Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5T2G
DownloadVisualize
BU of 5t2g by Molmil
mPI3Kd IN COMPLEX WITH 7i
Descriptor: 4-[3-azanyl-6-[1-methyl-5-(1-phenylcyclopropyl)-1,2,4-triazol-3-yl]pyrazin-2-yl]pyrazole-1-carboxamide, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform
Authors:Petersen, J, Terstige, I, Perry, M, Svensson, T, Tyrchan, C, Lindmark, H, Oster, L.
Deposit date:2016-08-23
Release date:2017-04-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Discovery of triazole aminopyrazines as a highly potent and selective series of PI3K delta inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
7KEH
DownloadVisualize
BU of 7keh by Molmil
Crystal structure from SARS-CoV-2 NendoU NSP15
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION, Uridylate-specific endoribonuclease
Authors:Godoy, A.S, Nakamura, A.M, Pereira, H.M, Noske, G.D, Gawriljuk, V.O, Fernandes, R.S, Oliveira, K.I.Z, Oliva, G.
Deposit date:2020-10-10
Release date:2020-12-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease.
Nucleic Acids Res., 2023
5R8L
DownloadVisualize
BU of 5r8l by Molmil
PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z1891773393 in complex with INTERLEUKIN-1 BETA
Descriptor: Interleukin-1 beta, N-{4-[(1S)-1-aminoethyl]phenyl}cyclopropanecarboxamide, SULFATE ION
Authors:De Nicola, G.F, Nichols, C.E.
Deposit date:2020-03-03
Release date:2020-04-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes.
J.Med.Chem., 63, 2020
7D78
DownloadVisualize
BU of 7d78 by Molmil
The structure of thioesterase DcsB
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DltD domain-containing protein, ...
Authors:Tang, Y, Zhou, J.H, Wang, G.Q.
Deposit date:2020-10-03
Release date:2021-01-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.96543121 Å)
Cite:A Polyketide Cyclase That Forms Medium-Ring Lactones.
J.Am.Chem.Soc., 143, 2021
7D7Q
DownloadVisualize
BU of 7d7q by Molmil
Crystal structure of the transmembrane domain and linker region of Salpingoeca rosetta rhodopsin phosphodiesterase
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Phosphodiesterase, RETINAL
Authors:Ikuta, T, Shihoya, W, Yamashita, K, Nureki, O.
Deposit date:2020-10-05
Release date:2020-11-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural insights into the mechanism of rhodopsin phosphodiesterase.
Nat Commun, 11, 2020
3BZI
DownloadVisualize
BU of 3bzi by Molmil
Molecular and structural basis of polo-like kinase 1 substrate recognition: Implications in centrosomal localization
Descriptor: 9 mer peptide from M-phase inducer phosphatase 3, FORMIC ACID, Serine/threonine-protein kinase PLK1
Authors:Garcia-Alvarez, B, de Carcer, G, Ibanez, S, Bragado-Nilsson, E, Montoya, G.
Deposit date:2008-01-18
Release date:2008-02-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular and structural basis of polo-like kinase 1 substrate recognition: Implications in centrosomal localization.
Proc.Natl.Acad.Sci.Usa, 104, 2007
7DFM
DownloadVisualize
BU of 7dfm by Molmil
Crystal structure of glycoside hydrolase family 11 beta-xylanase from Streptomyces olivaceoviridis E-86
Descriptor: CHLORIDE ION, Endo-1,4-beta-xylanase
Authors:Fujimoto, Z, Kishine, N, Kaneko, S.
Deposit date:2020-11-09
Release date:2020-12-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-based substrate specificity analysis of GH11 xylanase from Streptomyces olivaceoviridis E-86.
Appl.Microbiol.Biotechnol., 105, 2021
6K7P
DownloadVisualize
BU of 6k7p by Molmil
Crystal structure of human AFF4-THD domain
Descriptor: AF4/FMR2 family member 4
Authors:Tang, D, Xue, Y, Li, S, Cheng, W, Duan, J, Wang, J, Qi, S.
Deposit date:2019-06-08
Release date:2020-03-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and functional insight into the effect of AFF4 dimerization on activation of HIV-1 proviral transcription.
Cell Discov, 6, 2020
3C0A
DownloadVisualize
BU of 3c0a by Molmil
Lactobacillus CASEI Thymidylate Synthase Ternary Complex with DUMP and the Phtalimidic Derivative 14C in Multiple Binding Modes-Mode 2
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 2-(2-chloropyridin-4-yl)-4-methyl-1H-isoindole-1,3(2H)-dione, Thymidylate synthase
Authors:Leone, R, Mangani, S, Cancian, L, Costi, M.P, Luciani, R, Ferrari, S.
Deposit date:2008-01-19
Release date:2009-01-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of the binding modes of N-phenylphthalimides inhibiting bacterial thymidylate synthase through X-ray crystallography screening
J.Med.Chem., 54, 2011
4ARB
DownloadVisualize
BU of 4arb by Molmil
Mus musculus Acetylcholinesterase in complex with (S)-C5685 at 2.25 A resolution.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(DIMETHYLAMINO)-N-{[(2S)-1-ETHYLPYRROLIDIN-2-YL]METHYL}-2-METHOXY-5-NITROBENZAMIDE, ACETYLCHOLINESTERASE, ...
Authors:Berg, L, Niemiec, M.S, Qian, W, Andersson, C.D, WittungStafshede, P, Ekstrom, F, Linusson, A.
Deposit date:2012-04-23
Release date:2012-11-28
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Similar But Different: Thermodynamic and Structural Characterization of a Pair of Enantiomers Binding to Acetylcholinesterase.
Angew.Chem.Int.Ed.Engl., 51, 2012
3ML2
DownloadVisualize
BU of 3ml2 by Molmil
Human carbonic anhydsase II in complex with an aryl sulfonamide inhibitor
Descriptor: 2-(7-methoxy-2-oxo-2H-chromen-4-yl)-N-(4-sulfamoylphenyl)acetamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Avvaru, B.S, Wagner, J, Robbins, A.H, Mckenna, R.
Deposit date:2010-04-16
Release date:2011-04-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Coumarinyl-substituted sulfonamides strongly inhibit several human carbonic anhydrase isoforms: solution and crystallographic investigations.
Bioorg.Med.Chem., 18, 2010
4DI9
DownloadVisualize
BU of 4di9 by Molmil
CRYSTAL STRUCTURE OF THE D248A mutant of 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE FROM SPHINGOMONAS PAUCIMOBILIS complexed with substrate at pH 6.5
Descriptor: (1E,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylic acid, 2-pyrone-4,6-dicarbaxylate hydrolase, ACETATE ION
Authors:Malashkevich, V.N, Toro, R, Hobbs, M.E, Raushel, F.M, Almo, S.C.
Deposit date:2012-01-11
Release date:2012-10-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure and Catalytic Mechanism of LigI: Insight into the Amidohydrolase Enzymes of cog3618 and Lignin Degradation.
Biochemistry, 51, 2012
5GM4
DownloadVisualize
BU of 5gm4 by Molmil
Crystal structure of FI-CMCase from Aspergillus aculeatus F-50 in complex with cellotetrose
Descriptor: Endoglucanase-1, SULFATE ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Huang, J.W, Liu, W.D, Zheng, Y.Y, Chen, C.C, Guo, R.T.
Deposit date:2016-07-12
Release date:2017-05-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structure and genetic modifications of FI-CMCase from Aspergillus aculeatus F-50
Biochem. Biophys. Res. Commun., 478, 2016
1PI6
DownloadVisualize
BU of 1pi6 by Molmil
YEAST ACTIN INTERACTING PROTEIN 1 (Aip1), ORTHORHOMBIC CRYSTAL FORM
Descriptor: Actin interacting protein 1, ZINC ION
Authors:Voegtli, W.C, Madrona, A.Y, Wilson, D.K.
Deposit date:2003-05-29
Release date:2003-07-15
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of Aip1p, a WD repeat protein that regulates Cofilin-mediated actin depolymerization.
J.Biol.Chem., 278, 2003
6KEL
DownloadVisualize
BU of 6kel by Molmil
Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in apo-form
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glutathione S-transferase E14
Authors:Koiwai, K, Inaba, K, Morohashi, K, Yumoto, F, Senda, T, Niwa, R.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
1NU9
DownloadVisualize
BU of 1nu9 by Molmil
Staphylocoagulase-Prethrombin-2 complex
Descriptor: IMIDAZOLE, MERCURY (II) ION, N-(sulfanylacetyl)-D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, ...
Authors:Friedrich, R, Bode, W, Fuentes-Prior, P, Panizzi, P, Bock, P.E.
Deposit date:2003-01-31
Release date:2003-10-07
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Staphylocoagulase is a prototype for the mechanism of cofactor-induced zymogen activation
NATURE, 425, 2003
4DN4
DownloadVisualize
BU of 4dn4 by Molmil
Crystal structure of the complex between cnto888 fab and mcp-1 mutant p8a
Descriptor: ACETATE ION, C-C motif chemokine 2, CNTO888 HEAVY CHAIN, ...
Authors:Obmolova, G, Teplyakov, A, Malia, T, Grygiel, T, Sweet, R, Snyder, L, Gilliland, G.
Deposit date:2012-02-08
Release date:2012-10-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for high selectivity of anti-CCL2 neutralizing antibody CNTO 888.
Mol.Immunol., 51, 2012
4A23
DownloadVisualize
BU of 4a23 by Molmil
Mus musculus Acetylcholinesterase in complex with racemic C5685
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 4-(DIMETHYLAMINO)-N-{[(2R)-1-ETHYLPYRROLIDIN-2-YL]METHYL}-2-METHOXY-5-NITROBENZAMIDE, 4-(DIMETHYLAMINO)-N-{[(2S)-1-ETHYLPYRROLIDIN-2-YL]METHYL}-2-METHOXY-5-NITROBENZAMIDE, ...
Authors:Berg, L, Andersson, C.D, Artrursson, E, Hornberg, A, Tunemalm, A.K, Linusson, A, Ekstrom, F.
Deposit date:2011-09-22
Release date:2011-12-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Targeting Acetylcholinesterase: Identification of Chemical Leads by High Throughput Screening, Structure Determination and Molecular Modeling.
Plos One, 6, 2011
1NO7
DownloadVisualize
BU of 1no7 by Molmil
Structure of the Large Protease Resistant Upper Domain of VP5, the Major Capsid Protein of Herpes Simplex Virus-1
Descriptor: Major capsid protein
Authors:Bowman, B.R, Baker, M.L, Rixon, F.J, Chiu, W, Quiocho, F.A.
Deposit date:2003-01-15
Release date:2004-01-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the herpesvirus major capsid protein
Embo J., 22, 2003
1K0R
DownloadVisualize
BU of 1k0r by Molmil
Crystal Structure of Mycobacterium tuberculosis NusA
Descriptor: NusA, SULFATE ION
Authors:Gopal, B, Haire, L.F, Gamblin, S.J, Dodson, E.J, Lane, A.N, Papavinasasundaram, K.G, Colston, M.J, Dodson, G, TB Structural Genomics Consortium (TBSGC)
Deposit date:2001-09-20
Release date:2001-12-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the transcription elongation/anti-termination factor NusA from Mycobacterium tuberculosis at 1.7 A resolution.
J.Mol.Biol., 314, 2001
1ZLX
DownloadVisualize
BU of 1zlx by Molmil
The apo structure of human glycinamide ribonucleotide transformylase
Descriptor: GLYCEROL, Phosphoribosylglycinamide formyltransferase
Authors:Dahms, T.E, Sainz, G, Giroux, E.L, Caperelli, C.A, Smith, J.L.
Deposit date:2005-05-09
Release date:2005-08-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The apo and ternary complex structures of a chemotherapeutic target: human glycinamide ribonucleotide transformylase.
Biochemistry, 44, 2005
1JIE
DownloadVisualize
BU of 1jie by Molmil
Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with metal-free bleomycin
Descriptor: BLEOMYCIN A2, bleomycin-binding protein
Authors:Sugiyama, M, Kumagai, T, Hayashida, M, Maruyama, M, Matoba, Y.
Deposit date:2001-07-02
Release date:2002-02-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus.
J.Biol.Chem., 277, 2002
1ZMN
DownloadVisualize
BU of 1zmn by Molmil
Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenyl)guanidine
Descriptor: (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL)PHENYL)GUANIDINE, Coagulation factor XI, SULFATE ION
Authors:Lazarova, T.I, Jin, L, Rynkiewicz, M.J, Gorga, J.C, Bibbins, F, Meyers, H.V, Babine, R.E, Strickler, J.E.
Deposit date:2005-05-10
Release date:2006-05-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Synthesis and in vitro biological evaluation of aryl boronic acids as potential inhibitors of factor XIa.
Bioorg.Med.Chem.Lett., 16, 2006
1TP0
DownloadVisualize
BU of 1tp0 by Molmil
Triple mutation in interleukin 1 beta cavity:replacement of phenylalanines with tryptophan.
Descriptor: Interleukin-1 beta
Authors:Adamek, D.H, Guerrero, L, Caspar, D.L.
Deposit date:2004-06-15
Release date:2005-02-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and energetic consequences of mutations in a solvated hydrophobic cavity.
J.Mol.Biol., 346, 2005
4MBB
DownloadVisualize
BU of 4mbb by Molmil
Cubic crystal form of PIR1 dual specificity phosphatase core
Descriptor: CHLORIDE ION, PHOSPHATE ION, RNA/RNP complex-1-interacting phosphatase
Authors:Sankhala, R.S, Lokareddy, R.K, Cingolani, G.
Deposit date:2013-08-19
Release date:2013-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Structure of Human PIR1, an Atypical Dual-Specificity Phosphatase.
Biochemistry, 53, 2014

245663

건을2025-12-03부터공개중

PDB statisticsPDBj update infoContact PDBjnumon