PDB: 97138 resultsInfo pagesStatus searchChemie searchBIRD

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2FZW	Structure of the binary complex of the E67L mutant of human glutathione-dependent formaldehyde dehydrogenase with NAD(H) Descriptor: Alcohol dehydrogenase class III chi chain, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION, ... Authors: Sanghani, P.C, Robinson, H. Deposit date: 2006-02-10 Release date: 2006-06-13 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Structure-function relationships in human glutathione-dependent formaldehyde dehydrogenase. Role of Glu-67 and Arg-368 in the catalytic mechanism. Biochemistry, 45, 2006
5YUS	DNA polymerase IV - DNA ternary complex 2 Descriptor: DNA polymerase IV, DTN, MAGNESIUM ION, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-11-07 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
8J82	GaHNL-12gen (artificial S-hydroxynitrile lyase generated by GAOptimizer) Descriptor: S-hydroxynitrile lyase Authors: Ozawa, H, Unno, I, Sekine, R, Ito, S, Nakano, S. Deposit date: 2023-04-29 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Development of evolutionary algorithm-based protein redesign method Cell Rep Phys Sci, 5, 2024
2DNJ	DNASE I-INDUCED DNA CONFORMATION. 2 ANGSTROMS STRUCTURE OF A DNASE I-OCTAMER COMPLEX Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5'-D(*GP*CP*GP*AP*TP*C)-3', 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', ... Authors: Lahm, A, Suck, D. Deposit date: 1986-10-21 Release date: 1994-01-31 Last modified: 2020-10-21 Method: X-RAY DIFFRACTION (2 Å) Cite: DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex J.Mol.Biol., 222, 1991
8G4M	Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... Authors: Wang, S, Morano, N.C, Shapiro, L, Kwong, P.D. Deposit date: 2023-02-10 Release date: 2023-07-12 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: HIV-1 neutralizing antibodies elicited in humans by a prefusion-stabilized envelope trimer form a reproducible class targeting fusion peptide. Cell Rep, 42, 2023
8G4T	Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein BG505 DS-SOSIP gp120, ... Authors: Wang, S, Kwong, P.D. Deposit date: 2023-02-10 Release date: 2023-07-12 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: HIV-1 neutralizing antibodies elicited in humans by a prefusion-stabilized envelope trimer form a reproducible class targeting fusion peptide. Cell Rep, 42, 2023
5YV3	DNA polymerase IV - DNA ternary complex 7 Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
1BIO	HUMAN COMPLEMENT FACTOR D IN COMPLEX WITH ISATOIC ANHYDRIDE INHIBITOR Descriptor: COMPLEMENT FACTOR D, GLYCEROL, ISATOIC ANHYDRIDE Authors: Jing, H, Babu, Y.S, Moore, D, Kilpatrick, J.M, Liu, X.-Y, Volanakis, J.E, Narayana, S.V.L. Deposit date: 1998-06-18 Release date: 1999-06-22 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structures of native and complexed complement factor D: implications of the atypical His57 conformation and self-inhibitory loop in the regulation of specific serine protease activity. J.Mol.Biol., 282, 1998
5YUU	DNA polymerase IV - DNA ternary complex 4 Descriptor: DNA polymerase IV, DTN1, DTN2, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2019-01-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.892 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
6GBF	The Structure of variant R369A of the Mo-insertase domain Cnx1E from Arabidopsis thaliana in complex with AMP Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE MONOPHOSPHATE, ... Authors: Krausze, J. Deposit date: 2018-04-13 Release date: 2018-07-18 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.712 Å) Cite: The functional principle of eukaryotic molybdenum insertases. Biochem. J., 475, 2018
8OJ9	Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 free form Descriptor: Phosphoenolpyruvate carboxylase 1 Authors: Haesaerts, S, Loris, R, Larsen, P.B. Deposit date: 2023-03-24 Release date: 2023-04-12 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (3.246383 Å) Cite: Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants To Be Published
8OJE	Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 in complex with L-malate Descriptor: (2S)-2-hydroxybutanedioic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Haesaerts, S, Loris, R, Larsen, P.B. Deposit date: 2023-03-24 Release date: 2023-05-31 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.142399 Å) Cite: Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants To Be Published
8OJF	Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 with bound phosphate Descriptor: CHLORIDE ION, PHOSPHATE ION, Phosphoenolpyruvate carboxylase 1 Authors: Haesaerts, S, Loris, R, Larsen, P.B. Deposit date: 2023-03-24 Release date: 2023-05-31 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (3.03683758 Å) Cite: Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants To Be Published
6W2T	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2) Descriptor: 18S rRNA, CrPV 5'-UTR IRES, Eukaryotic translation initiation factor 3 subunit A, ... Authors: Neupane, R, Pisareva, V, Rodriguez, C.F, Pisarev, A, Fernandez, I.S. Deposit date: 2020-03-08 Release date: 2020-04-22 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.36 Å) Cite: A complex IRES at the 5'-UTR of a viral mRNA assembles a functional 48S complex via an uAUG intermediate. Elife, 9, 2020
5YUV	DNA polymerase IV - DNA ternary complex 5 Descriptor: DNA polymerase IV, DTN1, DTN2, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-10-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
2DRC	INVESTIGATION OF THE FUNCTIONAL ROLE OF TRYPTOPHAN-22 IN ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE BY SITE-DIRECTED MUTAGENESIS Descriptor: CALCIUM ION, CHLORIDE ION, DIHYDROFOLATE REDUCTASE, ... Authors: Brown, K.A, Kraut, J. Deposit date: 1992-06-10 Release date: 1994-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Investigation of the functional role of tryptophan-22 in Escherichia coli dihydrofolate reductase by site-directed mutagenesis. Biochemistry, 30, 1991
5YUX	DNA polymerase IV - DNA ternary complex 8 Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-12-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
5YV2	DNA polymerase IV - DNA ternary complex 14 Descriptor: DNA polymerase IV, DTN1, DTN2, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-09-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
8OJY	Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 T778 mutant with bound malate Descriptor: (2S)-2-hydroxybutanedioic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Loris, R, Haesaerts, S, Larsen, P.B. Deposit date: 2023-03-25 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (3.09893727 Å) Cite: Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants To Be Published
5YYD	DNA polymerase IV - ternary complex 15 Descriptor: 5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine, DNA polymerase IV, DTN2, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-12-08 Release date: 2018-09-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
1HQ2	CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF E.COLI HPPK(R82A) WITH MGAMPCPP AND 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN AT 1.25 ANGSTROM RESOLUTION Descriptor: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE, ACETATE ION, ... Authors: Blaszczyk, J, Ji, X. Deposit date: 2000-12-13 Release date: 2003-04-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Dynamic Roles of Arginine Residues 82 and 92 of Escherichia coli 6-Hydroxymethyl-7,8-dihydropterin Pyrophosphokinase: Crystallographic Studies Biochemistry, 42, 2003
8OJQ	Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 T778 mutant with bound phosphate Descriptor: PHOSPHATE ION, Phosphoenolpyruvate carboxylase 1 Authors: Haesaerts, S, Loris, R, Larsen, P. Deposit date: 2023-03-24 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (3.04938388 Å) Cite: Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants To Be Published
8OJZ	Arabidopsis thaliana Phosphoenolpyruvate carboxylase 1 (PPC1) G678S mutant Descriptor: PHOSPHATE ION, Phosphoenolpyruvate carboxylase 1 Authors: Loris, R, Haesaerts, S, Larsen, P.B. Deposit date: 2023-03-25 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (3.247811 Å) Cite: Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants To Be Published
2CWG	CRYSTALLOGRAPHIC REFINEMENT AND STRUCTURE ANALYSIS OF THE COMPLEX OF WHEAT GERM AGGLUTININ WITH A BIVALENT SIALOGLYCOPEPTIDE FROM GLYCOPHORIN A Descriptor: AGGLUTININ ISOLECTIN 1 (WGA1), N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-glucopyranose, T5 SIALOGLYCOPEPTIDE OF GLYCOPHORIN A Authors: Wright, C.S. Deposit date: 1993-01-08 Release date: 1994-01-31 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystallographic refinement and structure analysis of the complex of wheat germ agglutinin with a bivalent sialoglycopeptide from glycophorin A. J.Mol.Biol., 232, 1993
6RFO	ERK2 MAP kinase with the activation loop of p38alpha Descriptor: Mitogen-activated protein kinase 1,Mitogen-activated protein kinase 14,Mitogen-activated protein kinase 1 Authors: Livnah, O, Eitan-Wexler, M. Deposit date: 2019-04-15 Release date: 2020-05-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The bacterial metalloprotease NleD selectively cleaves mitogen-activated protein kinases that have high flexibility in their activation loop. J.Biol.Chem., 295, 2020

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