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6A6J
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BU of 6a6j by Molmil
Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA
Descriptor: RNA (5'-R(P*CP*AP*UP*(5MC)P*U)-3'), ZINC ION, Zebra fish Y-box protein1 (YB-1)
Authors:Zhang, M.M, Wu, B.X, Huang, Y, Ma, J.B.
Deposit date:2018-06-28
Release date:2019-06-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.255 Å)
Cite:RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay.
Mol.Cell, 75, 2019
7YSE
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BU of 7yse by Molmil
Crystal structure of E. coli heterotetrameric GlyRS in complex with tRNA
Descriptor: Glycine--tRNA ligase alpha subunit, Glycine--tRNA ligase beta subunit, MAGNESIUM ION, ...
Authors:Han, L, Ju, Y, Zhou, H.
Deposit date:2022-08-12
Release date:2023-02-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.907 Å)
Cite:The binding mode of orphan glycyl-tRNA synthetase with tRNA supports the synthetase classification and reveals large domain movements.
Sci Adv, 9, 2023
8UPY
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BU of 8upy by Molmil
Methanosarcine mazei tRNAPyl in A-site of ribosome
Descriptor: RNA (72-MER)
Authors:Krahn, N, Zhang, J, Melnikov, S.V, Tharp, J.M, Villa, A, Patel, A, Howard, R.J, Gabir, H, Patel, T.R, Stetefeld, J, Puglisi, J, Soll, D.
Deposit date:2023-10-23
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:tRNA shape is an identity element for an archaeal pyrrolysyl-tRNA synthetase from the human gut.
Nucleic Acids Res., 52, 2024
8UPT
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BU of 8upt by Molmil
Candidatus Methanomethylophilus alvus tRNAPyl in A-site of ribosome
Descriptor: RNA (71-MER)
Authors:Krahn, N, Zhang, J, Melnikov, S.V, Tharp, J.M, Villa, A, Patel, A, Howard, R.J, Gabir, H, Patel, T.R, Stetefeld, J, Puglisi, J, Soll, D.
Deposit date:2023-10-23
Release date:2024-01-10
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:tRNA shape is an identity element for an archaeal pyrrolysyl-tRNA synthetase from the human gut.
Nucleic Acids Res., 52, 2024
2F3J
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BU of 2f3j by Molmil
The solution structure of the REF2-I mRNA export factor (residues 1-155).
Descriptor: RNA and export factor binding protein 2
Authors:Golovanov, A.P, Hautbergue, G.M, Wilson, S.A, Lian, L.Y.
Deposit date:2005-11-21
Release date:2006-10-31
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The solution structure of REF2-I reveals interdomain interactions and regions involved in binding mRNA export factors and RNA.
Rna, 12, 2006
8S8B
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BU of 8s8b by Molmil
Phenylalanyl-tRNA Synthetase Domain Swap: evolutionary advantage?
Descriptor: MAGNESIUM ION, Phenylalanyl-tRNA Synthetase alpha subunit, Phenylalanyl-tRNA Synthetase beta subunit
Authors:Real-Hohn, A, Ross, J.J, Stefania, V, Burga, A, Dong, G.
Deposit date:2024-03-06
Release date:2025-03-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Phenylalanyl-tRNA Synthetase Domain Swap: evolutionary advantage?
To Be Published
6YBE
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BU of 6ybe by Molmil
RNASE 3/1 version2
Descriptor: RNASE 3/1 version2
Authors:Fernandez-Millan, P, Prats-Ejarque, G, Vazquez-Monteagudo, S, Boix, E.
Deposit date:2020-03-16
Release date:2021-10-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Exploring the RNase A scaffold to combine catalytic and antimicrobial activities. Structural characterization of RNase 3/1 chimeras.
Front Mol Biosci, 9, 2022
6VA1
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BU of 6va1 by Molmil
Solution Structure of the Tau pre-mRNA Exon 10 Splicing Regulatory Element
Descriptor: RNA (5'-R(*CP*AP*CP*AP*CP*GP*UP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*UP*GP*UP*G)-3')
Authors:Chen, J.L, Fountain, M.A, Disney, M.D.
Deposit date:2019-12-16
Release date:2020-05-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Design, Optimization, and Study of Small Molecules That Target Tau Pre-mRNA and Affect Splicing.
J.Am.Chem.Soc., 142, 2020
7QIU
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BU of 7qiu by Molmil
YsgA 23s RNA methyltransferase from Bacillus subtilis
Descriptor: rRNA methylase
Authors:Labar, G, Van Elder, D, Roovers, M, Droogmans, L.
Deposit date:2021-12-16
Release date:2022-12-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.877 Å)
Cite:The Bacillus subtilis open reading frame ysgA encodes the SPOUT methyltransferase RlmP forming 2'- O -methylguanosine at position 2553 in the A-loop of 23S rRNA.
Rna, 28, 2022
2CV1
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BU of 2cv1 by Molmil
Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex
Descriptor: (4S)-4-AMINO-5-HYDROXYPENTANOIC ACID, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex
To be Published
5NB9
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BU of 5nb9 by Molmil
Structure of the N-terminal domain of the Escherichia Coli ProQ RNA binding protein
Descriptor: RNA chaperone ProQ
Authors:Gonzales, G, Hardwick, S, Maslen, S, Skehel, M, Holmqvist, E, Vogel, J, Bateman, A, Luisi, B, Broadhurst, R.
Deposit date:2017-03-01
Release date:2017-05-03
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure of the Escherichia coli ProQ RNA-binding protein.
RNA, 23, 2017
5NBB
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BU of 5nbb by Molmil
Structure of the C-terminal domain of the Escherichia Coli ProQ RNA binding protein
Descriptor: RNA chaperone ProQ
Authors:Gonzales, G, Hardwick, S, Maslen, S, Skehel, M, Holmqvist, E, Vogel, J, Bateman, A, Luisi, B, Broadhurst, R.
Deposit date:2017-03-01
Release date:2017-05-03
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure of the Escherichia coli ProQ RNA-binding protein.
RNA, 23, 2017
6S10
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BU of 6s10 by Molmil
NMR solution structure of a ProQ homolog from Legionella pneumophila
Descriptor: RNA chaperone ProQ
Authors:Immer, C, Hacker, C, Woehnert, J.
Deposit date:2019-06-18
Release date:2020-07-08
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Solution structure and RNA-binding of a minimal ProQ-homolog from Legionella pneumophila (Lpp1663).
Rna, 26, 2020
2TS1
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BU of 2ts1 by Molmil
STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE
Descriptor: TYROSYL-TRNA SYNTHETASE
Authors:Brick, P, Bhat, T.N, Blow, D.M.
Deposit date:1989-06-29
Release date:1989-10-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of tyrosyl-tRNA synthetase refined at 2.3 A resolution. Interaction of the enzyme with the tyrosyl adenylate intermediate.
J.Mol.Biol., 208, 1989
4O89
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BU of 4o89 by Molmil
Crystal structure of RtcA, the RNA 3'-terminal phosphate cyclase from Pyrococcus horikoshii.
Descriptor: CITRIC ACID, RNA 3'-terminal phosphate cyclase
Authors:Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T.
Deposit date:2013-12-26
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of RNA 3'-phosphate cyclase bound to substrate RNA.
Rna, 20, 2014
5Y98
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BU of 5y98 by Molmil
Crystal structure of native unbound peptidyl tRNA hydrolase from Acinetobacter baumannii at 1.36 A resolution
Descriptor: GLYCEROL, Peptidyl-tRNA hydrolase
Authors:Iqbal, N, Singh, N, Kaushik, S, Singh, P.K, Sharma, S, Singh, T.P.
Deposit date:2017-08-23
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Search of multiple hot spots on the surface of peptidyl-tRNA hydrolase: structural, binding and antibacterial studies.
Biochem. J., 475, 2018
5Y9A
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BU of 5y9a by Molmil
Crystal structure of the complex of peptidyl tRNA hydrolase with a phosphate ion at the substrate binding site and cytarabine at a new ligand binding site at 1.1 A resolution
Descriptor: CYTARABINE, PHOSPHATE ION, Peptidyl-tRNA hydrolase
Authors:Kaushik, S, Iqbal, N, Singh, N, Singh, P.K, Sharma, S, Singh, T.P.
Deposit date:2017-08-23
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Search of multiple hot spots on the surface of peptidyl-tRNA hydrolase: structural, binding and antibacterial studies.
Biochem. J., 475, 2018
1BMV
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BU of 1bmv by Molmil
PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION
Descriptor: PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN), PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN), RNA (5'-R(*GP*GP*UP*CP*AP*AP*AP*AP*UP*GP*C)-3')
Authors:Chen, Z, Stauffacher, C, Li, Y, Schmidt, T, Bomu, W, Kamer, G, Shanks, M, Lomonossoff, G, Johnson, J.E.
Deposit date:1989-10-09
Release date:1989-10-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Protein-RNA interactions in an icosahedral virus at 3.0 A resolution.
Science, 245, 1989
4PN1
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BU of 4pn1 by Molmil
Structure of S. pombe Pct1 RNA triphosphatase in complex with the Spt5 CTD
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Synthetic peptide, ...
Authors:Lima, C.D, Doamekpor, S.K.
Deposit date:2014-05-22
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.803 Å)
Cite:Fission yeast RNA triphosphatase reads an Spt5 CTD code.
Rna, 21, 2015
2LK3
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BU of 2lk3 by Molmil
U2/U6 Helix I
Descriptor: RNA (5'-R(*GP*GP*CP*UP*UP*AP*GP*AP*UP*CP*AP*GP*AP*AP*AP*UP*GP*AP*UP*CP*AP*GP*CP*C)-3')
Authors:Burke, J.E, Sashital, D.G, Zuo, X.E, Wang, Y, Butcher, S.E.
Deposit date:2011-10-03
Release date:2012-02-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the yeast U2/U6 snRNA complex.
Rna, 18, 2012
5NXT
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BU of 5nxt by Molmil
Wobble base paired RNA double helix
Descriptor: RNA (5'-R(*UP*GP*UP*UP*CP*UP*CP*UP*AP*CP*GP*AP*AP*GP*AP*AP*CP*A)-3')
Authors:Garg, A, Heinemann, U.
Deposit date:2017-05-10
Release date:2017-11-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.379 Å)
Cite:A novel form of RNA double helix based on G·U and C·A+ wobble base pairing.
RNA, 24, 2018
2LKR
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BU of 2lkr by Molmil
Yeast U2/U6 complex
Descriptor: RNA (111-MER)
Authors:Burke, J.E, Sashital, D.G, Zuo, X, Wang, Y, Butcher, S.E.
Deposit date:2011-10-19
Release date:2012-02-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the yeast U2/U6 snRNA complex.
Rna, 18, 2012
8DCD
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BU of 8dcd by Molmil
RNA ligase RtcB from Pyrococcus horikoshii in complex with Zn2+ and GTP
Descriptor: CHLORIDE ION, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Jacewicz, A, Dantuluri, S, Shuman, S.
Deposit date:2022-06-16
Release date:2022-10-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structures of RNA ligase RtcB in complexes with divalent cations and GTP.
Rna, 28, 2022
8DC9
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BU of 8dc9 by Molmil
RNA ligase RtcB from Pyrococcus horikoshii in complex with Mn2+ and GTP
Descriptor: CHLORIDE ION, GUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ...
Authors:Jacewicz, A, Dantuluri, S, Shuman, S.
Deposit date:2022-06-16
Release date:2022-10-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structures of RNA ligase RtcB in complexes with divalent cations and GTP.
Rna, 28, 2022
8DCB
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BU of 8dcb by Molmil
RNA ligase RtcB from Pyrococcus horikoshii in complex with Ni2+ and GTP
Descriptor: CHLORIDE ION, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Jacewicz, A, Dantuluri, S, Shuman, S.
Deposit date:2022-06-16
Release date:2022-10-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of RNA ligase RtcB in complexes with divalent cations and GTP.
Rna, 28, 2022

238582

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