PDB: 45703 resultsInfo pagesStatus searchChemie searchBIRD

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4DT7	Crystal structure of thrombin bound to the activation domain QEDQVDPRLIDGKMTRRGDS of protein C Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, SODIUM ION, ... Authors: Pozzi, N, Barranco-Medina, S, Chen, Z, Di Cera, E. Deposit date: 2012-02-20 Release date: 2012-05-09 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Exposure of R169 controls protein C activation and autoactivation. Blood, 120, 2012
6REX	Crystal structure of the light-driven sodium pump KR2 in the pentameric form, pH 6.0 Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ... Authors: Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V. Deposit date: 2019-04-12 Release date: 2019-04-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure and mechanisms of sodium-pumping KR2 rhodopsin. Sci Adv, 5, 2019
6RF1	Crystal structure of the light-driven sodium pump KR2 in the pentameric "wet" form Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ... Authors: Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V. Deposit date: 2019-04-12 Release date: 2019-04-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure and mechanisms of sodium-pumping KR2 rhodopsin. Sci Adv, 5, 2019
6RF4	Crystal structure of the potassium-pumping S254A mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0 Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ... Authors: Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V. Deposit date: 2019-04-12 Release date: 2019-04-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure and mechanisms of sodium-pumping KR2 rhodopsin. Sci Adv, 5, 2019
6RF3	Crystal structure of the potassium-pumping G263F mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0 Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, SODIUM ION, ... Authors: Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V. Deposit date: 2019-04-12 Release date: 2019-04-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure and mechanisms of sodium-pumping KR2 rhodopsin. Sci Adv, 5, 2019
8FT5	Crystal structure of LeuT soaked with Crown-5 Descriptor: CHLORIDE ION, LEUCINE, Na(+):neurotransmitter symporter (Snf family), ... Authors: Karasawa, A, Liu, H, Quick, M, Hendrickson, A.H, Liu, Q. Deposit date: 2023-01-11 Release date: 2023-11-22 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Crystallographic characterization of sodium ions in a bacterial leucine/sodium symporter To be Published
6L2U	Soluble methane monooxygenase reductase FAD-binding domain from Methylosinus sporium. Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Methane monooxygenase Authors: Park, J.H, Ha, S.C, Rao, Z, Yoo, H, Yoon, C, Kim, S.Y, Kim, D.S, Lee, S.J. Deposit date: 2019-10-07 Release date: 2021-03-03 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Elucidation of the electron transfer environment in the MMOR FAD-binding domain from Methylosinus sporium 5. Dalton Trans, 50, 2021
8G1A	Cryo-EM structure of Nav1.7 with CBD Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ... Authors: Fan, X, Huang, J, Yan, N. Deposit date: 2023-02-01 Release date: 2023-07-05 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cannabidiol inhibits Na v channels through two distinct binding sites. Nat Commun, 14, 2023
8VN5	Homing endonuclease I-PpoI-DNA complex:ground state at pH8.0 (Tris) with Na+ Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VMW	Homing endonuclease I-PpoI-DNA complex:ground state at pH6.0 (K+ MES) with Na+ Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VMO	Homing endonuclease I-PpoI-DNA complex:ground state at pH7.0 (K+ MES) with Na+ Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
3E83	Crystal Structure of the the open NaK channel pore Descriptor: CESIUM ION, Potassium channel protein, SODIUM ION Authors: Jiang, Y, Alam, A. Deposit date: 2008-08-19 Release date: 2008-12-23 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural analysis of ion selectivity in the NaK channel Nat.Struct.Mol.Biol., 16, 2009
6NLE	X-ray structure of LeuT with V269 deletion Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Navratna, V, Yang, D, Gouaux, E. Deposit date: 2019-01-08 Release date: 2020-01-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.615 Å) Cite: Structural, functional, and behavioral insights of dopamine dysfunction revealed by a deletion inSLC6A3. Proc.Natl.Acad.Sci.USA, 116, 2019
4KFM	Crystal structure of the G protein-gated inward rectifier K+ channel GIRK2 (Kir3.2) in complex with the beta-gamma G protein subunits Descriptor: DODECYL-BETA-D-MALTOSIDE, G protein-activated inward rectifier potassium channel 2, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Whorton, M.R, MacKinnon, R. Deposit date: 2013-04-27 Release date: 2013-06-12 Last modified: 2013-09-11 Method: X-RAY DIFFRACTION (3.45 Å) Cite: X-ray structure of the mammalian GIRK2-beta gamma G-protein complex. Nature, 498, 2013
3FSY	Structure of tetrahydrodipicolinate N-succinyltransferase (Rv1201c;DapD) in complex with succinyl-CoA from Mycobacterium tuberculosis Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, MAGNESIUM ION, ... Authors: Schuldt, L, Weyand, S, Kefala, G, Weiss, M.S. Deposit date: 2009-01-12 Release date: 2009-06-23 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.97 Å) Cite: The three-dimensional Structure of a mycobacterial DapD provides insights into DapD diversity and reveals unexpected particulars about the enzymatic mechanism. J.Mol.Biol., 389, 2009
3FSX	Structure of tetrahydrodipicolinate N-succinyltransferase (Rv1201c; DapD) from Mycobacterium tuberculosis Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, MAGNESIUM ION, ... Authors: Schuldt, L, Weyand, S, Kefala, G, Weiss, M.S. Deposit date: 2009-01-12 Release date: 2009-06-23 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The three-dimensional Structure of a mycobacterial DapD provides insights into DapD diversity and reveals unexpected particulars about the enzymatic mechanism. J.Mol.Biol., 389, 2009
4XTJ	N-terminal 43 kDa fragment of the E. coli DNA gyrase B subunit grown from 100 mM KCl plus 100 mM NaCl condition Descriptor: CHLORIDE ION, DNA gyrase subunit B, MAGNESIUM ION, ... Authors: Hearnshaw, S.J, Chung, T.T, Stevenson, C.E.M, Maxwell, A, Lawson, D.M. Deposit date: 2015-01-23 Release date: 2015-04-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.92 Å) Cite: The role of monovalent cations in the ATPase reaction of DNA gyrase Acta Crystallogr.,Sect.D, 71, 2015
4YI9	Crystal structure of non-myristoylated E153A recoverin at 1.35 A resolution with a sodium ion bound to EF-hand 2 and calcium ion bound to EF-hand 3 Descriptor: CALCIUM ION, Recoverin, SODIUM ION Authors: Prem Kumar, R, Ranaghan, M.J, Oprian, D.D. Deposit date: 2015-02-28 Release date: 2015-12-02 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Crystal Structure of Recoverin with Calcium Ions Bound to Both Functional EF Hands. Biochemistry, 54, 2015
4F35	Crystal Structure of a bacterial dicarboxylate/sodium symporter Descriptor: CITRIC ACID, SODIUM ION, Transporter, ... Authors: Mancusso, R.L, Gregorio, G.G, Liu, Q, Wang, D.N. Deposit date: 2012-05-08 Release date: 2012-10-24 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (3.196 Å) Cite: Structure and mechanism of a bacterial sodium-dependent dicarboxylate transporter. Nature, 491, 2012
2RGI	Crystal structure of Ca2+-free S100A2 at 1.6 A resolution Descriptor: ISOPROPYL ALCOHOL, Protein S100-A2, SODIUM ION Authors: Koch, M, Diez, J, Fritz, G. Deposit date: 2007-10-03 Release date: 2008-01-29 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of Ca2+ -free S100A2 at 1.6-A resolution. J.Mol.Biol., 378, 2008
5GSC	Crystal structure of a class C beta lactamase of Apo form Descriptor: Beta-lactamase, CADMIUM ION Authors: An, Y.J, Cha, S.S. Deposit date: 2016-08-15 Release date: 2017-08-30 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.953 Å) Cite: Crystal structure of a class C beta lactamase of Apo form To Be Published
8A35	NaK C-DI mutant with Rb+ and Na+ Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Potassium channel protein, RUBIDIUM ION, ... Authors: Minniberger, S, Plested, A.J.R. Deposit date: 2022-06-07 Release date: 2023-02-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Asymmetry and Ion Selectivity Properties of Bacterial Channel NaK Mutants Derived from Ionotropic Glutamate Receptors. J.Mol.Biol., 435, 2023
7EVI	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 79% GTP, 21% GDP, Na+, Mg2+ Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Robinson, R.C, Akil, C, Tran, L.T. Deposit date: 2021-05-21 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7EVE	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 100% GDP and 2 Na+ Descriptor: GUANOSINE-5'-DIPHOSPHATE, SODIUM ION, Tubulin-like protein Authors: Robinson, R.C, Akil, C, Tran, L.T. Deposit date: 2021-05-21 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7EVC	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 60% GTP/40% GDP and 2 Na+ Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ... Authors: Robinson, R.C, Akil, C, Tran, L.T. Deposit date: 2021-05-21 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022

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