Crystal structure of RecR from Pseudomonas aeruginosa PAO1 Descriptor: ANY 5'-MONOPHOSPHATE NUCLEOTIDE, GLYCEROL, PHOSPHATE ION, ... Authors: Che, S, Zhang, Q, Bartlam, M. Deposit date: 2018-01-04 Release date: 2019-01-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of RecR, a member of the RecFOR DNA-repair pathway, from Pseudomonas aeruginosa PAO1. Acta Crystallogr F Struct Biol Commun, 74, 2018
6USP	Telomerase Reverse Transcriptase product complex, TERT:DNA Descriptor: DNA (5'-D(P*GP*GP*TP*CP*AP*GP*GP*TP*CP*AP*GP*GP*TP*CP*AP*G)-3'), DNA/RNA (5'-R(*CP*UP*GP*AP*CP*CP*UP*GP*AP*C)-D(P*CP*T)-R(P*GP*AP*C)-D(P*C)-3'), MAGNESIUM ION, ... Authors: Schaich, M.A, Freudenthal, B.D. Deposit date: 2019-10-28 Release date: 2020-06-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.56 Å) Cite: Mechanisms of nucleotide selection by telomerase. Elife, 9, 2020
6USQ	Telomerase Reverse Transcriptase binary complex with Y256A mutation, TERT:DNA Descriptor: DNA (5'-D(*GP*GP*TP*CP*AP*GP*GP*TP*CP*AP*GP*GP*TP*CP*A)-3'), DNA/RNA (5'-R(*CP*UP*GP*AP*CP*CP*UP*GP*AP*C)-D(P*CP*T)-R(P*GP*AP*C)-D(P*C)-3'), MAGNESIUM ION, ... Authors: Schaich, M.A, Freudenthal, B.D, Khoang, T.H. Deposit date: 2019-10-28 Release date: 2020-06-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.62 Å) Cite: Mechanisms of nucleotide selection by telomerase. Elife, 9, 2020
6USR	Telomerase Reverse Transcriptase ternary complex, TERT:DNA:dGpCpp Descriptor: DNA (5'-D(*GP*GP*TP*CP*AP*GP*GP*TP*CP*AP*GP*GP*TP*CP*A)-3'), DNA/RNA (5'-R(*CP*UP*GP*AP*CP*CP*UP*GP*AP*C)-D(P*CP*T)-R(P*GP*AP*C)-D(P*C)-3'), MAGNESIUM ION, ... Authors: Schaich, M.A, Freudenthal, B.D. Deposit date: 2019-10-28 Release date: 2020-06-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.93 Å) Cite: Mechanisms of nucleotide selection by telomerase. Elife, 9, 2020
7ABS	Structure of human DCLRE1C/Artemis in complex with DNA - re-evaluation of 6WO0 Descriptor: DNA (5'-D(*CP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*AP*TP*CP*AP*GP*CP*T)-3'), Protein artemis, ... Authors: Newman, J.A, Yosaatmadja, Y, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2020-09-08 Release date: 2021-08-04 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition. Nucleic Acids Res., 49, 2021
1WET	STRUCTURE OF THE PURR-GUANINE-PURF OPERATOR COMPLEX Descriptor: DNA (5'-D(*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*TP*TP*TP*TP*CP*GP*T )-3'), GUANINE, PROTEIN (PURINE REPRESSOR) Authors: Schumacher, M.A, Glasfeld, A, Zalkin, H, Brennan, R.G. Deposit date: 1997-04-27 Release date: 1997-11-21 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The X-ray structure of the PurR-guanine-purF operator complex reveals the contributions of complementary electrostatic surfaces and a water-mediated hydrogen bond to corepressor specificity and binding affinity. J.Biol.Chem., 272, 1997
7RHY	Cre recombinase mutant (D33A/A36V/R192A) in complex with loxA DNA hairpin Descriptor: DNA (49-MER), Recombinase cre Authors: Stachowski, K, Foster, M.P. Deposit date: 2021-07-19 Release date: 2022-01-19 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.91 Å) Cite: Mechanisms of Cre recombinase synaptic complex assembly and activation illuminated by Cryo-EM. Nucleic Acids Res., 50, 2022
1D9F	CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3' Descriptor: DNA POLYMERASE I, DNA/RNA (5'-D(*TP*TP)-R(*(U31)P)-D(*T)-3'), SULFATE ION, ... Authors: Teplova, M, Wallace, S.T, Tereshko, V, Minasov, G, Simons, A.M, Cook, P.D, Manoharan, M, Egli, M. Deposit date: 1999-10-27 Release date: 1999-12-02 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural origins of the exonuclease resistance of a zwitterionic RNA. Proc.Natl.Acad.Sci.USA, 96, 1999
1ZVV	Crystal structure of a ccpa-crh-dna complex Descriptor: DNA recognition strand CRE, Glucose-resistance amylase regulator, HPr-like protein crh, ... Authors: Schumacher, M.A, Brennan, R.G, Hillen, W, Seidel, G. Deposit date: 2005-06-02 Release date: 2006-02-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.98 Å) Cite: Phosphoprotein Crh-Ser46-P displays altered binding to CcpA to effect carbon catabolite regulation. J.Biol.Chem., 281, 2006
4HJ9	Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (CGGTTACGGT) Descriptor: DNA (5'-D(*CP*GP*GP*TP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1 Authors: Dickey, T.H, Wuttke, D.S. Deposit date: 2012-10-12 Release date: 2012-12-12 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013
4HIO	Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTAACGGT) Descriptor: DNA (5'-D(*GP*GP*TP*AP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1 Authors: Dickey, T.H, McKercher, M.A, Wuttke, D.S. Deposit date: 2012-10-11 Release date: 2012-12-12 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.753 Å) Cite: Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013
4HIM	Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGATACGGT) Descriptor: DNA (5'-D(*GP*GP*AP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1 Authors: Dickey, T.H, Wuttke, D.S. Deposit date: 2012-10-11 Release date: 2012-12-12 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013
7DVV	Heme sensor protein PefR from Streptococcus agalactiae bound to operator DNA (28-mer) Descriptor: DNA (28-MER), HTH marR-type domain-containing protein Authors: Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H. Deposit date: 2021-01-15 Release date: 2021-09-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival. Commun Biol, 4, 2021
6W7A	The crystal structure of the 2009/H1N1/California PA endonuclease mutant E119D bound to DNA oligomer TAGCAT (uncleaved, 5mM overnight DNA soak) Descriptor: DNA (5'-D(P*TP*AP*GP*CP*AP*T)-3'), GLYCEROL, MANGANESE (II) ION, ... Authors: Cuypers, M.G, Kumar, G, Webb, T, White, S.W. Deposit date: 2020-03-18 Release date: 2021-02-03 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Structural insights into the substrate specificity of the endonuclease activity of the influenza virus cap-snatching mechanism. Nucleic Acids Res., 49, 2021
5HRO	STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE In COMPLEX WITH A DNA aptamer and an Alpha-carboxy nucleoside phosphonate inhibitor (alpha-CNP) Descriptor: DNA (38-MER), HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT, HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT, ... Authors: Das, K, Arnold, E. Deposit date: 2016-01-23 Release date: 2016-06-01 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Conformational States of HIV-1 Reverse Transcriptase for Nucleotide Incorporation vs Pyrophosphorolysis-Binding of Foscarnet. Acs Chem.Biol., 11, 2016
8HWH	Cryo-EM Structure of D5 Apo-ssDNA form Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), Primase D5 Authors: Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H. Deposit date: 2022-12-29 Release date: 2024-01-10 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus. Nat.Struct.Mol.Biol., 31, 2024
1CDW	HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA Descriptor: DNA (5'-D(*CP*AP*GP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*CP*TP*G)-3'), PROTEIN (TATA BINDING PROTEIN (TBP)) Authors: Nikolov, D.B, Chen, H, Halay, E.D, Hoffmann, A, Roeder, R.G, Burley, S.K. Deposit date: 1996-04-11 Release date: 1996-12-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of a human TATA box-binding protein/TATA element complex. Proc.Natl.Acad.Sci.USA, 93, 1996
1LCC	STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS Descriptor: DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3'), Lac Repressor, ... Authors: Chuprina, V.P, Rullmann, J.A.C, Lamerichs, R.M.J.N, Van Boom, J.H, Boelens, R, Kaptein, R. Deposit date: 1993-03-25 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics. J.Mol.Biol., 234, 1993
2HIK	heterotrimeric PCNA sliding clamp Descriptor: PCNA1 (SSO0397), PCNA2 (SSO1047), PCNA3 (SSO0405) Authors: Pascal, J.M, Tsodikov, O.V, Ellenberger, T. Deposit date: 2006-06-29 Release date: 2006-11-07 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.3 Å) Cite: A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
2HII	heterotrimeric PCNA sliding clamp Descriptor: PCNA1 (SSO0397), PCNA2 (SSO1047), PCNA3 (SSO0405) Authors: Pascal, J.M, Tsodikov, O.V, Ellenberger, T. Deposit date: 2006-06-29 Release date: 2006-11-07 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (2.79 Å) Cite: A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
2M8Y	Structure of d[CGCGAAGCATTCGCG] hairpin Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*GP*CP*AP*TP*TP*CP*GP*CP*G)-3') Authors: Lim, K.W, Phan, A.T. Deposit date: 2013-05-30 Release date: 2013-07-10 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural basis of DNA quadruplex-duplex junction formation. Angew.Chem.Int.Ed.Engl., 52, 2013

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