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8WFR
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BU of 8wfr by Molmil
The Crystal Structure of PCSK9 from Biortus.
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Wang, F, Cheng, W, Lv, Z, Meng, Q, Lu, Y.
Deposit date:2023-09-20
Release date:2023-11-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Crystal Structure of PCSK9 from Biortus.
To Be Published
8QH0
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BU of 8qh0 by Molmil
Crystal structure of the SARS-CoV-2 RBD with the antibody Cv2.3194
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Cv2.3194 Heavy chain, GLYCEROL, ...
Authors:Fernandez, I, Rey, F.A.
Deposit date:2023-09-06
Release date:2024-06-19
Last modified:2025-07-02
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Broad sarbecovirus neutralization by combined memory B cell antibodies to ancestral SARS-CoV-2.
Iscience, 27, 2024
8Q3H
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BU of 8q3h by Molmil
Capra hircus reactive intermediate deaminase A mutant - A108D
Descriptor: 1,2-ETHANEDIOL, 2-iminobutanoate/2-iminopropanoate deaminase, GLYCEROL
Authors:Rizzi, G, Visentin, C, Di Pisa, F, Ricagno, S.
Deposit date:2023-08-04
Release date:2024-06-26
Last modified:2025-01-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Site-directed mutagenesis reveals the interplay between stability, structure, and enzymatic activity in RidA from Capra hircus.
Protein Sci., 33, 2024
8QPX
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BU of 8qpx by Molmil
Crystal structure of Geodia cydonium Immunoglobulin-like domain of Receptor Tyrosine Kinase
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor tyrosine kinase (Fragment), ...
Authors:Lopez-Sagaseta, J, Urdiciain, A.
Deposit date:2023-10-03
Release date:2024-06-26
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unusual traits shape the architecture of the Ig ancestor molecule.
Commun Biol, 8, 2025
8GC2
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BU of 8gc2 by Molmil
Domoate-bound GluK2 kainate receptor in partially-open conformation 1
Descriptor: (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY-1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Bogdanovic, N, Tajima, N.
Deposit date:2023-03-01
Release date:2024-03-13
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for kainate receptor activation by a partial agonist
To Be Published
8V1V
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BU of 8v1v by Molmil
Human DNA Ligase I F872L bound to adenylated nicked DNA
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3'), ...
Authors:Tumbale, P.P, Williams, R.S.
Deposit date:2023-11-21
Release date:2025-07-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Human DNA Ligase I F872L bound to adenylated nicked DNA
To Be Published
6NP0
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BU of 6np0 by Molmil
Cryo-EM structure of 5HT3A receptor in presence of granisetron
Descriptor: 1-methyl-N-[(1R,5S)-9-methyl-9-azabicyclo[3.3.1]nonan-3-yl]indazole-3-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Basak, S, Chakrapani, S.
Deposit date:2019-01-17
Release date:2019-07-24
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Molecular mechanism of setron-mediated inhibition of full-length 5-HT3Areceptor.
Nat Commun, 10, 2019
9OMG
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BU of 9omg by Molmil
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV Env gp120, ...
Authors:Roark, R.S, Shapiro, L, Kwong, P.D.
Deposit date:2025-05-13
Release date:2025-11-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Env-antibody coevolution identifies B cell priming as the principal bottleneck to HIV-1 V2 apex broadly neutralizing antibody development
To Be Published
6WM3
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BU of 6wm3 by Molmil
Human V-ATPase in state 2 with SidK and ADP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-DIPHOSPHATE, Renin receptor, ...
Authors:Wang, L, Wu, H, Fu, T.M.
Deposit date:2020-04-20
Release date:2020-11-11
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly.
Mol.Cell, 80, 2020
6WKR
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BU of 6wkr by Molmil
PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome
Descriptor: DNA (314-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Kasinath, V, Nogales, E, Beck, C, Sauer, P, Poepsel, S, Kosmatka, J, Faini, M, Toso, D, Aebersold, R.
Deposit date:2020-04-16
Release date:2021-02-03
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications.
Science, 371, 2021
8Q87
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BU of 8q87 by Molmil
Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Nurullina, L, Jenner, L, Yusupov, M.
Deposit date:2023-08-18
Release date:2024-08-28
Last modified:2025-03-12
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Cryo-EM structure of the inactive ribosome complex accumulated in chick embryo cells in cold-stress conditions.
Febs Lett., 598, 2024
8W68
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BU of 8w68 by Molmil
Crystal structure of Q9PR55 at pH 6.0 (use NMR model)
Descriptor: Uncharacterized protein UU089.1
Authors:Hsu, M.F, Ko, T.P, Huang, K.F, Chen, Y.R, Huang, J.S, Hsu, S.T.D.
Deposit date:2023-08-28
Release date:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure, dynamics, and stability of the smallest and most complex 7 1 protein knot.
J.Biol.Chem., 300, 2023
9OOG
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BU of 9oog by Molmil
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV Env gp120, ...
Authors:Roark, R.S, Shapiro, L.S, Kwong, P.D.
Deposit date:2025-05-15
Release date:2025-11-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Rapid acquisition of HIV-1 neutralization breadth in a rhesus V2 apex germline antibody mouse model with a single bolus priming immunization
To Be Published
8Q7Z
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BU of 8q7z by Molmil
Structure of the G. gallus 80S non-rotated ribosome
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Nurullina, L, Jenner, L, Yusupov, M.
Deposit date:2023-08-17
Release date:2024-08-28
Last modified:2025-03-12
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM structure of the inactive ribosome complex accumulated in chick embryo cells in cold-stress conditions.
Febs Lett., 598, 2024
8W3W
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BU of 8w3w by Molmil
Crystal structure of IRAK4 in complex with compound 4
Descriptor: 7-methoxy-1-{[(2S)-5-oxopyrrolidin-2-yl]methoxy}isoquinoline-6-carboxamide, Interleukin-1 receptor-associated kinase 4
Authors:Han, S, Knafels, J.D.
Deposit date:2024-02-22
Release date:2024-05-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.976 Å)
Cite:In Retrospect: Root-Cause Analysis of Structure-Activity Relationships in IRAK4 Inhibitor Zimlovisertib (PF-06650833).
Acs Med.Chem.Lett., 15, 2024
8W3X
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BU of 8w3x by Molmil
Crystal structure of IRAK4 in complex with compound 6
Descriptor: 7-ethoxy-1-{[(2S)-5-oxopyrrolidin-2-yl]methoxy}isoquinoline-6-carboxamide, Interleukin-1 receptor-associated kinase 4
Authors:Han, S, Knafels, J.D.
Deposit date:2024-02-22
Release date:2024-05-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.765 Å)
Cite:In Retrospect: Root-Cause Analysis of Structure-Activity Relationships in IRAK4 Inhibitor Zimlovisertib (PF-06650833).
Acs Med.Chem.Lett., 15, 2024
8QQB
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BU of 8qqb by Molmil
Crystal structure of protein kinase CK2 catalytic subunit in complex with a Dibromo Dihydro Dibenzofuranone derivative
Descriptor: (4~{Z})-7,9-bis(bromanyl)-8-oxidanyl-4-(phenylazanylmethylidene)-1,2-dihydrodibenzofuran-3-one, 1,2-ETHANEDIOL, Casein kinase II subunit alpha, ...
Authors:Werner, C, Niefind, K, Jose, J.
Deposit date:2023-10-04
Release date:2024-10-16
Last modified:2025-01-01
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Discovery of 7,9-Dibromo-dihydrodibenzofuran as a Potent Casein Kinase 2 (CK2) Inhibitor: Synthesis, Biological Evaluation, and Structural Studies on E- / Z -Isomers.
Acs Pharmacol Transl Sci, 7, 2024
9Q84
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BU of 9q84 by Molmil
Crystal structure of Lotus japonicus CHIP13 extracellular domain in complex with chitooctaose
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gysel, K, Andersen, K.R.
Deposit date:2025-02-21
Release date:2025-07-16
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural basis for size-selective perception of chitin in plants
To Be Published
9QRS
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BU of 9qrs by Molmil
Crystal structure of CERK6 extracellular domain
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Cheng, J.X.J, Gysel, K, Stougaard, J, Andersen, K.R.
Deposit date:2025-04-04
Release date:2025-07-16
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis for size-selective perception of chitin in plants
To Be Published
6W9G
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BU of 6w9g by Molmil
Crystal Structure of the Fab fragment of humanized 5c8 antibody containing the fluorescent non-canonical amino acid L-(7-hydroxycoumarin-4-yl)ethylglycine in complex with CD40L at pH 6.8
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 5c8* Fab (heavy chain), ...
Authors:Henderson, J.N, Simmons, C.R, Mills, J.H.
Deposit date:2020-03-23
Release date:2020-12-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural Insights into How Protein Environments Tune the Spectroscopic Properties of a Noncanonical Amino Acid Fluorophore.
Biochemistry, 59, 2020
6VZZ
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BU of 6vzz by Molmil
Crystal structure of glucokinase from Balamuthia mandrillaris in complex with glucose
Descriptor: 1,2-ETHANEDIOL, BamaA.19900.a, CALCIUM ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-02-28
Release date:2020-03-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Characterization of Glucokinases from Pathogenic Free-Living Amoebae.
Antimicrob.Agents Chemother., 2022
6X96
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BU of 6x96 by Molmil
Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 10A fragment antigen binding variable domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 HIV-1 Env gp120, ...
Authors:Ozorowski, G, Cottrell, C.A, Ward, A.B.
Deposit date:2020-06-02
Release date:2021-12-08
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Limited breadth of anti-HIV Env glycan hole antibodies is further hindered by strain-specific peptide interactions
To Be Published
6X98
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BU of 6x98 by Molmil
Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 11B fragment antigen binding variable domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 HIV-1 Env gp120, ...
Authors:Ozorowski, G, Cottrell, C.A, Ward, A.B.
Deposit date:2020-06-02
Release date:2021-12-08
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Limited breadth of anti-HIV Env glycan hole antibodies is further hindered by strain-specific peptide interactions
To Be Published
6X97
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BU of 6x97 by Molmil
Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 11A fragment antigen binding variable domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 HIV-1 Env gp120, ...
Authors:Ozorowski, G, Cottrell, C.A, Ward, A.B.
Deposit date:2020-06-02
Release date:2021-12-08
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Limited breadth of anti-HIV Env glycan hole antibodies is further hindered by strain-specific peptide interactions
To Be Published
7Q49
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BU of 7q49 by Molmil
Local refinement structure of the N-domain of full-length, monomeric, soluble somatic angiotensin I-converting enzyme
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ZINC ION, ...
Authors:Lubbe, L, Sewell, B.T, Sturrock, E.D.
Deposit date:2021-10-29
Release date:2022-07-20
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:Cryo-EM reveals mechanisms of angiotensin I-converting enzyme allostery and dimerization.
Embo J., 41, 2022

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