PDB: 222624 resultsInfo pagesStatus searchChemie searchBIRD

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8SRB	Cryo-EM structure of TRPM2 chanzyme in the presence of EDTA and ADP-ribose Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, CHOLESTEROL, TRPM2 chanzyme Authors: Huang, Y, Kumar, S, Lu, W, Du, J. Deposit date: 2023-05-05 Release date: 2024-05-08 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.82 Å) Cite: Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol., 2024
8SRA	Cryo-EM structure of TRPM2 chanzyme in the presence of Calcium Descriptor: CALCIUM ION, CHOLESTEROL, TRPM2 chanzyme Authors: Huang, Y, Kumar, S, Lu, W, Du, J. Deposit date: 2023-05-05 Release date: 2024-05-08 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.93 Å) Cite: Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol., 2024
8SR9	Cryo-EM structure of TRPM2 chanzyme in the presence of Magnesium Descriptor: CHOLESTEROL, MAGNESIUM ION, TRPM2 chanzyme Authors: Huang, Y, Kumar, S, Lu, W, Du, J. Deposit date: 2023-05-05 Release date: 2024-05-08 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol., 2024
8SR8	Cryo-EM structure of TRPM2 chanzyme in the presence of EDTA (apo state) Descriptor: CHOLESTEROL, TRPM2 chanzyme Authors: Huang, Y, Kumar, S, Lu, W, Du, J. Deposit date: 2023-05-05 Release date: 2024-05-08 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.77 Å) Cite: Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol., 2024
8SR7	Cryo-EM structure of TRPM2 chanzyme in the presence of Magnesium, Adenosine monophosphate, and Ribose-5-phosphate Descriptor: 5-O-phosphono-beta-D-ribofuranose, ADENOSINE MONOPHOSPHATE, CHOLESTEROL, ... Authors: Huang, Y, Kumar, S, Lu, W, Du, J. Deposit date: 2023-05-05 Release date: 2024-05-08 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (1.97 Å) Cite: Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol., 2024
8SR6	Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (3-17)peptide Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Eukaryotic huntingtin interacting protein B, ... Authors: Xu, C, Chung, I.Y.W, Cygler, M. Deposit date: 2023-05-05 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (2.22 Å) Cite: Histone methyltransferase activity of the secreted Legionella pneumophila SET-domain effector RomA/LegAS4 depends on its ankyrin domain To Be Published
8SR5	particulate methane monooxygenase potassium cyanide treated Descriptor: Ammonia monooxygenase/methane monooxygenase, subunit C family protein, COPPER (II) ION, ... Authors: Tucci, F.J, Rosenzweig, A.C. Deposit date: 2023-05-05 Release date: 2023-11-29 Last modified: 2024-01-24 Method: ELECTRON MICROSCOPY (3.22 Å) Cite: Product analog binding identifies the copper active site of particulate methane monooxygenase. Nat Catal, 6, 2023
8SR4	particulate methane monooxygeanse treated with potassium cyanide and copper reloaded Descriptor: Ammonia monooxygenase/methane monooxygenase, subunit C family protein, COPPER (II) ION, ... Authors: Tucci, F.J, Jodts, R.J, Rosenzweig, A.C. Deposit date: 2023-05-05 Release date: 2023-11-15 Last modified: 2024-01-24 Method: ELECTRON MICROSCOPY (3.12 Å) Cite: Product analog binding identifies the copper active site of particulate methane monooxygenase. Nat Catal, 6, 2023
8SR2	particulate methane monooxygenase incubated with 4,4,4-trifluorobutanol Descriptor: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Ammonia monooxygenase/methane monooxygenase, ... Authors: Tucci, F.J, Rosenzweig, A.C. Deposit date: 2023-05-05 Release date: 2023-11-15 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.36 Å) Cite: Product analogue binding identifies the copper active site of particulate methane monooyxgenase Nat Catal, 2023
8SR1	particulate methane monooxygenase crosslinked with 4,4,4-trifluorobutanol bound Descriptor: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dihexanoyl-sn-glycero-3-phosphocholine, 4,4,4-trifluorobutan-1-ol, ... Authors: Tucci, F.J, Rosenzweig, A.C. Deposit date: 2023-05-05 Release date: 2023-11-15 Last modified: 2024-01-24 Method: ELECTRON MICROSCOPY (2.18 Å) Cite: Product analog binding identifies the copper active site of particulate methane monooxygenase. Nat Catal, 6, 2023
8SR0	CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3 local refined Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Lymphocyte activation gene 3 protein, favezelimab Fab heavy chain, ... Authors: Mishra, A.K, Shahid, S, Karade, S.S, Mariuzza, R.A. Deposit date: 2023-05-05 Release date: 2023-09-06 Last modified: 2023-10-18 Method: ELECTRON MICROSCOPY (3.53 Å) Cite: CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3 determined using a bivalent Fab as fiducial marker. Structure, 31, 2023
8SQZ	Structure of human ULK1 complex core (2:2:2 stoichiometry) in the PI3KC3-C1 mixture Descriptor: Autophagy-related protein 13, RB1-inducible coiled-coil protein 1, Serine/threonine-protein kinase ULK1 Authors: Chen, M, Hurley, J.H. Deposit date: 2023-05-04 Release date: 2023-06-21 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (5.85 Å) Cite: Structure and activation of the human autophagy-initiating ULK1C:PI3KC3-C1 supercomplex bioRxiv, 2023
8SQX	Solution structure of the basal pilin SpaB from Corynebacterium diphtheriae Descriptor: Putative surface anchored protein Authors: Sue, C.K, Mahoney, B.J, Cheung, N.A, Clubb, R.T. Deposit date: 2023-05-04 Release date: 2023-06-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The basal and major pilins in the Corynebacterium diphtheriae SpaA pilus adopt similar structures that competitively react with the pilin polymerase. Biopolymers, 115, 2024
8SQW	particulate methane monooxygenase crosslinked with 2,2,2-trifluoroethanol bound Descriptor: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Ammonia monooxygenase/methane monooxygenase, ... Authors: Tucci, F.J, Rosenzweig, A.C. Deposit date: 2023-05-04 Release date: 2023-11-15 Last modified: 2024-01-24 Method: ELECTRON MICROSCOPY (2.16 Å) Cite: Product analog binding identifies the copper active site of particulate methane monooxygenase. Nat Catal, 6, 2023
8SQV	Proteinase K Multiconformer Model at 333K Descriptor: CALCIUM ION, Proteinase K, SULFATE ION Authors: Du, S, Wankowicz, S, Yabukarski, F, Doukov, T, Herschlag, D, Fraser, J.S. Deposit date: 2023-05-04 Release date: 2023-08-09 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.22 Å) Cite: Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data. Methods Enzymol., 688, 2023
8SQU	Monomeric MapSPARTA bound with guide RNA and target DNA hybrid Descriptor: MAGNESIUM ION, TIR-APAZ, guide RNA, ... Authors: Shen, Z.F, Yang, X.Y, Fu, T.M. Deposit date: 2023-05-04 Release date: 2023-08-23 Last modified: 2023-09-20 Method: ELECTRON MICROSCOPY (3.28 Å) Cite: Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
8SQT	Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (iron bound, cubic form 2, F16L mutant) Descriptor: Bacterioferritin, CHLORIDE ION, FE (II) ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-05-04 Release date: 2023-05-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (iron bound, cubic form 2, F16L mutant) To be published
8SQR	Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (iron bound, F16L mutant) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Bacterioferritin, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-05-04 Release date: 2023-05-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (iron bound, F16L mutant) To be published
8SQQ	Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (Apo Cubic Form 2, F16L mutant) Descriptor: Bacterioferritin, CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-05-04 Release date: 2023-05-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (Apo Cubic Form 2, F16L mutant) To be published
8SQP	Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (Apo, F16L mutant) Descriptor: Bacterioferritin, CALCIUM ION, CHLORIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-05-04 Release date: 2023-05-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (Apo, F16L mutant) To be published
8SQO	Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (magnesium bound, F16L mutant) Descriptor: Bacterioferritin, CHLORIDE ION, MAGNESIUM ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-05-04 Release date: 2023-05-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (magnesium bound, F16L mutant) To be published
8SQN	CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DuD1MoD2 chimeric MXRA8, E1 envelope glycoprotein, ... Authors: Zimmerman, M.I, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID) Deposit date: 2023-05-04 Release date: 2023-12-20 Method: ELECTRON MICROSCOPY (3.89 Å) Cite: Vertebrate-class-specific binding modes of the alphavirus receptor MXRA8. Cell, 186, 2023
8SQM	Cleaved Ycf1p Monomer in the IFwide-alpha conformation Descriptor: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate, Metal resistance protein YCF1, Unknown peptide from Ycf1p R region Authors: Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V. Deposit date: 2023-05-04 Release date: 2024-05-08 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of a dimeric ABC transporter To Be Published
8SQL	Cleaved Ycf1p Monomer in the Beta Conformation Descriptor: Metal resistance protein YCF1, PHOSPHATIDYLETHANOLAMINE, Unknown peptide from Ycf1p R region Authors: Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V. Deposit date: 2023-05-04 Release date: 2024-05-08 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cleaved Ycf1p Monomer in the Beta Conformation To Be Published
8SQK	SARS-CoV-2 replication-transcription complex bound to RNA-nsp9 and GDP-betaS, as a pre-catalytic deRNAylation/mRNA capping intermediate Descriptor: 5'-O-[(R)-hydroxy(thiophosphonooxy)phosphoryl]guanosine, MAGNESIUM ION, Non-structural protein 7, ... Authors: Small, G.I, Darst, S.A, Campbell, E.A. Deposit date: 2023-05-04 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.01 Å) Cite: Structural and functional insights into the enzymatic plasticity of the SARS-CoV-2 NiRAN domain. Mol.Cell, 83, 2023

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