PDB: 2748 resultsInfo pagesStatus searchChemie searchBIRD

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7VBN	Matrix arm of deactive state CI from DQ-NADH dataset Descriptor: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ... Authors: Gu, J.K, Yang, M.J. Deposit date: 2021-08-31 Release date: 2022-04-06 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022
7VBZ	Matrix arm of active state CI from Rotenone-NADH dataset Descriptor: (2R,6aS,12aS)-8,9-dimethoxy-2-(prop-1-en-2-yl)-1,2,12,12a-tetrahydrofuro[2',3':7,8][1]benzopyrano[2,3-c][1]benzopyran-6(6aH)-one, (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ... Authors: Gu, J.K, Yang, M.J. Deposit date: 2021-09-01 Release date: 2022-04-06 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022
8Q87	Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Nurullina, L, Jenner, L, Yusupov, M. Deposit date: 2023-08-18 Release date: 2024-08-28 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells To Be Published
3AQB	M. luteus B-P 26 heterodimeric hexaprenyl diphosphate synthase in complex with magnesium Descriptor: CHLORIDE ION, Component A of hexaprenyl diphosphate synthase, Component B of hexaprenyl diphosphate synthase, ... Authors: Sasaki, D, Fujihashi, M, Okuyama, N, Kobayashi, Y, Noike, M, Koyama, T, Miki, K. Deposit date: 2010-10-28 Release date: 2010-11-10 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of heterodimeric hexaprenyl diphosphate synthase from Micrococcus luteus B-P 26 reveals that the small subunit is directly involved in the product chain length regulation. J.Biol.Chem., 286, 2011
4FOI	Crystal Structure of recombinant human Hexokinase type I mutant D413N with Glucose 1,6-bisphosphate Descriptor: 1,6-di-O-phosphono-alpha-D-glucopyranose, CITRIC ACID, Hexokinase-1, ... Authors: Shen, L, Honzatko, R.B. Deposit date: 2012-06-20 Release date: 2013-07-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: DETERMINATION of SITE AFFINITY CONSTANTS FOR PRODUCT INHIBITION OF WILD-TYPE AND MUTANT FORMS OF RECOMBINANT HUMAN HEXOKINASE TYPE I To be Published
8HTZ	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-12-22 Release date: 2024-04-03 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 31, 2024
3MJK	Structure of a growth factor precursor Descriptor: Platelet-derived growth factor subunit A Authors: Liu, H, He, X. Deposit date: 2010-04-12 Release date: 2010-06-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of a platelet-derived growth factor/propeptide complex and a platelet-derived growth factor/receptor complex. Proc.Natl.Acad.Sci.USA, 107, 2010
7VYN	Matrix arm of active state CI from Q1-NADH dataset Descriptor: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ... Authors: Gu, J, Yang, M. Deposit date: 2021-11-14 Release date: 2022-12-28 Last modified: 2023-06-28 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022
8AGX	Yeast RQC complex in state with the RING domain of Ltn1 in the IN position Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Tesina, P, Buschauer, R, Beckmann, R. Deposit date: 2022-07-20 Release date: 2023-03-08 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Molecular basis of eIF5A-dependent CAT tailing in eukaryotic ribosome-associated quality control. Mol.Cell, 83, 2023
1Z6P	Glycogen phosphorylase AMP site inhibitor complex Descriptor: 4-{2-[(3-NITROBENZOYL)AMINO]PHENOXY}PHTHALIC ACID, Glycogen phosphorylase, muscle form Authors: Kristiansen, M, Andersen, B, Iversen, L.F, Westergaard, N. Deposit date: 2005-03-23 Release date: 2005-04-12 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Identification, synthesis and chracterization of new glycogen phosphorylase inhibitors binding to the allosteric AMP site J.Med.Chem., 47, 2004
1GPY	CRYSTALLOGRAPHIC BINDING STUDIES ON THE ALLOSTERIC INHIBITOR GLUCOSE-6-PHOSPHATE TO T STATE GLYCOGEN PHOSPHORYLASE B Descriptor: 6-O-phosphono-alpha-D-glucopyranose, GLYCOGEN PHOSPHORYLASE B, PYRIDOXAL-5'-PHOSPHATE Authors: Johnson, L.N. Deposit date: 1993-03-31 Release date: 1993-10-31 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystallographic binding studies on the allosteric inhibitor glucose-6-phosphate to T state glycogen phosphorylase b. J.Mol.Biol., 232, 1993
2AZJ	Crystal structure for the mutant D81C of Sulfolobus solfataricus hexaprenyl pyrophosphate synthase Descriptor: Geranylgeranyl pyrophosphate synthetase Authors: Sun, H.Y, Ko, T.P, Kuo, C.J, Guo, R.T, Chou, C.C, Liang, P.H, Wang, A.H.J. Deposit date: 2005-09-11 Release date: 2006-03-14 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Homodimeric hexaprenyl pyrophosphate synthase from the thermoacidophilic crenarchaeon Sulfolobus solfataricus displays asymmetric subunit structures J.Bacteriol., 187, 2005
1CZ8	VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH AN AFFINITY MATURED ANTIBODY Descriptor: HEAVY CHAIN OF NEUTRALIZING ANTIBODY, LIGHT CHAIN OF NEUTRALIZING ANTIBODY, SULFATE ION, ... Authors: Chen, Y, Wiesmann, C, Fuh, G, Li, B, Christinger, H.W, McKay, P, de Vos, A.M, Lowman, H.B. Deposit date: 1999-09-01 Release date: 2000-03-20 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Selection and analysis of an optimized anti-VEGF antibody: crystal structure of an affinity-matured Fab in complex with antigen. J.Mol.Biol., 293, 1999
1V4I	Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima F132A mutant Descriptor: SULFATE ION, octoprenyl-diphosphate synthase Authors: Guo, R.T, Kuo, C.J, Chou, C.C, Ko, T.P, Shr, H.L, Liang, P.H, Wang, A.H.-J. Deposit date: 2003-11-14 Release date: 2004-03-02 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima and Mechanism of Product Chain Length Determination J.Biol.Chem., 279, 2004
1QPX	CRYSTAL STRUCTURES OF SELF-CAPPING PAPD CHAPERONE HOMODIMERS Descriptor: PAPD CHAPERONE Authors: Hung, D.L, Pinkner, J.S, Knight, S.D, Hultgren, S.J. Deposit date: 1999-05-31 Release date: 1999-07-07 Last modified: 2022-12-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural basis of chaperone self-capping in P pilus biogenesis. Proc.Natl.Acad.Sci.USA, 96, 1999
4KQ5	Crystal Structure of Human Farnesyl Pyrophosphate Synthase Mutant (Y204A) Complexed with Mg and Zoledronate Descriptor: 1,2-ETHANEDIOL, Farnesyl pyrophosphate synthase, MAGNESIUM ION, ... Authors: Barnett, B.L, Tsoumpra, M.K, Muniz, J.R.C. Deposit date: 2013-05-14 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of Human Farnesyl Pyrophosphate Synthase Mutant (Y204A) Complexed with Mg and Zoledronate To be Published
1IRI	Crystal structure of human autocrine motility factor complexed with an inhibitor Descriptor: ERYTHOSE-4-PHOSPHATE, autocrine motility factor Authors: Tanaka, N, Haga, A, Uemura, H, Akiyama, H, Funasaka, T, Nagase, H, Raz, A, Nakamura, K.T. Deposit date: 2001-10-08 Release date: 2002-06-05 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Inhibition mechanism of cytokine activity of human autocrine motility factor examined by crystal structure analyses and site-directed mutagenesis studies. J.Mol.Biol., 318, 2002
1VQ9	The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui Descriptor: 23S ribosomal rna, 5'-R(*CP*CP*AP*(PHE)*(ACA))-3', 50S RIBOSOMAL PROTEIN L10E, ... Authors: Schmeing, T.M, Steitz, T.A. Deposit date: 2004-12-16 Release date: 2005-11-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction. Mol.Cell, 20, 2005
2QN1	Glycogen Phosphorylase b in complex with asiatic acid Descriptor: Glycogen phosphorylase, muscle form, asiatic acid Authors: Zographos, S.E, Leonidas, D.D, Alexacou, K.-M, Hayes, J, Oikonomakos, N.G. Deposit date: 2007-07-17 Release date: 2008-06-03 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.401 Å) Cite: Naturally occurring pentacyclic triterpenes as inhibitors of glycogen phosphorylase: synthesis, structure-activity relationships, and X-ray crystallographic studies J.Med.Chem., 51, 2008
4V9F	The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins Descriptor: 23S Ribosomal RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Gabdulkhakov, A. Deposit date: 2012-11-02 Release date: 2014-07-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.404 Å) Cite: Revisiting the Haloarcula marismortui 50S ribosomal subunit model. Acta Crystallogr.,Sect.D, 69, 2013
4P0W	Human farnesyl diphosphate synthase in complex with Arenarone and zoledronate Descriptor: 2-{[(1S,2R,4aS,8aR)-1,2,4a-trimethyl-5-methylidenedecahydronaphthalen-1-yl]methyl}cyclohexa-2,5-diene-1,4-dione, Farnesyl pyrophosphate synthase, MAGNESIUM ION, ... Authors: Liu, Y.L, Oldfield, E. Deposit date: 2014-02-23 Release date: 2014-07-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.406 Å) Cite: Taxodione and arenarone inhibit farnesyl diphosphate synthase by binding to the isopentenyl diphosphate site. Proc.Natl.Acad.Sci.USA, 111, 2014
6V0K	Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain Descriptor: GLYCEROL, Terpene synthase Authors: Christianson, D.W, Ronnebaum, T.A. Deposit date: 2019-11-18 Release date: 2020-01-29 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.41 Å) Cite: Higher-order oligomerization of a chimeric alpha beta gamma bifunctional diterpene synthase with prenyltransferase and class II cyclase activities is concentration-dependent. J.Struct.Biol., 210, 2020
3P9W	Crystal structure of an engineered human autonomous VH Domain in complex with VEGF Descriptor: Vascular endothelial growth factor A, human VEGF Authors: Ma, X, Wiesmann, C. Deposit date: 2010-10-18 Release date: 2012-04-18 Last modified: 2013-06-19 Method: X-RAY DIFFRACTION (2.41 Å) Cite: Design of Synthetic Autonomous VH Domain Libraries and Structural Analysis of a VH Domain Bound to Vascular Endothelial Growth Factor. J.Mol.Biol., 425, 2013
7Y7E	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-06-22 Release date: 2023-10-25 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
3KRP	Mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium and GPP Descriptor: 1,2-ETHANEDIOL, GERANYL DIPHOSPHATE, Geranyl diphosphate synthase large subunit, ... Authors: Chang, T.-H, Hsieh, F.-L, Ko, T.-P, Wang, A.H.-J. Deposit date: 2009-11-19 Release date: 2010-02-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Structure of a heterotetrameric geranyl pyrophosphate synthase from mint (Mentha piperita) reveals intersubunit regulation Plant Cell, 22, 2010

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