PDB: 66478 resultsInfo pagesStatus searchChemie searchBIRD

---

2D3D	crystal structure of the RNA binding SAM domain of saccharomyces cerevisiae Vts1 Descriptor: CALCIUM ION, Vts1 protein Authors: Aviv, T, Amborski, A.N, Zhao, X.S, Kwan, J.J, Johnson, P.E, Sicheri, F, Donaldson, L.W. Deposit date: 2005-09-27 Release date: 2006-02-14 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The NMR and X-ray Structures of the Saccharomyces cerevisiae Vts1 SAM Domain Define a Surface for the Recognition of RNA Hairpins J.Mol.Biol., 356, 2006
2FU0	Plasmodium falciparum cyclophilin PFE0505w putative cyclosporin-binding domain Descriptor: cyclophilin, putative Authors: Dong, A, Lew, J, Sundararajan, E, Zhao, Y, Wasney, G, Vedadi, M, Koeieradzki, I, Edwards, A.M, Arrowsmith, C.H, Weigelt, J, Sundstrom, M, Bochkarev, A, Hui, R, Hills, T, Structural Genomics Consortium (SGC) Deposit date: 2006-01-25 Release date: 2006-02-07 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms. Mol.Biochem.Parasitol., 151, 2007
6NXA	ECAII(D90T,K162T) MUTANT AT PH 7 Descriptor: ACETIC ACID, GLYCEROL, L-asparaginase 2 Authors: Lubkowski, J, Wlodawer, A. Deposit date: 2019-02-08 Release date: 2019-08-07 Last modified: 2020-08-19 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Opportunistic complexes of E. coli L-asparaginases with citrate anions. Sci Rep, 9, 2019
6NX8	ECAII(D90T,K162T) MUTANT IN COMPLEX WITH CITRATE AT PH 6.2 Descriptor: ACETIC ACID, CITRIC ACID, L-asparaginase 2 Authors: Lubkowski, J, Wlodawer, A. Deposit date: 2019-02-08 Release date: 2019-08-07 Last modified: 2020-08-19 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Opportunistic complexes of E. coli L-asparaginases with citrate anions. Sci Rep, 9, 2019
6O9Y	Structure of human PARG complexed with JA2-8 Descriptor: 7-[(2S)-2-hydroxy-3-(morpholin-4-yl)propyl]-1,3-dimethyl-3,7-dihydro-1H-purine-2,6-dione, Poly(ADP-ribose) glycohydrolase Authors: Stegeman, R.A, Jones, D.E, Ellenberger, T, Kim, I.K, Tainer, J.A. Deposit date: 2019-03-15 Release date: 2019-12-25 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Selective small molecule PARG inhibitor causes replication fork stalling and cancer cell death. Nat Commun, 10, 2019
6OA3	Structure of human PARG complexed with JA2131 Descriptor: (8S)-1,3-dimethyl-8-{[2-(morpholin-4-yl)ethyl]sulfanyl}-6-sulfanylidene-1,3,6,7,8,9-hexahydro-2H-purin-2-one, Poly(ADP-ribose) glycohydrolase Authors: Stegeman, R.A, Jones, D.E, Ellenberger, T, Kim, I.K, Tainer, J.A. Deposit date: 2019-03-15 Release date: 2019-12-25 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Selective small molecule PARG inhibitor causes replication fork stalling and cancer cell death. Nat Commun, 10, 2019
4OTU	Crystal structure of the gamma-glutamyltranspeptidase from Bacillus licheniformis in complex with L-Glutamate Descriptor: GLUTAMIC ACID, Gamma glutamyl transpeptidase, Gamma-glutamyltranspeptidase, ... Authors: Merlino, A. Deposit date: 2014-02-14 Release date: 2014-07-23 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.022 Å) Cite: Low resolution X-ray structure of gamma-glutamyltranspeptidase from Bacillus licheniformis: Opened active site cleft and a cluster of acid residues potentially involved in the recognition of a metal ion. Biochim.Biophys.Acta, 1844, 2014
6OYB	Crystal structure of H62G mutant of human macrophage migration inhibitory factor Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Macrophage migration inhibitory factor, ... Authors: Pantouris, G, Lolis, E. Deposit date: 2019-05-14 Release date: 2020-04-22 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Regulation of MIF Enzymatic Activity by an Allosteric Site at the Central Solvent Channel. Cell Chem Biol, 27, 2020
6OII	Structure of Aedes aegypti OBP22 in the complex with arachidonic acid Descriptor: 1,2-ETHANEDIOL, AAEL005772-PA, ARACHIDONIC ACID, ... Authors: Jones, D.N, Wang, J. Deposit date: 2019-04-09 Release date: 2019-05-08 Last modified: 2020-05-06 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Aedes aegypti Odorant Binding Protein 22 selectively binds fatty acids through a conformational change in its C-terminal tail. Sci Rep, 10, 2020
1R70	Model of human IgA2 determined by solution scattering, curve fitting and homology modelling Descriptor: Human IgA2(m1) Heavy Chain, Human IgA2(m1) Light Chain Authors: Furtado, P.B, Whitty, P.W, Robertson, A, Eaton, J.T, Almogren, A, Kerr, M.A, Woof, J.M, Perkins, S.J. Deposit date: 2003-10-17 Release date: 2004-10-19 Last modified: 2024-02-14 Method: SOLUTION SCATTERING (30 Å) Cite: Solution Structure Determination of Monomeric Human IgA2 by X-ray and Neutron Scattering, Analytical Ultracentrifugation and Constrained Modelling: A Comparison with Monomeric Human IgA1. J.Mol.Biol., 338, 2004
4OOO	X-ray structure of the lysozyme derivative of tetrakis(acetato)chlorido diruthenium(II,III) complex Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ... Authors: Merlino, A. Deposit date: 2014-02-03 Release date: 2014-06-18 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Unusual Structural Features in the Lysozyme Derivative of the Tetrakis(acetato)chloridodiruthenium(II,III) Complex. Angew.Chem.Int.Ed.Engl., 53, 2014
4OT4	X-ray Structure of the Adduct formed between cisplatin and Ribonuclease A Descriptor: Cisplatin, Ribonuclease pancreatic Authors: Messori, L, Merlino, A. Deposit date: 2014-02-13 Release date: 2014-07-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Cisplatin binding to proteins: molecular structure of the ribonuclease a adduct. Inorg.Chem., 53, 2014
4OVH	E. coli sliding clamp in complex with (R)-6-bromo-9-(2-(carboxymethylamino)-2-oxoethyl)-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid Descriptor: (2R)-6-bromo-9-{2-[(carboxymethyl)amino]-2-oxoethyl}-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid, CALCIUM ION, CHLORIDE ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2014-02-21 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Bacterial Sliding Clamp Inhibitors that Mimic the Sequential Binding Mechanism of Endogenous Linear Motifs. J.Med.Chem., 58, 2015
6P1T	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound CMPCPP Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ... Authors: Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. Deposit date: 2019-05-20 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
6PAE	Dickeya chrysanthemi complex with L-Asp at pH 5.6 Descriptor: 1,2-ETHANEDIOL, ASPARTIC ACID, GLYCEROL, ... Authors: Lubkowski, J, Wlodawer, A. Deposit date: 2019-06-11 Release date: 2019-09-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase. Protein Sci., 28, 2019
6P1W	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing undamaged template dG and bound incoming CMPCPP Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ... Authors: Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. Deposit date: 2019-05-20 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.751 Å) Cite: Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
4PPO	First Crystal Structure for an Oxaliplatin-Protein Complex Descriptor: 1,2-ETHANEDIOL, CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II), Lysozyme C, ... Authors: Messori, L, Merlino, A. Deposit date: 2014-02-27 Release date: 2015-01-14 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.73 Å) Cite: The X-ray structure of the complex formed in the reaction between oxaliplatin and lysozyme. Chem.Commun.(Camb.), 50, 2014
4PFY	Crystal structure of mannohexaose bound oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (TM1223) from THERMOTOGA MARITIMA at 1.5 A resolution Descriptor: ABC transporter substrate-binding protein, MAGNESIUM ION, NITRATE ION, ... Authors: Lu, X, Ghimire-Rijal, S, Cuneo, M.J. Deposit date: 2014-05-01 Release date: 2014-09-17 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Duplication of Genes in an ATP-binding Cassette Transport System Increases Dynamic Range While Maintaining Ligand Specificity. J.Biol.Chem., 289, 2014
6PCO	Mechanism for regulation of DNA binding of Bordetella bronchiseptica BpsR by 6-hydroxynicotinic acid Descriptor: 1,4-BUTANEDIOL, MarR-family transcriptional regulator Authors: Booth, W.T, Davis, R.R, Deora, R, Hollis, T. Deposit date: 2019-06-17 Release date: 2019-11-06 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural mechanism for regulation of DNA binding of BpsR, a Bordetella regulator of biofilm formation, by 6-hydroxynicotinic acid. Plos One, 14, 2019
6PEI	Structure of sorbitol dehydrogenase from Sinorhizobium meliloti 1021 Descriptor: Sorbitol dehydrogenase (L-iditol 2-dehydrogenase) Authors: Bailey-Elkin, B.A, Kohlmeier, M.G, Oresnik, I.J, Mark, B.L. Deposit date: 2019-06-20 Release date: 2020-06-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Characterization of the sorbitol dehydrogenase SmoS from Sinorhizobium meliloti 1021 Acta Crystallogr.,Sect.D, 77, 2021
6P1N	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound incoming dAMPNPP Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. Deposit date: 2019-05-20 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
6P1S	Post-catalytic nicked complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and newly incorporated AMP Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. Deposit date: 2019-05-20 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
6PH6	Ternary complex crystal structure of DNA polymerase Beta with 2nt-gap with dCTP bound downstream Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*G)-3'), ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2019-06-25 Release date: 2019-12-11 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.6 Å) Cite: DNA polymerase beta nucleotide-stabilized template misalignment fidelity depends on local sequence context. J.Biol.Chem., 295, 2020
6P1P	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound incoming dCMPNPP Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. Deposit date: 2019-05-20 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
6P1V	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing undamaged template dG and bound incoming dCMPNPP Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. Deposit date: 2019-05-20 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019

<282283284285286287288289290291292293294295296297>