PDB: 1507 resultsInfo pagesStatus searchChemie searchBIRD

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6XIQ	Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress Descriptor: 18S ribosomal RNA, 35S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Zhou, Y, Bartesaghi, A, Silva, G.M. Deposit date: 2020-06-21 Release date: 2020-08-26 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proc.Natl.Acad.Sci.USA, 117, 2020
6ZCE	Structure of a yeast ABCE1-bound 43S pre-initiation complex Descriptor: 18S ribosomal RNA (1719-MER), 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... Authors: Kratzat, H, Mackens-Kiani, T, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. Deposit date: 2020-06-10 Release date: 2020-10-07 Last modified: 2021-01-13 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: A structural inventory of native ribosomal ABCE1-43S pre-initiation complexes. Embo J., 40, 2021
7CAP	Cyclic Lys48-linked triubiquitin Descriptor: Ubiquitin, ZINC ION Authors: Hiranyakorn, M, Yanaka, S, Satoh, T, Wilasri, T, Jityuti, B, Yagi-Utsumi, T, Kato, K. Deposit date: 2020-06-09 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.33 Å) Cite: NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains. Int J Mol Sci, 21, 2020
6XA9	SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide Descriptor: GLYCEROL, ISG15 CTD-propargylamide, Non-structural protein 3, ... Authors: Klemm, T, Calleja, D.J, Richardson, L.W, Lechtenberg, B.C, Komander, D. Deposit date: 2020-06-04 Release date: 2020-06-17 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2. Embo J., 39, 2020
6XAA	SARS CoV-2 PLpro in complex with ubiquitin propargylamide Descriptor: Non-structural protein 3, Ubiquitin-propargylamide, ZINC ION Authors: Klemm, T, Calleja, D.J, Richardson, L.W, Lechtenberg, B.C, Komander, D. Deposit date: 2020-06-04 Release date: 2020-06-17 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2. Embo J., 39, 2020
6Z7V	Crystal structure of Mindy2 (C266A) in complex with Lys48 linked di-ubiquitin (K48-Ub2) Descriptor: POTASSIUM ION, Polyubiquitin-C, TETRAETHYLENE GLYCOL, ... Authors: Abdul Rehman, S.A, Lange, S.M, Kulathu, Y. Deposit date: 2020-06-01 Release date: 2021-06-09 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Mechanism of activation and regulation of deubiquitinase activity in MINDY1 and MINDY2. Mol.Cell, 81, 2021
6Z6M	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. Deposit date: 2020-05-28 Release date: 2020-07-29 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6Z6J	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. Deposit date: 2020-05-28 Release date: 2020-07-29 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6Z6K	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. Deposit date: 2020-05-28 Release date: 2020-07-29 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6Z6N	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. Deposit date: 2020-05-28 Release date: 2020-07-29 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6Z6L	Cryo-EM structure of human CCDC124 bound to 80S ribosomes Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. Deposit date: 2020-05-28 Release date: 2020-07-29 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6WTG	SdeA DUB Domain in complex with Ubiquitin Descriptor: Ubiquitin, Ubiquitinating/deubiquitinating enzyme SdeA Authors: Kenny, S, Sheedlo, M, Das, C. Deposit date: 2020-05-02 Release date: 2021-03-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.63 Å) Cite: Insights into Ubiquitin Product Release in Hydrolysis Catalyzed by the Bacterial Deubiquitinase SdeA. Biochemistry, 60, 2021
6YVA	PLpro-C111S with mISG15 Descriptor: Replicase polyprotein 1a, Ubiquitin-like protein ISG15, ZINC ION Authors: Shin, D, Dikic, I. Deposit date: 2020-04-28 Release date: 2020-05-13 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.18 Å) Cite: Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity. Nature, 587, 2020
7BXG	MavC-UBE2N-Ub complex Descriptor: MavC, Polyubiquitin-C, Ubiquitin-conjugating enzyme E2 N Authors: Gao, P, Wang, Y. Deposit date: 2020-04-19 Release date: 2020-05-20 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.705 Å) Cite: Insights into catalysis and regulation of non-canonical ubiquitination and deubiquitination by bacterial deamidase effectors. Nat Commun, 11, 2020
6YPT	X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin Descriptor: METHYL 4-AMINOBUTANOATE, Polyubiquitin-C, RNA replicase polyprotein Authors: Fieulaine, S, Bressanelli, S. Deposit date: 2020-04-16 Release date: 2020-08-05 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.663 Å) Cite: X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin J.Biol.Chem., 2020
6WKR	PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome Descriptor: DNA (314-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Kasinath, V, Nogales, E, Beck, C, Sauer, P, Poepsel, S, Kosmatka, J, Faini, M, Toso, D, Aebersold, R. Deposit date: 2020-04-16 Release date: 2021-02-03 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications. Science, 371, 2021
7BWD	Structure of Dot1L-H2BK34ub Nucleosome Complex Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... Authors: Lou, Z.Y, Liu, L, Cao, L, Ai, H.S, Sun, Z.X. Deposit date: 2020-04-14 Release date: 2021-04-14 Method: ELECTRON MICROSCOPY (4.32 Å) Cite: Structure of the Dot1L-H2BK34ub Nucleosome Complex Reveals an Unprecedented Crosstalk Activation Mechanism through Nucleosome Shape Distortion To Be Published
6WJD	SA-like state of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin and E3 ubiquitin ligase E6AP/UBE3A Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ... Authors: Chen, X, Walters, K.J. Deposit date: 2020-04-13 Release date: 2020-08-05 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome. Structure, 28, 2020
7BU0	Crystal structure of a OTU deubiquitinase in complex with Ub-PA Descriptor: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine Authors: Ouyang, S.Y, Zhen, X.K. Deposit date: 2020-04-03 Release date: 2020-11-18 Last modified: 2023-04-05 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes. Elife, 9, 2020
6W9R	Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel bound to ubiquitin Descriptor: CITRATE ANION, OTU domain-containing protein wMelOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
6W9S	Crystal structure of an OTU deubiquitinase from Escherichia albertii bound to ubiquitin Descriptor: FORMIC ACID, OTU domain-containing protein EschOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2020-08-12 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
6W9D	RNF12 RING domain in complex with a Ube2d2~Ub conjugate Descriptor: E3 ubiquitin-protein ligase RLIM, IODIDE ION, Ubiquitin, ... Authors: Middleton, A.J, Day, C.L. Deposit date: 2020-03-22 Release date: 2020-05-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.19 Å) Cite: The RING Domain of RING Finger 12 Efficiently Builds Degradative Ubiquitin Chains. J.Mol.Biol., 432, 2020
6YBS	Structure of a human 48S translational initiation complex - head Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S12, ... Authors: Brito Querido, J, Sokabe, M, Kraatz, S, Gordiyenko, Y, Skehel, M, Fraser, C, Ramakrishnan, V. Deposit date: 2020-03-17 Release date: 2020-09-16 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of a human 48Stranslational initiation complex. Science, 369, 2020
6YAN	Mammalian 48S late-stage translation initiation complex with histone 4 mRNA Descriptor: 18S ribosomal RNA, 40S ribosomal protein S12, 40S ribosomal protein S21, ... Authors: Bochler, A, Simonetti, A, Guca, E, Hashem, Y. Deposit date: 2020-03-12 Release date: 2020-04-08 Last modified: 2020-04-22 Method: ELECTRON MICROSCOPY (3.48 Å) Cite: Structural Insights into the Mammalian Late-Stage Initiation Complexes. Cell Rep, 31, 2020
6YAM	Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA Descriptor: 18S ribosomal RNA, 40S ribosomal protein eS1, 40S ribosomal protein eS10, ... Authors: Bochler, A, Simonetti, A, Guca, E, Hashem, Y. Deposit date: 2020-03-12 Release date: 2020-04-08 Last modified: 2020-04-22 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural Insights into the Mammalian Late-Stage Initiation Complexes. Cell Rep, 31, 2020

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